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Development of a method for analysis of oral microbiota applicable to a large-scale population

Research Project

Project/Area Number 21592652
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Social dentistry
Research InstitutionNihon University

Principal Investigator

NAKANO Yoshio  日本大学, 歯学部, 准教授 (80253459)

Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2011: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2010: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2009: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywords予防歯科学 / 細菌叢 / 16S rRNA / T-RFLP
Research Abstract

There are several hundreds species of oral bacteria in human oral cavities. We constructed a system for effective calculation using Terminal Restriction Fragment Length Polymorphism, T-RFLP, in order to calculate compositions of oral microbial species. We succeeded in estimating compositions of bacterial species by a Monte Carlo algorithm. This program estimates proportional compositions by minimizing distances between peak values and the relative abundance of each group, containing several species, estimated from peak areas of capil-lary electrophoresis for T-RFLP analysis. In addition, databases of 16S rRNA sequences from oral and intestine microbiota to calculate bacterial composition by T-RFLP analyses.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (17 results)

All 2012 2011 2010 Other

All Journal Article (8 results) (of which Peer Reviewed: 8 results) Presentation (6 results) Remarks (3 results)

  • [Journal Article] Discrimination of the oral microbiota associated with high hydrogen sulfide and methyl mercaptan production2012

    • Author(s)
      T. Takeshita, N. Suzuki, Y. Nakano, M. Yasui, M. Yoneda, Y. Shimazaki, T. Hirofuji, and Y. Yamashita
    • Journal Title

      Sci. Rep

      Volume: 2 Pages: 215-215

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Discrimination of the oral microbiota associated with high hydrogen sulfide and methyl mercaptan production2012

    • Author(s)
      T.Takeshita
    • Journal Title

      Scientific Reports

      Volume: 2 Issue: 1 Pages: 215-215

    • DOI

      10.1038/srep00215

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Enteral tube feeding alters the oral indigenous microbiota in elderly adults2011

    • Author(s)
      T. Takeshita, M. Yasui, M. Tomioka, Y. Nakano, Y. Shimazaki, and Y. Yamashita
    • Journal Title

      Appl. Environ. Microbiol

      Volume: 77 Pages: 6739-6745

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Enteral tube feeding alters the oral indigenous microbiota in elderly adults2011

    • Author(s)
      T.Takeshita
    • Journal Title

      Appl.Environ.Microbiol.

      Volume: 77 Issue: 19 Pages: 6739-6745

    • DOI

      10.1128/aem.00651-11

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Prediction of plausible bacterial compo-sition based on terminal restriction fragment length polymorphisms using a Monte Carlo method2010

    • Author(s)
      Y. Nakano, T. Takeshita, M. Yasui, and Y. Yamashita
    • Journal Title

      Microb. Ecol

      Volume: 60 Pages: 365-373

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Relationship between oral malodor and the global composition of indigenous bacterial populations in saliv2010

    • Author(s)
      T. Takeshita, N. Suzuki, Y. Nakano, Y. Shimazaki, M. Yoneda, T. Hirofuji, and Y. Yamashita
    • Journal Title

      Appl. Environ. Microbiol

      Volume: 3 Pages: 2806-2814

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Relationship between oral malodor and the global composition of indigenous bacterial populations in saliva.2010

    • Author(s)
      T.Takeshita, N.Suzuki, Y.Nakano, 他4名
    • Journal Title

      Appl.Environ.Microbiol.

      Volume: 76 Pages: 2806-2814

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Prediction of plausible bacterial composition based on terminal restriction fragment length polymorphisms using a Monte Carlo method.2010

    • Author(s)
      Y.Nakano, T.Takeshita, M.Yasui, Y.Yamashita.
    • Journal Title

      Microb.Ecol.

      Volume: 60 Pages: 364-373

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] 塩化亜鉛溶液を用いた洗口による口腔常在フローラの変化2011

    • Author(s)
      鈴木奈央, 中野善夫, 畑野優子, 米田雅裕, 横瀬勝美, 桑田文幸, 廣藤卓雄
    • Organizer
      日本歯科保存学会2011年度秋季学術大会(第135回)
    • Place of Presentation
      大阪億再交流センター(大阪府)
    • Year and Date
      2011-10-20
    • Related Report
      2011 Final Research Report
  • [Presentation] 塩化亜鉛溶液を用いた洗口による口腔常在フローラの変化2011

    • Author(s)
      鈴木奈央
    • Organizer
      第135回日本歯科保存学会秋季学術大会
    • Place of Presentation
      大阪国際交流センター(大阪府)
    • Year and Date
      2011-10-20
    • Related Report
      2011 Annual Research Report
  • [Presentation] 硫化水素およびメチルメルカプタン高産生口腔異常フローラの細菌構成2011

    • Author(s)
      竹下徹, 鈴木奈央, 中野善夫, 米田雅裕, 廣藤卓雄, 山下喜久
    • Organizer
      第53回歯科基礎医学会
    • Place of Presentation
      長良川国際会議場(岐阜県)
    • Year and Date
      2011-10-01
    • Related Report
      2011 Final Research Report
  • [Presentation] 塩化亜鉛溶液を用いた洗口による口腔内細菌叢の変化の解析2010

    • Author(s)
      鈴木奈央, 中野善夫, 畑野優子, 米田雅裕, 横瀬勝美, 桑田文幸, 廣藤卓雄
    • Organizer
      第52回歯科基礎医学会
    • Place of Presentation
      タワーホール船堀(東京都)
    • Year and Date
      2010-09-21
    • Related Report
      2011 Final Research Report
  • [Presentation] 塩化亜鉛溶液を用いた洗口による口腔内細菌叢の変化の解析2010

    • Author(s)
      鈴木奈央, 中野善夫, 畑野優子, 米田雅裕, 横瀬勝美, 桑田文幸, 廣藤卓雄
    • Organizer
      第52回歯科基礎医学会
    • Place of Presentation
      タワーホール船堀(東京)
    • Year and Date
      2010-09-21
    • Related Report
      2010 Annual Research Report
  • [Presentation] 口腔内細菌叢解析による口臭予測2010

    • Author(s)
      中野善夫
    • Organizer
      第43回日本無菌生物ノートバイオロジー学会総会
    • Place of Presentation
      日本大学歯学部(東京都)
    • Year and Date
      2010-01-21
    • Related Report
      2011 Final Research Report 2009 Annual Research Report
  • [Remarks]

    • URL

      http://trf-alignment.appspot.com

    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://trflp.info/trfmaw/

    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://trflp.info/trfmaw/

    • Related Report
      2011 Annual Research Report

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Published: 2009-04-01   Modified: 2023-01-13  

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