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Elucidation of genetic systems conducting an early development of plant germ cells

Research Project

Project/Area Number 21678001
Research Category

Grant-in-Aid for Young Scientists (S)

Allocation TypeSingle-year Grants
Research Field Breeding science
Research InstitutionNational Institute of Genetics

Principal Investigator

NONOMURA Kenichi  国立遺伝学研究所, 実験圃場, 准教授 (10291890)

Project Period (FY) 2009 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥69,550,000 (Direct Cost: ¥53,500,000、Indirect Cost: ¥16,050,000)
Fiscal Year 2012: ¥15,600,000 (Direct Cost: ¥12,000,000、Indirect Cost: ¥3,600,000)
Fiscal Year 2011: ¥15,600,000 (Direct Cost: ¥12,000,000、Indirect Cost: ¥3,600,000)
Fiscal Year 2010: ¥18,200,000 (Direct Cost: ¥14,000,000、Indirect Cost: ¥4,200,000)
Fiscal Year 2009: ¥20,150,000 (Direct Cost: ¥15,500,000、Indirect Cost: ¥4,650,000)
Keywords植物 / 生殖 / 減数分裂 / RNA / 発生 / 遺伝子 / イネ
Research Abstract

Germline development and meiosis are pivotal for all genetic events, and elucidation of the molecular mechanisms is an important subject for both basic and applied genetics. Here I used genetic resources of rice, a model crop, and analyzed the functions of two RNA-binding proteins, MEL1 and MEL2. MEL1 is known to play important roles in early meiotic processes. In this study, 21-and 24-nucleotides small RNAs that bind to MEL1 (mipsRNAs) were identified. Mapping onto the rice genome revealed that the mipsRNAs were processed from 700 species of long intergenic non-coding RNAs (lincRNAs). MEL2 functions to promote mitosis-meiosis transition in appropriate timing. This study revealed that RNA recognition motif (RRM) of MEL2 preferentially binded to the AU-rich RNA sequences (UUAGUU(U/A)(U/G)(A/U/G)U), and that 249 rice genes conserved the AU-rich consensus sequence. Identification of genes directly targeted by MEL1 and MEL2 will open the door to understanding transcriptional or post-transcriptional regulatory networks mediated by RNA-binding proteins in plant reproduction and meiosis.

Assessment Rating
Verification Result (Rating)

A-

Report

(6 results)
  • 2014 Research Progress Assessment (Verification Result) ( PDF )
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (54 results)

All 2013 2012 2011 2010 2009 Other

All Journal Article (7 results) (of which Peer Reviewed: 4 results) Presentation (41 results) (of which Invited: 2 results) Book (1 results) Remarks (5 results)

  • [Journal Article] A novel RNA recognition motif protein is required for premeiotic GI/S-phase transition in rice (Oryza sativa L.)2011

    • Author(s)
      Nonomura, K.I., Eiguchi, M., Nakano, M., Takashima, K., Komeda, N., Fukuchi S., Miyazaki, S., et al.
    • Journal Title

      PLos Genetics

      Volume: 7

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Ovule is a lateral organ finally differentiated from the termination floral meristem in rice2011

    • Author(s)
      Yamaki, S., Nagato, Y., Kurata, N., Nonomura, K.I.
    • Journal Title

      Dev. Bial.

      Volume: 361 Pages: 208-216

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] A novel RNA-recognition -motif protein is required for premeiotic G1/Sphase transition in rice (Oryza sativa L.)2011

    • Author(s)
      Nonomura, K.I., 他9名(責任著者:Nonomura, K.I.)
    • Journal Title

      PLoS Genetics

      Volume: 7

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Ovule is a lateral organ finally differentiated from the terminating floral meristem in rice2011

    • Author(s)
      Yamaki, S., 他3名(責任著者:Nonomura, K.I.)
    • Journal Title

      Developmental Biology

      Volume: 351 Pages: 208-216

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 減数分裂 : 相方を探すための植物染色体のダイナミックな挙動2009

