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Synthesis and analysis of telomere quadruplex DNA-binding porphyrins based on an electrostatic interaction model

Research Project

Project/Area Number 21590118
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Drug development chemistry
Research InstitutionUniversity of Shizuoka

Principal Investigator

ISHIKAWA Yoshinobu  静岡県立大学, 薬学部, 准教授 (00305004)

Co-Investigator(Kenkyū-buntansha) YOKOYAMA Hideshi  静岡県立大学, 薬学部, 講師 (70433208)
Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2011: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2010: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Fiscal Year 2009: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywordsテロメア / テロメラーゼ / 核酸 / 四重鎖 / ポルフィリン / 分子認識 / インシリコ創薬 / 薬学 / 生物物理 / 有機化学
Research Abstract

Drug design, molecular docking, molecular dynamics simulation and synthesis of octacationic porphyrins bearing pyridiniums at their meso and terminal positions were carried out, because these were expected to interact with telomere quadruplex DNA more electrostatically and tightly than did tetracationic porphyrins. In addition, crystallization of the complex of telomere quadruplex DNA with the octacationic porphyrins was attempted.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (55 results)

All 2011 2010 2009 Other

All Journal Article (13 results) (of which Peer Reviewed: 13 results) Presentation (38 results) Remarks (4 results)

  • [Journal Article] Binding mode prediction and inhibitor design of anti-influenza virus diketo acids targeting metalloenzyme RNA polymerase by molecular docking2011

    • Author(s)
      Ishikawa Y. & Fujii S.
    • Journal Title

      Bioinformation

      Volume: 6 Pages: 221-225

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] ortho-Selective Nucleophilic Addition of Primary Amines to Silylbenzynes : Synthesis of 2-Silylanilines2011

    • Author(s)
      Ikawa T., Nishiyama T., Shigeta T., Mohri S., Morita S., Takayanagi S., Terauchi Y., Morikawa Y., Takagi A., Ishikawa Y., Fujii S., Kita Y. Akai S.
    • Journal Title

      Angew. Chem. Int. Ed.

      Volume: 50 Pages: 5674-5677

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Novel structure of an N-terminal domain that is crucial for the dimeric assembly and DNA-binding of an archaeal DNA polymerase D large subunit from Pyrococcus horikoshii2011

    • Author(s)
      Matsui I., Urushibata Y., Shen Y., Matsui E., Yokoyama H.
    • Journal Title

      FEBS Lett.

      Volume: 585 Pages: 452-458

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Ortho-selective nucleophilicaddition of primary amines tosilylbenzynes: Synthesis of 2-silylanilines2011

    • Author(s)
      Y . Kita et al.
    • Journal Title

      Angew . Chem., Int. Ed.

      Volume: 50 Issue: 25 Pages: 5674-5677

    • DOI

      10.1002/anie.201100360

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 1, 1', 1'', 1'''-[Porphyrin-5, 10, 15, 20-tetrayltetrakis(3, 1-phenylenemethylene)] tetraquinolinium Tetrabromide2010

    • Author(s)
      Ishikawa Y., Yamashita T., Fujii S., Uno T.
    • Journal Title

      Molbank

      Volume: 704

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Binding of sulphatide to recombinant haemagglutinin of influenza A virus produced by a baculovirus protein expression system2010

    • Author(s)
      Takahashi, T., Satoh, H., Takaguchi, M., Takafuji, S., Yokoyama, H., Fujii, S. & Suzuki, T.
    • Journal Title

      J. Biochem

      Volume: 147 Pages: 459-462

    • NAID

      10027874834

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] 膜タンパク質ストマチンの三次元構造とその特異的切断プロテアーゼの機能2010

    • Author(s)
      横山英志
    • Journal Title

      YAKUGAKU ZASSHI

      Volume: 130 Pages: 1289-1293

    • NAID

      130000451671

    • Related Report
      2011 Final Research Report 2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 1,1',1',1'-[Porphyrin-5,10,15,20-tetrayltetrakis(3,1-phenylenemethylene)]tetraquinolinium Tetrabromide2010

    • Author(s)
      Ishikawa Y., Yamashita T., Fujii S., Uno T.
    • Journal Title

      Molbank

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Binding of sulphatide to recombinant haemagglutinin of influenza A virus produced by a baculovirus protein expression system2010

    • Author(s)
      Takahashi, T., Satoh, H., Takaguchi, M., Takafuji, S., Yokoyama, H., Fujii, S., Suzuki, T
    • Journal Title

      J.Biochem.

