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Kinship analysis based on massive SNP genotype data

Research Project

Project/Area Number 21590746
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Legal medicine
Research InstitutionTokai University

Principal Investigator

OSAWA Motoki  東海大学, 医学部, 教授 (90213686)

Co-Investigator(Kenkyū-buntansha) KIMURA Ryousuke  琉球大学, 亜熱帯島嶼科学超域研究推進機構, 特命准教授 (00453712)
Co-Investigator(Renkei-kenkyūsha) INAOKA Yoshihiko  東海大学, 医学部, 助教 (50564689)
Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2011: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2010: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2009: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywords親子鑑定 / DNA多型 / SNP / マイクロアレイ / 遺伝子
Research Abstract

The multiplex system of 15 STR loci has been employed in kinship analysis, but its power is insufficient even for sibship. The microarray technique allows us to obtain massive SNP genotype data. As indices for the evaluation based on SNP, the proportion of identical-by-decent(IBD) numbers was preferable, in which linkage disequilibrium and minor allele frequency were conditioned. The minimum number to separate kinship from unrelated pairs was estimated to be approximately 500 and several thousands of SNPs for siblings and the second degree, respectively.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (30 results)

All 2011 2010 2009 Other

All Journal Article (13 results) (of which Peer Reviewed: 6 results) Presentation (17 results)

  • [Journal Article] IBS値に基づく血縁関係解析法の実用性2011

    • Author(s)
      田村友紀, 木村亮介, 稲岡斉彦, 田中佐知, 佐藤文子, 佐藤至, 大澤資樹
    • Journal Title

      DNA多型

      Volume: 19 Pages: 179-184

    • NAID

      10029668842

    • Related Report
      2011 Final Research Report
  • [Journal Article] DNAチップを用いたSNP解析による二者間の血縁関係判定2011

    • Author(s)
      稲岡斉彦, 田嶋敦, 田村友紀, 田中佐知, 佐藤文子, 筒井健太, 佐藤至, 大澤資樹
    • Journal Title

      DNA多型

      Volume: 19 Pages: 164-168

    • NAID

      10029668815

    • Related Report
      2011 Final Research Report
  • [Journal Article] Kinship analysis based on SNP data from microarray assay2011

    • Author(s)
      Inaoka Y, Tajima A, Tamura T, Satoh F, Osawa M
    • Journal Title

      Forensic Sci Int. Genetics

      Volume: 3(1)

    • Related Report
      2011 Final Research Report
  • [Journal Article] Re-evaluation of the identical-by-state method in pairwise kinship inference2011

    • Author(s)
      Tamura T, Osawa M, Inaoka Y, Tanaka S, Satoh F, Nakamura T
    • Journal Title

      Forensic Sci Int. Genetics

      Volume: 3(1)

    • Related Report
      2011 Final Research Report
  • [Journal Article] Postmortem molecular analysis to SIDS victims2011

    • Author(s)
      Osawa M, Inaoka Y, Hasegawa I, Satoh F
    • Journal Title

      Forensic Sci Int. Genetics

      Volume: 3(1)

    • Related Report
      2011 Final Research Report
  • [Journal Article] Postmortem molecular analysis to SIDS victims2011

    • Author(s)
      Osawa M, Inaoka Y, Hasegawa I, Satoh F
    • Journal Title

      Forensic Science International : Genetics

      Volume: 3(1) Issue: 1 Pages: e263-e264

    • DOI

      10.1016/j.fsigss.2011.08.128

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Kinship analysis based on SNP data from microarray assay2011

    • Author(s)
      Inaoka Y, Tajima A, Tamura T, Satoh F, Osawa M
    • Journal Title

      Forensic Science International : Genetics

      Volume: 3(1) Issue: 1 Pages: e275-e276

    • DOI

      10.1016/j.fsigss.2011.08.134

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Re-evaluation of the identical-by-state method in pairwise kinship inference2011

    • Author(s)
      Tamura T, Osawa M, Inaoka Y, Tanaka S, Satoh F, Nakamura T
    • Journal Title

      Forensic Science International : Genetics

      Volume: 3(1) Issue: 1 Pages: e244-e245

    • DOI

      10.1016/j.fsigss.2011.08.121

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] IdentifilerシステムでのIBS法による血縁関係解析2010

    • Author(s)
      大澤資樹, 田村友紀, 木村亮介, 稲岡斉彦, 早田慈, 長谷川巖, 佐藤文子, 佐藤至
    • Journal Title