    • Author(s)
      米田典央、野々村賢一
    • Journal Title

      生物の化学遺伝

      Volume: 63(5月号) Pages: 48-54

    • Related Report
      2012 Final Research Report
  • [Journal Article] 減数分裂:相方を探すための植物染色体のダイナミックな挙動2009

    • Author(s)
      米田典央、野々村賢
    • Journal Title

      生物の科学遺伝(5月号)特集I:植物染色体の最前線 63

      Pages: 48-54

    • Related Report
      2009 Annual Research Report
  • [Journal Article] 受粉と受精2009

    • Author(s)
      野々村賢
    • Journal Title

      種子の科学とバイオテクノロジー

      Pages: 13-16

    • Related Report
      2009 Annual Research Report
  • [Presentation] MEL1 Argonaute controlling early germ-cell development and meiosis in rice2013

    • Author(s)
      Nonomura, K. I.
    • Organizer
      Japan-China Joint symposium on Rice Developmental Biology
    • Place of Presentation
      別府、大分
    • Year and Date
      2013-03-08
    • Related Report
      2012 Annual Research Report
  • [Presentation] MEL1 Argonaute controlling early germ-cell development and meiosis in rice2013

    • Author(s)
      Nonoura, K.I.
    • Organizer
      Japan-China Joint symposium on Rice Developmental Biology
    • Place of Presentation
      Oita
    • Related Report
      2012 Final Research Report
  • [Presentation] Biogenesis of small RNAs interacting with rice MEL1, a germ—cell specific AGO protein2012

    • Author(s)
      Komiya, R., Ohyanagi, H., Niihama, M., Watanabe, T., Tsutsui, Y., Kaminuma, E., Kurata, N. Nonomura, K. I
    • Organizer
      Function and production of non—coding RNAs and their regulatory mechanisms, 35th Annual Meeting of Molecular Biology Society of japan
    • Place of Presentation
      福岡
    • Year and Date
      2012-12-14
    • Related Report
      2012 Annual Research Report
  • [Presentation] RNA—mediated regulatory systems for meiosis progression in rice.2012

    • Author(s)
      Nonomura, K. I.
    • Organizer
      Seminar in Temasek Life Sciences Laboratory
    • Place of Presentation
      シンガポール
    • Year and Date
      2012-12-05
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] RNAを介した植物減数分裂の遺伝的制御機構と細胞間コミュニケーション2012

    • Author(s)
      野々村賢一
    • Organizer
      日本遺伝学会第84回大会
    • Place of Presentation
      福岡
    • Year and Date
      2012-09-26
    • Related Report
      2012 Annual Research Report
  • [Presentation] イネ生殖特異的AGO, MEL1に結合するsmall RNAの生合成経路2012

    • Author(s)
      小宮怜奈、(6名略)、野々村賢一
    • Organizer
      日本育種学会2012年秋季大会
    • Place of Presentation
      京都
    • Year and Date
      2012-09-15
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] イネ葯壁内層で特異的に発現する2つの転写因子パラログは減数分裂の進行に重要である2012

    • Author(s)
      小野聖二郎、野々村賢一
    • Organizer
      日本育種学会第122回講演会
    • Place of Presentation
      京都
    • Year and Date
      2012-09-15
    • Related Report
      2012 Annual Research Report
  • [Presentation] RNA recognition motif of rice MEL2 regulating transition from mitosis to meiosis binds to U-rich RNA conserved sequence2012

    • Author(s)
      Saori Miyazaki, Ken-Ichi Nonomura
    • Organizer
      第53回日本植物生理学会年会
    • Place of Presentation
      京都
    • Year and Date
      2012-03-18
    • Related Report
      2011 Annual Research Report
  • [Presentation] イネ生殖細胞特異的Argonaute蛋白質MEL1と結合するsmall RNAsの同定2012

    • Author(s)
      小宮怜奈, 9名略、野々村賢一
    • Organizer
      第53回日本植物生理学会年会
    • Place of Presentation
      京都
    • Year and Date
      2012-03-18
    • Related Report
      2011 Annual Research Report
  • [Presentation] RNA-binding protein play central roles in germline cells to go through premeiosis and early meiosis in rice2012