      Volume: 147 Pages: 459-462

    • NAID

      10027874834

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Zinc(II)-5, 10, 15, 20-tetrakis(a-pyridino-m-tolyl) p orphyrin Tetrabromide2009

    • Author(s)
      Ishikawa Y., Yamashita T., Fujii S., Uno T.
    • Journal Title

      Molbank

      Volume: 637

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Unusual thermal disassembly of the SPFH domain oligomer from Pyrococcus horikoshii2009

    • Author(s)
      Kuwahara, Y., Unzai, S., Nagata, T., Hiroaki, Y., Yokoyama, H., Matsui, I., Ikegami, T., Fujiyoshi, Y. & Hiroaki, H.
    • Journal Title

      Biophys. J.

      Volume: 97 Pages: 2034-2043

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Zinc(II)-5, 10, 15, 20-tetrakis(a-pyridino-m-tolyl)porphyrin Tetrabromide2009

    • Author(s)
      Ishikawa Y., Yamashita T., Fujii S., Uno T.
    • Journal Title

      Molbank

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Unusual thermal disassembly of the SPFH domain oligomer from Pyrococcus horikoshii2009

    • Author(s)
      Kuwahara, Y., Unzai, S., Nagata, T., Hiroaki, Y., Yokoyama, H., Matsui, I., Ikegami, T., Fujiyoshi, Y., Hiroaki, H.
    • Journal Title

      Biophys.J 97

      Pages: 2034-2043

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] D-ファミリーDNAポリメラーゼの大サブユニットN-末端領域に保存される両親媒性は酵素安定性とDNA合成活性を支配する2011

    • Author(s)
      松井郁夫、漆畑祐司、申玉龍、松井えり子、横山英志
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2011-12-15
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] Eg5モータードメイン-阻害剤複合体の調製と結晶化2011

    • Author(s)
      加藤詩織、横山英志、澤田潤一、浅井章良、藤井敏
    • Organizer
      第84回日本生化学会大会
    • Place of Presentation
      京都
    • Year and Date
      2011-09-22
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] Sulfatideによるインフルエンザウイルスの複製制御2011

    • Author(s)
      高橋忠伸、木村愛弓、紅林佑希、高橋俊策、佐藤紘彰、川岸佐和子、横山英志、藤井敏、本家孝一、鈴木康夫、鈴木隆
    • Organizer
      第53回日本脂質生化学会
    • Place of Presentation
      東京
    • Year and Date
      2011-05-13
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] Binding mode prediction and design of diketo acid derivatives inhibiting Influenza Viral Metalloenzyme RNA Polymerase2011

    • Author(s)
      Yoshinobu Ishikawa and Satoshi Fujii
    • Place of Presentation
      Cambridge, UK
    • Related Report
      2011 Final Research Report
  • [Presentation] Molecular mechanism of metal selective uptake by neutrophil-activating protein2011

    • Author(s)
      Osamu Tsuruta, Hideshi Yokoyama, Satoshi Fujii
    • Organizer
      The 22nd Congress of the International Union of Crystallography
    • Place of Presentation
      Madrid, Spain
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] Crystal structures of lipid-raft protein stomatin and its specific protease2011

    • Author(s)
      Hideshi Yokoyama, Satoshi Fujii and Ikuo Matsui
    • Organizer
      The 22nd Congress of the International Union of Crystallography
    • Place of Presentation
      Madrid, Spain
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] The amphipathic nature of the N-terminus conserved in archaeal D-family DNA polymerase large subunit : a potential target for the DNA replication control of archaea2011

    • Author(s)
      Ikuo Matsui, Yuji Urushibata, Yulong Shen, Eriko Matsui, Hideshi Yokoyama
    • Organizer
      The 11th International Conference on Thermophiles 2011
    • Place of Presentation
      Montana, USA
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] Binding mode prediction and design of diketo acid derivatives in hibiting Influenza Viral Metalloenzyme RNA Polymerase2011

