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Development of biologically active compounds based on features of phosphonyl and phosphinyl functional groups

Research Project

Project/Area Number 21590126
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Drug development chemistry
Research InstitutionTokyo University of Pharmacy and Life Science

Principal Investigator

YOKOMATSU Tsutomu  東京薬科大学, 薬学部, 教授 (70158369)

Co-Investigator(Renkei-kenkyūsha) ANGIESKA Bzowska  ワルシャワ大学, 理学部, 教授
HIKISHIMA Sadao  東京薬科大学, 薬学部, 助教 (70398816)
YAMAGISHI Takehiro  東京薬科大学, 薬学部, 講師 (90297606)
Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2011: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2010: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2009: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Keywordsヌクレオチドアナログ / ジフルオロホスホン酸 / PNP阻害剤 / fragment-based drug design / ペプチドイソスター / 遷移状態アナログ / X線構造解析 / ジペプチドイソスター / 速度論的光学分割 / ホスフィン酸 / ジフルオロメチレンボスホン酸 / スフィンゴミエリナーゼ
Research Abstract

9-(5', 5'-Difluoro-5'-phosphonopentyl)-9-deazaguanine(DFPP-DG) was designed as a multi-substrate analogue inhibitor against purine nucleoside phosphorylase(PNP) on the basis of X-ray crystallographic data obtained for a binary complex of 9-(5', 5'-difluoro-5'-phosphonopentyl) guanine(DFPP-G) with calf-spleen PNP. DFPP-DG and its analogous compounds were adjusted by length of the linker achieved by the Sonogashira coupling reaction between a 9-deaza-9-iodoguanine derivative andω-alkynyldifluoromethylene phosphonates as a key reaction. DFPP-DG is a very potent PNP inhibitor with apparent inhibition constants(in the presence of 1 mM phosphate) of 4.4 nM and 8.1 nM vs calf spleen and human erythrocyte PNPs, respectively. One of its analogues, homo-DFPP-DG, with longer chain linking phosphonate and 9-deazaguanine is even more potent vs human enzyme, with an apparent inhibition constant of 5.3 nM(in the presence of 1 mM phosphate). The inhibition constant at equilibrium(1 mM phosphate concentration) with calf spleen PNP was shown to be K_<eqi>=85±13pM(pH7.0, 25℃).
In the research for developing phosphinyl dipeptide isostere(PDIs), we have found a new method for synthesis of optically active PDIs by using chemo-enzymatic processes. We also developed an efficient stereoselective synthesis of the Leu. Pro type PDI. In addition, we have also developed several new methods for synthesis of some new molecules having phosphonyl or phosphiniyl functional group.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (25 results)

All 2012 2011 2010 2009

All Journal Article (18 results) (of which Peer Reviewed: 10 results) Presentation (7 results)

  • [Journal Article] Diastereoselective synthesis of the Leu-Pro type phosphinyl dipeptide isostere2011

    • Author(s)
      T. Yamagishi, N. Tashiro, and T. Yokomatsu
    • Journal Title

      J. Org. Chem

      Volume: 76 Pages: 5472-5476

    • Related Report
      2011 Final Research Report
  • [Journal Article] A chemo-enzymatic synthesis of optically active 1, 1-diethoxyethyl(aminomethyl) phosphinates : useful chiral building blocks for phosphinyl dipeptide isosteres2011

    • Author(s)
      T. Yamagishi, J. Mori, T. Haruki, and T. Yokomatsu
    • Journal Title

      Tetrahedron : Asymmetry

      Volume: 22 Pages: 1358-1363

    • Related Report
      2011 Final Research Report
  • [Journal Article] Synthesis of New Class of Phosphinic Acids : Synthesis of Novel 4-Membered Cyclic Oxaphosphetanes via Intramolecular Mitsunobu Reaction of Bishydroxyalkylphosphinic acids2011

    • Author(s)
      B.Kaboudin, H.Haghighat, T.Yokomatsu
    • Journal Title

      Synthesis

      Pages: 3185-3189

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Diastereoselective synthesis of the Leu-Pro type phosphinyl dipeptide isostere2011

    • Author(s)
      T.Yamagishi, N.Tashiro, T.Yokomatsu
    • Journal Title

      J.Org.Chem.