    • Author(s)
      Ken-Ichi Nonomura
    • Organizer
      Plant Reproduction for Food 2012
    • Place of Presentation
      メルボルン、オーストラリア
    • Year and Date
      2012-02-13
    • Related Report
      2011 Annual Research Report
  • [Presentation] RNA-binding protein play central roles in germline cells to go through premeiosis and early meiosis in rice2012

    • Author(s)
      Nonomura, K.I.
    • Organizer
      Plant Reproduction for Food 2012
    • Place of Presentation
      Melbourne, Australia
    • Related Report
      2012 Final Research Report
  • [Presentation] RNA recognition motif of rice MEL2 regulating transition from mitosis to meiosis binds to U-rich RNA conserved sequence2012

    • Author(s)
      Miyazaki, S., Nonomura, K.I.
    • Organizer
      第53回日本植物整理学会年会
    • Place of Presentation
      京都
    • Related Report
      2012 Final Research Report
  • [Presentation] Biogenesis of small RNAs interacting with rice MEL1, a germ-sell specific AGO protein2012

    • Author(s)
      Komiya, R., Ohyanagi, H., Niihama, M., Watanabe, T., Tsutsui, T., Kaminuma, E., Kurata, N., Nonomura, K.I.
    • Organizer
      35th Annual Meet. Mol. Biol. Society of japan
    • Place of Presentation
      Fukuoka
    • Related Report
      2012 Final Research Report
  • [Presentation] イネ生殖細胞特異的Argonaute蛋白質MEL1と結合するsmall RNAsの同定2011

    • Author(s)
      小宮怜奈, 8名略、野々村賢一
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2011-12-13
    • Related Report
      2011 Annual Research Report
  • [Presentation] A novel small RNA pathway regulates pre-meiotic germline development and cell division in plants2011

    • Author(s)
      Ken-Ichi Nonomura
    • Organizer
      日独二国間交流事業セミナー"Frontiers of Plant Chromosome Science : Centromeres and Artificial Chromosomes"
    • Place of Presentation
      ガータスレーベン、ドイツ
    • Year and Date
      2011-10-31
    • Related Report
      2011 Annual Research Report
  • [Presentation] イネGYPSY EMBRYO遺伝子は穂の枝分かれと花分裂組織の有限性を制御する2011

    • Author(s)
      山木辰一郎、長戸康郎, 野々村賢一, 倉田のり
    • Organizer
      日本育種学会平成23年度秋季講演会
    • Place of Presentation
      福井
    • Year and Date
      2011-09-22
    • Related Report
      2011 Annual Research Report
  • [Presentation] イネ減数分裂における交叉型組換え干渉はシナプトネマ複合体ZYP1により制御される2011

    • Author(s)
      米田典央、野々村賢一
    • Organizer
      日本育種学会第119回講演会
    • Place of Presentation
      横浜市立大学
    • Year and Date
      2011-03-29
    • Related Report
      2010 Annual Research Report
  • [Presentation] イネ生殖細胞特異的Argonaute蛋白質MEL1と結合するsmall RNAsの同定2011

    • Author(s)
      小宮怜奈、野々村賢一, 他8名
    • Organizer
      第52回日本植物生理学会年会
    • Place of Presentation
      東北大学
    • Year and Date
      2011-03-20
    • Related Report
      2010 Annual Research Report
  • [Presentation] イネ生殖細胞特異的Argonauteタンパク質MEL1と結合するsmall RNAsの同定2011

    • Author(s)
      小宮怜奈、野々村賢一ら
    • Organizer
      第5回日本エピジェネティクス研究会年会
    • Place of Presentation
      熊本
    • Related Report
      2012 Final Research Report 2011 Annual Research Report
  • [Presentation] A novel small RNA pathway regulates pre-meiotic germline development and cell division in plants2011