    • Author(s)
      Yoshinobu Ishikawa, Satoshi Fujii
    • Organizer
      16th SCI-RSC Cambridge Medicinal Chemistry Symposium
    • Place of Presentation
      Cambridge, UK
    • Related Report
      2011 Annual Research Report
  • [Presentation] Binding of sulfatide to recombinant hemagglutinin of influenza A virus produced by a baculovirus protein expression system2010

    • Author(s)
      Takashi Suzuki, Tadanobu Takahashi, Hiroaki Satoh, Masahiro Takaguchi, Suguru Takafuji, Hideshi Yokoyama, Satoshi Fujii
    • Organizer
      第33回日本分子生物学会年会・第83回日本生化学会大会合同大会
    • Place of Presentation
      神戸
    • Year and Date
      2010-12-07
    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Presentation] 超好熱菌Pyrococcus horikoshiiのSPFHスーパーファミリーに属する膜タンパク質群の機能構造と膜小胞体形成2010

    • Author(s)
      松井郁夫、桑原陽太、松井えり子、廣明秀一、横山英志
    • Organizer
      第33回日本分子生物学会年会・第83回日本生化学会大会合同大会
    • Place of Presentation
      神戸
    • Year and Date
      2010-12-07
    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Presentation] Binding mode prediction and rational design of diketo acid derivatives targeting metalloenzyme RNA polymerase of influenza virus2010

    • Author(s)
      Yoshinobu Ishikawa, Satoshi Fujii
    • Organizer
      第38回構造活性相関シンポジウム
    • Place of Presentation
      徳島
    • Year and Date
      2010-10-31
    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Presentation] Binding of sulfatide to recombinant hemagglutinin of influenza A virus produced by a baculovirus protein expression system2010

    • Author(s)
      Tadanobu Takahashi, Hiroaki Satoh, Masahiro Takaguchi, Suguru Takafuji, Hideshi Yokoyama, Satoshi Fujii, Takashi Suzuki
    • Organizer
      3rd International Conference on Health and Longevity Sciences
    • Place of Presentation
      Shizuoka
    • Year and Date
      2010-10-01
    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Presentation] X-ray crystal structure and function of 1510-N protease specific for stomatin from P. horikoshii2010

    • Author(s)
      Hideshi Yokoyama
    • Organizer
      JST-CNRS Joint Seminar 2010
    • Place of Presentation
      Paris
    • Year and Date
      2010-09-22
    • Related Report
      2011 Final Research Report
  • [Presentation] X-ray crystal structure and function of 1510-N protease specific for stomatin from P.horikoshii2010

    • Author(s)
      Hideshi Yokoyama
    • Organizer
      JST-CNRS Joint Seminar 2010
    • Place of Presentation
      Paris, France
    • Year and Date
      2010-09-22
    • Related Report
      2010 Annual Research Report
  • [Presentation] Structure-based Drug Design of Diketo Acid Derivatives inhibiting Influenza Viral Metalloenzyme RNA Polymerase2010

    • Author(s)
      Yoshinobu Ishikawa, Satoshi Fujii
    • Organizer
      International Symposium of Medicinal Chemistry
    • Place of Presentation
      Brussels, Belgium
    • Year and Date
      2010-09-08
    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Presentation] バキュロウイルス-タンパク質発現システムにより作製したH5型HAのsulfatideへの結合性2010

    • Author(s)
      高橋忠伸、佐藤紘彰、高口仁宏、高藤俊、横山英志、藤井敏、鈴木隆
    • Organizer
      第24回インフルエンザ研究者交流の会
    • Place of Presentation
      軽井沢
    • Year and Date
      2010-07-04
    • Related Report
      2011 Final Research Report
  • [Presentation] バキュロウイルスータンパク質発現システムにより作製したH5型HAのsulfatideへの結合性2010

    • Author(s)
      高橋忠伸、佐藤紘彰、高口仁宏、高藤俊、横山英志、藤井敏、鈴木隆
    • Organizer
      第24回インフルエンザ研究者交流の会
    • Place of Presentation
      軽井沢
    • Year and Date
      2010-07-04
    • Related Report
      2010 Annual Research Report
  • [Presentation] インフルエンザウィルスの金属酵素RNAポリメラーゼに対するジケト酸誘導体の分子ドッキング2010