      Volume: 76 Issue: 13 Pages: 5472-5476

    • DOI

      10.1021/jo200669r

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A chemo-enzymatic synthesis of optically active 1,1-diethoxyethyl(amino-methyl)phosphinates : useful chiral building blocks for phosphinyl dipeptide isosteres2011

    • Author(s)
      T.Yamagishi, J.Mori, T.Haruki, T.Yokomatsu
    • Journal Title

      Tetrahedron : Asymmetry

      Volume: 22 Issue: 12 Pages: 1358-1363

    • DOI

      10.1016/j.tetasy.2011.06.033

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 1.45A resolution crystal structure of recombinat PNP in complex with a pM multisubstrate analogue inhibitor bearing one feature of posutulated transition state2010

    • Author(s)
      G. Chojnowski, K. Breer, M. Narczyk, B. Wielgus-Kutrowska, H. Czapinska, M. Hashimoto, S. Hikishima, T. Yokomatsu, M. Bochtler, A. Girstun, K. Staro., A. Bzowska
    • Journal Title

      Biochem. Biophys. Res. Comm

      Volume: 391 Pages: 703-708

    • Related Report
      2011 Final Research Report
  • [Journal Article] Overexpressed protein may act as mops removing their ligands from host cells : A case study of calf PNP2010

    • Author(s)
      K. Breer, B. Wielgus-Kutrowska, A. Girstun, K. Staro., M. Hashimoto, S. Hikishima, T. Yokomatsu, A. Bzowska
    • Journal Title

      Biochem. Biophys. Res. Comm

      Volume: 391 Pages: 1203-1209

    • Related Report
      2011 Final Research Report
  • [Journal Article] Antiproliferative avtivity of purine nucleoside phosphorylase multisubstrate analogu inhibitors containing difluoromethyl phosphonic acid against leukaemia and lymphoma cells2010

    • Author(s)
      L. Glava.-Obrovac, M. Suver, S. Hikishima, M. Hashimoto, T. Yokomatsu, L. Magnowska, A. Bzowska
    • Journal Title

      Chem. Bio. Drug. Des

      Volume: 75 Pages: 392-399

    • Related Report
      2011 Final Research Report
  • [Journal Article] Structural-based design and synthesis of novel 9-deazaguanine derivatives having a phosphate mimic as multi-substrate analogue inhibitors for mammalian PNPs2010

    • Author(s)
      S. Hikishima, M. Hashimoto, L. Magnowska, A. Bzowska and T. Yokomatsu
    • Journal Title

      Bioorg. Med. Chem

      Volume: 18 Pages: 2275-2284

    • Related Report
      2011 Final Research Report
  • [Journal Article] 9-Deazaguanine derivatives connected by a linker to difluoromethylene phosphonic acid are slow-binding picomolar inhibitors of trimeric purine nucleoside phosphorylase2010

    • Author(s)
      K. Breer, L. Glavas-Obrovac, M. Suver, S. Hikishima, M. Hashimoto, T. Yokomatsu, B. Wielgus-Kutrowska, L. Magnowska, A. Bzowska
    • Journal Title

      FEBS Journal

      Volume: 277 Pages: 1747-1760

    • Related Report
      2011 Final Research Report
  • [Journal Article] Structural-based Design and Synthesis of Novel 9-Deazaguanine Derivatives having a Phosphate Mimic as Multi-substrate Analogue Inhibitors for Mammalian PNPs2010

    • Author(s)
      S.Hikishima, M.Hashimoto, L.Magnowska, A.Bzowska, T.Yokomatsu
    • Journal Title

      Bioorg.Med.Chem.

      Volume: 18 Pages: 2275-2284

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Antiproliferative Activity of Purine Nucleoside Phosphorylase Multisubstrate Analogue Inhibitors containing Difluoromethyl Phosphonic Acid against Leukaemia and Lymphoma Cells2010

    • Author(s)
      L.Glavas-Obrovac, M.Suver, S.Hikishima, M.Hashimoto, T.Yokomatsu, L.Magnowska, A.Bzowska
    • Journal Title

      Chem.Bio.Drug.Des.