    • Author(s)
      Nonomura, K.I.
    • Organizer
      Frontiers of Plant Chromosome Research : Centromeres and Artificial Chromosomes
    • Place of Presentation
      Germany
    • Related Report
      2012 Final Research Report
  • [Presentation] 減数分裂前のイネ生殖細胞発生を制御する新規のRNA経路2011

    • Author(s)
      野々村賢一、小宮怜奈、宮崎さおり
    • Organizer
      日本遺伝学会第83回大会
    • Place of Presentation
      京都
    • Related Report
      2012 Final Research Report 2011 Annual Research Report
  • [Presentation] 植物の減数分裂前G1/S移行を制御する新規RRM蛋白質の解析2010

    • Author(s)
      野々村賢一, 他7名
    • Organizer
      第33回日本分子生物学会年会
    • Place of Presentation
      神戸ポートアイランド
    • Year and Date
      2010-12-09
    • Related Report
      2010 Annual Research Report
  • [Presentation] イネ花粉突然変異体Tos0445の分子遺伝学的解析2010

    • Author(s)
      上田健治、野々村賢一, 他8名
    • Organizer
      日本植物学会第74回大会
    • Place of Presentation
      中部大学
    • Year and Date
      2010-09-10
    • Related Report
      2010 Annual Research Report
  • [Presentation] 植物の減数分裂への移行を制御するRNA結合蛋白質の解析2010

    • Author(s)
      野々村賢一
    • Organizer
      日本植物学会第74回大会
    • Place of Presentation
      中部大学
    • Year and Date
      2010-09-09
    • Related Report
      2010 Annual Research Report
  • [Presentation] イネ減数分裂におけるシナプトネマ複合体タンパク質ZYP1の機能2010

    • Author(s)
      米田典央、野々村賢一
    • Organizer
      日本育種学会第117回春季大会
    • Place of Presentation
      京都
    • Related Report
      2012 Final Research Report
  • [Presentation] 植物の減数分裂への移行を制御するRNA結合蛋白質の解析2010

    • Author(s)
      野々村賢一
    • Organizer
      日本植物学会第74回大会ワークショップ
    • Place of Presentation
      中央大学
    • Related Report
      2012 Final Research Report
  • [Presentation] 植物の減数分裂前G1/S移行を制御する新規RRMタンパク質の解析2010

    • Author(s)
      野々村賢一、永口貢、宮崎さおり、米田典央、宮尾安藝雄、廣近洋彦、倉田のり
    • Organizer
      第33回日本分子生物学会年会
    • Place of Presentation
      神戸
    • Related Report
      2012 Final Research Report
  • [Presentation] What triggers the initiation of primordial plant germ cells?2009

    • Author(s)
      Shinichiro Yamaki, Ken-Ichi Nonomura
    • Organizer
      32nd Annual Meeting of Molocular Biology Society of Japan
    • Place of Presentation
      Yokohama, Japan
    • Year and Date
      2009-12-11
    • Related Report
      2009 Annual Research Report
  • [Presentation] 植物が減数分裂を同調化させるメカニズム2009

    • Author(s)
      野々村賢一
    • Organizer
      第60回染色体学会年会
    • Place of Presentation
      松江市
    • Year and Date
      2009-11-13
    • Related Report
      2009 Annual Research Report
  • [Presentation] Analysis of putative RNA-binding proteins promoting plant germ-cell development in rice2009

    • Author(s)
      野々村賢一, 他5名
    • Organizer
      9th International Plant Molecular Biology Congress
    • Place of Presentation
      St.Louis, USA
    • Year and Date
      2009-10-27
    • Related Report
      2009 Annual Research Report
  • [Presentation] A rice gene regulating proper timing of the transition to meiosis2009

    • Author(s)
      野々村賢一
    • Organizer
      China-Japan Rice Developmental Biology Meeting
    • Place of Presentation
      Hangzhou, China
    • Year and Date
      2009-10-09
    • Related Report
      2009 Annual Research Report
  • [Presentation] イネの胚珠分化に異常を示す osmads 13変異体の解析2009