    • Author(s)
      石川吉伸、藤井敏
    • Organizer
      日本薬学会第130年会
    • Place of Presentation
      岡山
    • Year and Date
      2010-03-29
    • Related Report
      2011 Final Research Report
  • [Presentation] 膜タンパク質ストマチンの三次元構造とその特異的切断プロテアーゼの機能2010

    • Author(s)
      横山英志、藤井敏、松井郁夫
    • Organizer
      日本薬学会第130年会
    • Place of Presentation
      岡山
    • Year and Date
      2010-03-29
    • Related Report
      2011 Final Research Report
  • [Presentation] インフルエンザウィルスの金属酵素RNAポリメラーゼに対するジケト酸誘導体の分子ドッキング2010

    • Author(s)
      石川吉伸, 藤井敏
    • Organizer
      日本薬学会 第130年会(岡山)
    • Place of Presentation
      岡山大学
    • Year and Date
      2010-03-29
    • Related Report
      2009 Annual Research Report
  • [Presentation] 膜タンパク質ストマチンの三次元構造とその特異的切断プロテアーゼの機能2010

    • Author(s)
      横山英志, 藤井敏, 松井郁夫
    • Organizer
      日本薬学会 第130年会(岡山)
    • Place of Presentation
      岡山大学
    • Year and Date
      2010-03-29
    • Related Report
      2009 Annual Research Report
  • [Presentation] ヘリコバクターピロリ好中球活性化タンパク質による金属イオンの貯蔵・放出の構造基盤2010

    • Author(s)
      鶴田修、赤尾直也、横山英志、藤井敏
    • Organizer
      日本薬学会第130年会
    • Place of Presentation
      岡山
    • Year and Date
      2010-03-28
    • Related Report
      2011 Final Research Report
  • [Presentation] ヘリコバクターピロリ好中球活性化タンパク質による金属イオンの貯蔵・放出の構造基盤2010

    • Author(s)
      鶴田修, 赤尾直也, 横山英志, 藤井敏
    • Organizer
      日本薬学会 第130年会(岡山)
    • Place of Presentation
      岡山大学
    • Year and Date
      2010-03-28
    • Related Report
      2009 Annual Research Report
  • [Presentation] Binding of sulfatide to recombinant hemagglutinin of influenza A virus produced by a baculovirus protein expression system2010

    • Author(s)
      Tadanobu Takahashi, Hiroaki Satoh, Masahiro Takaguchi, Suguru Takafuji, Hideshi Yokoyama, Satoshi Fujii, Takashi Suzuki
    • Organizer
      International Carbohydrate Symposium
    • Place of Presentation
      Tokyo
    • Related Report
      2011 Final Research Report 2010 Annual Research Report
  • [Presentation] The structure basis of SPFH proteins linking to vesicle formation from a hyperthermophilic archaeon Pyrococcus horikoshii2010

    • Author(s)
      Ikuo Matsui, Yohta Kuwahara, Eriko Matsui, Hidekazu Hiroaki, Hideshi Yokoyama
    • Organizer
      8th International Congress on Extremophiles
    • Place of Presentation
      Azores, Portugal
    • Related Report
      2011 Final Research Report
  • [Presentation] The structure basis of SPFH proteins linking to vesicle formation from a hyperthermophilic archaeon Pyrococcus horikoshii2010

    • Author(s)
      Ikuo Matsui, Yohta Kuwahara, Eriko Matsui, Hidekazu Hiroaki, Hideshi Yokoyama
    • Organizer
      8^<th> International Congress on Extremophiles
    • Place of Presentation
      Azores, Portugal
    • Related Report
      2010 Annual Research Report
  • [Presentation] トリインフルエンザウイルスH5型ヘマグルチニンのバキュロウイルスを用いた大量産生系の確立2009

    • Author(s)
      佐藤紘彰、高橋忠伸、横山英志、藤井敏、鈴木隆
    • Organizer
      日本病院薬剤師会東海ブロック・日本薬学会東海支部合同学術大会2009
    • Place of Presentation
      四日市
    • Year and Date
      2009-11-23
    • Related Report
      2011 Final Research Report 2009 Annual Research Report
  • [Presentation] X-ray crystal structure of stomatin from P. horikoshii2009