      Volume: 75 Pages: 399-399

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 9-Deazaguanine Derivatives Connected by a Linker to Difluoromethylene Phosphonic Acid Are Slow-binding Picomolar Inhibitors of Trimeric Purine Nucleoside Phosphorylase2010

    • Author(s)
      K.Breer, L.Glavas-Obrovac, M.Suver, S.Hikishima, M.Hashimoto, T.Yokomatsu, B.Wielgus-Kutrowska, L.Magnowska, A.Bzowska
    • Journal Title

      FEBS Journal

      Volume: 277 Pages: 1747-1760

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 1.45Å resolution crystal structure of recombinat PNP in complex with a pM multisubstrate analogue inhibitor bearing one feature of posutulated transition state2010

    • Author(s)
      T.Yokomatsu, A.Bzowska, 他
    • Journal Title

      Biochem.Biophys.Res.Comm. 391

      Pages: 703-708

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Overexpressed protein may act as mops removing their ligands from host cells : A case study of calf PNP2010

    • Author(s)
      T.Yokomatsu, A.Bzowska, 他
    • Journal Title

      Biochem.Biophys.Res.Comm. 391

      Pages: 1203-1209

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structural-based design and synthesis of novel 9-deazaguanine derivatives having a phosphate mimic as multi-substrate analogue inhibitors for mammalian PNPs2010

    • Author(s)
      S.Hikishima, T.Yokomatsu, 他
    • Journal Title

      Bioorg.Med.Chem. 18

      Pages: 2275-2284

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Diastereoselective synthesis of γ-amino-δ-hydroxy-α, α-difluorophosphonates : A vehiclefor for the structure-activity relationship of SMA-7, a potent sphingomyelinase inhibitor2009

    • Author(s)
      T. Yamagishi, S. Muronoi, S. Hikishima, H. Shimeno, S. Soeda, and T. Yokomatsu
    • Journal Title

      J. Org. Chem

      Volume: 74 Pages: 6350-6353

    • Related Report
      2011 Final Research Report
  • [Journal Article] Diastereoselective synthesis of γ-amino-δ-hydroxy-α, α-difluorophosphonates : A vehiclefor for the structure-activity relationship of SMA-7, a potent sphingomyelinase inhibitor2009

    • Author(s)
      T.Yamagishi, T.Yokomatsu, 他
    • Journal Title

      J Org.Chem. 74

      Pages: 6350-6353

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] ホスフィニルジペプチイソスターの効率的合成を指向したアミノメチルホスフィナートの不斉アシル化反応2012

    • Author(s)
      春木晶充, 森淳一郎, 山岸丈洋, 横松力
    • Organizer
      日本薬学会第132年会
    • Place of Presentation
      札幌
    • Year and Date
      2012-03-30
    • Related Report
      2011 Annual Research Report
  • [Presentation] ホスフィニルジペプチイソスターの効率的合成を指向したアミノメチルホスフィナートの不斉アシル化反応2012

    • Author(s)
      春木晶充, 森淳一郎, 山岸丈洋
    • Organizer
      日本薬学会第132年会
    • Place of Presentation
      仙台
    • Related Report
      2011 Final Research Report
  • [Presentation] 非天然型の立体配置を有するホスフィニルジペプチドイソスターの合成研究2011

    • Author(s)
      春木晶充, 山岸丈洋, 横松力
    • Organizer
      日本薬学会第132年会
    • Place of Presentation
      静岡
    • Related Report
      2011 Final Research Report
  • [Presentation] SBDDを用いた新規PNP阻害剤の創製研究2010

    • Author(s)
      谷津智之, 疋島貞雄, Agnieszka Bzowska, 横松力
    • Organizer
      日本薬学会第130年会
    • Place of Presentation
      岡山
    • Related Report
      2011 Final Research Report
  • [Presentation]2010

    • Author(s)
      T. Haruki, H. Ichikawa, J. Mori, T. Yamagishi, T. Yokomatsu
    • Organizer
      18^<th> International Conference on Phosphorus Chemistry
    • Place of Presentation
      Wroclaw, Poland
    • Related Report
      2011 Final Research Report
  • [Presentation] SMase阻害剤を指向した新規SMA-7類縁体の合成研究2009

    • Author(s)
      野田祐介, 室野井真, 疋島貞雄, 山岸丈洋, 横松力
    • Organizer
      第35回反応と合成の進歩シンポジウム
    • Place of Presentation
      金沢
    • Related Report
      2011 Final Research Report 2009 Annual Research Report
  • [Presentation] SBDDを用いた新規PNP阻害剤の創製研究2009

    • Author(s)
      谷津智之, 疋島貞雄, Agnieszka Bzowska, 横松力
    • Organizer
      第28回メディシナルケミストリーシンポジウム
    • Place of Presentation
      東京
    • Related Report
      2011 Final Research Report 2009 Annual Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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