    • Author(s)
      野々村賢一, 他2名
    • Organizer
      日本育種学会第116回講演会
    • Place of Presentation
      札幌市
    • Year and Date
      2009-09-25
    • Related Report
      2009 Annual Research Report
  • [Presentation] 植物生殖細胞の初期発生過程における染色体ダイナミックス2009

    • Author(s)
      野々村賢一, 他1名
    • Organizer
      日本遺伝学会第81回大会
    • Place of Presentation
      松本市
    • Year and Date
      2009-09-17
    • Related Report
      2009 Annual Research Report
  • [Presentation] Plant germ-cell development is supported by RNA-mediated genetic systems2009

    • Author(s)
      野々村賢一
    • Organizer
      The Opening Symposium of Plant Genomics and Breeding Institute
    • Place of Presentation
      Soeul, Korea
    • Year and Date
      2009-09-11
    • Related Report
      2009 Annual Research Report
  • [Presentation] Plant germ-cell development is supported by DNA-mediated genetic systems2009

    • Author(s)
      Nonomura, K.I.
    • Organizer
      Symposium of Plant Genomics and Breed. Inst.
    • Place of Presentation
      Seul, Korea
    • Related Report
      2012 Final Research Report
  • [Presentation] What triggers the initiation of primordial plant germ cells?2009

    • Author(s)
      Yamaki, S., Nonomura, K.I.
    • Organizer
      32nd Annual Meeting of Molocular Biology Society of Japan
    • Place of Presentation
      Yokohama
    • Related Report
      2012 Final Research Report
  • [Presentation] A rice gene regulation proper timing of the transition to meiosis2009

    • Author(s)
      Nonomura, K.I.
    • Organizer
      China-Japan Rice Developmental Biology Meeting
    • Place of Presentation
      Hangzhou, China
    • Related Report
      2012 Final Research Report
  • [Presentation] 植物が減数分裂を同調化させるメカニズム2009

    • Author(s)
      野々村賢一
    • Organizer
      第60回染色体学会年会
    • Place of Presentation
      松江
    • Related Report
      2012 Final Research Report
  • [Presentation] 減数分裂の進行に必須のイネMEL2遺伝子はイネ科植物で保存されている2009

    • Author(s)
      野々村賢一、中野睦子、福地佐斗志、永口貢、宮尾安藝雄、廣近洋彦、倉田のり
    • Organizer
      日本育種学会第116回講演会
    • Place of Presentation
      札幌
    • Related Report
      2012 Final Research Report
  • [Presentation] Analysis of putative RNA-binding proteins promoting plant germ-cell development in rice2009

    • Author(s)
      Nonomura, K.I., et al.
    • Organizer
      9th Internat. Plant Mol. Biol. Congr.
    • Place of Presentation
      St. Louis, USA
    • Related Report
      2012 Final Research Report
  • [Presentation] What triggers the initiation of primordial plant germ cells?2009

    • Author(s)
      Nonomura, K.I., Yamaki, S.
    • Organizer
      32nd Ann. Meet. Mol. Biol. Society of Japan
    • Place of Presentation
      Yokohama
    • Related Report
      2012 Final Research Report
  • [Book] 「受粉と受精」、種子の科学とバイオテクノロジー2009

    • Author(s)
      野々村賢一
    • Publisher
      学会出版センター(原田久也監修)
    • Related Report
      2012 Final Research Report
  • [Remarks]

    • URL

      http://www.nig.ac.jp/labs/ExpFarm/jweb/jtop/jlab.html

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www.nig.ac.jp/Research-Highlights/986/125.html

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www.nig.ac.jp/Research-Highlights/374/282.html

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www.nig.ac.jp/labs/ExpFarm/jweb/jtop/jlab.html

    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • URL

      http://www.nig.ac.jp/labs/ExpFarm/jweb/jtop/jlab.html

    • Related Report
      2009 Annual Research Report

URL: 

Published: 2009-04-01   Modified: 2019-07-29  

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