    • Author(s)
      Hideshi Yokoyama
    • Organizer
      JST-CNRS Joint Seminar 2009
    • Place of Presentation
      つくば
    • Year and Date
      2009-10-30
    • Related Report
      2011 Final Research Report
  • [Presentation] X-ray crystal structure of stomatin from P.horikoshii2009

    • Author(s)
      横山英志
    • Organizer
      JST-CNRS Joint Seminar 2009
    • Place of Presentation
      Tsukuba
    • Year and Date
      2009-10-30
    • Related Report
      2009 Annual Research Report
  • [Presentation] Novel crystal structure of Helicobacter pylori neutrophil-activating protein(HP-NAP)2009

    • Author(s)
      Osamu Tsuruta, Naoya Akao, Hideshi Yokoyama, Satoshi Fujii
    • Organizer
      Joint Conference of the Asian Crystallographic Association and Chinese Crystallography Society
    • Place of Presentation
      北京
    • Year and Date
      2009-10-24
    • Related Report
      2011 Final Research Report 2009 Annual Research Report
  • [Presentation] 膜タンパク質ストマチンの特異的切断プロテアーゼの二量体構造2009

    • Author(s)
      横山英志
    • Organizer
      静岡県立大学2008 USフォーラム
    • Place of Presentation
      静岡
    • Year and Date
      2009-08-05
    • Related Report
      2011 Final Research Report
  • [Presentation] 膜タンパク質ストマチンの特異的切断プロテアーゼの二量体構造2009

    • Author(s)
      横山英志
    • Organizer
      静岡県立大学 2008USフォーラム
    • Place of Presentation
      静岡県立大学
    • Year and Date
      2009-08-05
    • Related Report
      2009 Annual Research Report
  • [Presentation] テロメア四重鎖DNAを標的とするカチオン性ポルフィリンの抗腫瘍細胞増殖能2009

    • Author(s)
      石川吉伸
    • Organizer
      静岡県立大学2008 USフォーラム
    • Place of Presentation
      静岡
    • Year and Date
      2009-08-04
    • Related Report
      2011 Final Research Report
  • [Presentation] テロメア四重鎖DNAを標的とするカチオン性ポルフィリンの抗腫瘍細胞増殖能2009

    • Author(s)
      石川吉伸
    • Organizer
      静岡県立大学 2008USフォーラム
    • Place of Presentation
      静岡県立大学
    • Year and Date
      2009-08-04
    • Related Report
      2009 Annual Research Report
  • [Presentation] 膜タンパク質ストマチンの三次元構造2009

    • Author(s)
      横山英志
    • Organizer
      第55回日本薬学会東海支部総会・大会
    • Place of Presentation
      名古屋
    • Year and Date
      2009-07-11
    • Related Report
      2011 Final Research Report
  • [Presentation] 膜タンパク質ストマチンの三次元構造2009

    • Author(s)
      横山英志
    • Organizer
      第55回日本薬学会東海支部総会・大会(名古屋)
    • Place of Presentation
      名古屋市立大学
    • Year and Date
      2009-07-11
    • Related Report
      2009 Annual Research Report
  • [Presentation] インフルエンザウィルス由来金属酵素RNAポリメラーゼに対するジケト酸誘導体の分子ドッキングによる結合様式予測2009

    • Author(s)
      石川吉伸、藤井敏
    • Organizer
      第19回金属の関与する生体関連反応シンポジウム
    • Place of Presentation
      大阪
    • Year and Date
      2009-06-12
    • Related Report
      2011 Final Research Report
  • [Presentation] インフルエンザウィルス由来金属酵素RNAポリメラーゼに対するジケト酸誘導体の分子ドッキングによる結合様式予測2009

    • Author(s)
      石川吉伸, 藤井敏
    • Organizer
      第19回金属の関与する生体関連反応シンポジウム
    • Place of Presentation
      大阪大学
    • Year and Date
      2009-06-12
    • Related Report
      2009 Annual Research Report
  • [Remarks]

    • URL

      http://w3pharm.u-shizuoka-ken.ac.jp/.bukka/ishikawa/index.html

    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://db.u-shizuoka-ken.ac.jp/show/prof331.html

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://db.u-shizuoka-ken.ac.jp/show/prof331.html

    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • URL

      http://db.u-shizuoka-ken.ac.jp/show/prof331.html

    • Related Report
      2009 Annual Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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