      DNA多型

      Volume: 18 Pages: 152-156

    • NAID

      10029668214

    • Related Report
      2011 Final Research Report
  • [Journal Article] A common variation in EDAR is a genetic determinant of shovel-shaped incisors2009

    • Author(s)
      Kimura R, Yamaguchi T, Takeda M, Kondo O, Toma T, Haneji K, Hanihara T, Matsukusa H, Kawamura S, Maki K, Osawa M, Ishida H, Oota H
    • Journal Title

      Am J Hum Genet

      Volume: 85(4) Pages: 528-535

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] 集団頻度情報を用いないゲノムワイドなSNPタイピングによる親縁係数の推定2009

    • Author(s)
      木村亮介, 大澤資樹
    • Journal Title

      DNA多型

      Volume: 17 Pages: 14-17

    • NAID

      10025754017

    • Related Report
      2011 Final Research Report
  • [Journal Article] Evaluation of the allele-sharing approach, known as the IBS method, in kinship analysis the allele-sharing approach, known as the IBS method

    • Author(s)
      Tamura T, Osawa M, Kimura R, Inaoka Y, Tanaka S, Satoh F, Sato I
    • Journal Title

      Forensic Leg Med

      Volume: (in press)

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Evaluation of the allele-sharing approach, known as the IBS method, in kinship analysis

    • Author(s)
      Tamura T., Osawa M., Inaoka S, Kimura R., et al.
    • Journal Title

      Journal of Forensic and Legal Medicine

      Volume: (in press)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] 同胞関係推定におけるIBS値の応用2011

    • Author(s)
      田村友紀、大澤資樹、稲岡斉彦、田中佐知、佐藤文子
    • Organizer
      日本DNA多型学会第20回学術集会
    • Place of Presentation
      横浜、はまぎんホール
    • Year and Date
      2011-12-02
    • Related Report
      2011 Annual Research Report
  • [Presentation] ABO式血液型におけるDNA検査による遺伝子型判定法の比較2011

    • Author(s)
      稲岡斉彦, 筒井健太, 中西亜由美, 坪井秋男, 瀬戸良久, 長谷川巖, 佐藤文子, 大澤資樹
    • Organizer
      日本DNA多型学会第20回学術集会
    • Place of Presentation
      はまぎんホール(横浜市)
    • Year and Date
      2011-12-01
    • Related Report
      2011 Final Research Report
  • [Presentation] Kinship analysis based on SNP data from microarray assay2011

    • Author(s)
      Inaoka Y, Tajima A, Tamura T, Satoh F, Osawa M
    • Organizer
      24^<th> World Congress of the International Society for Forensic Genetics
    • Place of Presentation
      University of Vienna, Vienna, Austria(招待講演)
    • Year and Date
      2011-09-01
    • Related Report
      2011 Annual Research Report
  • [Presentation] Postmortem molecular analysis to SIDS victims2011

    • Author(s)
      Osawa M, Inaoka Y, Hasegawa I, Satoh F
    • Organizer
      24^<th> World Congress of the International Society for Forensic Genetics
    • Place of Presentation
      Vienna, Austria
    • Year and Date
      2011-08-31
    • Related Report
      2011 Final Research Report
  • [Presentation] Postmortem molecular analysis to SIDS victims2011

    • Author(s)
      Osawa M, Inaoka Y, Hasegawa I, Satoh F
    • Organizer
      24^<th> World Congress of the International Society for Forensic Genetics
    • Place of Presentation
      University of Vienna, Vienna, Austria
    • Year and Date
      2011-08-31
    • Related Report
      2011 Annual Research Report
  • [Presentation] Kinship analysis based on SNP data from microarray assay2011

    • Author(s)
      Inaoka Y, Tajima A, Tamura T, Satoh F, Osawa M
    • Organizer
      24^<th> World Congress of the International Society for Forensic Genetics
    • Place of Presentation
      Vienna, Austria
    • Year and Date
      2011-08-30
    • Related Report
      2011 Final Research Report
  • [Presentation] Re-evaluation of the identical-by-state method in pairwise kinship inference2011

    • Author(s)
      Tamura T, Osawa M, Inaoka Y, Tanaka S, Satoh F, Nakamura T
    • Organizer
      24^<th> World Congress of the International Society for Forensic Genetics
    • Place of Presentation
      Vienna, Austria
    • Year and Date
      2011-08-30
    • Related Report
      2011 Final Research Report
  • [Presentation] 原因不明の突然死に対する死後遺伝子解析2010

    • Author(s)
      大澤資樹
    • Organizer
      日本DNA多型学会第19回学術集会・シンポジウム
    • Place of Presentation
      三島市民文化会館(静岡県)
    • Year and Date
      2010-11-19
    • Related Report
      2010 Annual Research Report
  • [Presentation] IBS値に基づく血縁関係解析法の実用性2010

    • Author(s)
      田村友紀, 木村亮介, 稲岡斉彦, 田中佐知, 佐藤文子, 佐藤至, 大澤資樹
    • Organizer
      日本DNA多型学会第19回学術集会
    • Place of Presentation
      三島市民文化会館(三島市)
    • Year and Date
      2010-11-18
    • Related Report
      2011 Final Research Report
  • [Presentation] STR多型解析からの二者間血縁関係判定におけるIBS評価法2010

    • Author(s)
      大澤資樹、田村友紀、木村亮介、稲岡斉彦、田中佐知、早田慈、長谷川巌、佐藤文子、佐藤至
    • Organizer
      日本人類遺伝学会第55回大会日本人類遺伝学会第55回大会
    • Place of Presentation
      大宮ソニックシティ(さいたま市)
    • Year and Date
      2010-10-28
    • Related Report
      2011 Final Research Report
  • [Presentation] STR多型解析からの二者間血縁関係判定におけるIBS評価法2010

    • Author(s)
      大澤資樹
    • Organizer
      日本人類遺伝学会第55回大会
    • Place of Presentation
      大宮ソニックシティ(埼玉県)
    • Year and Date
      2010-10-28
    • Related Report
      2010 Annual Research Report
  • [Presentation] Postmortem molecular analysis of sudden deaths from unknown causes2010

    • Author(s)
      Osawa M
    • Organizer
      BIT's 1st Annual World Congress of Forensics
    • Place of Presentation
      Dalian Bayshore Hotel, Dalian, China
    • Year and Date
      2010-10-23
    • Related Report
      2011 Final Research Report
  • [Presentation] IdentifilerシステムでのIBS法による血縁関係解析2009

    • Author(s)
      大澤資樹
    • Organizer
      日本DNA多型学会
    • Place of Presentation
      久留米大学医学部(福岡県)
    • Year and Date
      2009-11-20
    • Related Report
      2009 Annual Research Report
  • [Presentation] 個人識別におけるAmpFlSTR Identifiler Kitを用いたSTR解析の有用性2009

    • Author(s)
      田村友紀, 大澤資樹, 田村佐和, 木村亮介, 稲岡斉彦, 早田慈, 山本佳世, 石割敦也, 鈴木隆徳, 佐藤至
    • Organizer
      日本法科学技術学会第15回学術集会
    • Place of Presentation
      ホテルフロラシオン青山(東京都)
    • Year and Date
      2009-11-12
    • Related Report
      2011 Final Research Report
  • [Presentation] IdentifilerシステムでのIBS法による血縁関係解析2009

    • Author(s)
      大澤資樹, 田村友紀, 木村亮介, 稲岡斉彦, 早田慈, 長谷川巖, 佐藤文子, 佐藤至
    • Organizer
      日本DNA多型学会第18回学術集会
    • Place of Presentation
      久留米大学医学部筑水会館(久留米市)
    • Year and Date
      2009-10-28
    • Related Report
      2011 Final Research Report
  • [Presentation] Evaluation of the IBS method in relationship analysis from short tandem repeat data2009

    • Author(s)
      Osawa M, Kimura R, Tamura T, Soda M, Satoh F, Hasegawa I, Sato I
    • Organizer
      The American Society of Human Genetics 59th annual meeting
    • Place of Presentation
      Hawaii Convention Center, Honolulu, USA
    • Year and Date
      2009-10-22
    • Related Report
      2011 Final Research Report
  • [Presentation] A nonsynonymous SNP in EDAR is associated with tooth shoveling2009

    • Author(s)
      Kimura R, Yamaguchi Y, Maki K, Takeda M, Kondo O, Hanihara T, Osawa M, Ihida H, Kawamura S, Oota H
    • Organizer
      The American Society of Human Genetics 59th Annual Meeting
    • Place of Presentation
      Hawaii Convention Center, Honolulu, USA
    • Year and Date
      2009-10-22
    • Related Report
      2011 Final Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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