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Hypothesis Discovery via Knowledge Extraction and Generalization

Research Project

Project/Area Number 21700169
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Intelligent informatics
Research InstitutionKobe University

Principal Investigator

SEKI Kazuhiro  Kobe University, 自然科学系先端融合研究環, 助教 (30444566)

Project Period (FY) 2009 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2010: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2009: ¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
Keywords仮説生成 / 遺伝子機能アノテーション / イベント類似度
Research Abstract

Owing to the recent advances in computer technologies, a large amount of texts have become available. This research attempted to automate highly intellectual tasks analyzing such texts, which usually require labor-intensive work and domain knowledge. Specifically, we investigated gene function annotation and hypothesis discovery. For the former, we proposed an approach based on semantic kernels and achieved both efficient and effective gene annotation as compared with existing works. For the latter, we defined event similarity to spot valid hypotheses. Evaluative experiments revealed that our proposed approach was more stable and effective than previous frequency-based approaches.

Report

(3 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • Research Products

    (32 results)

All 2011 2010 2009 Other

All Journal Article (17 results) (of which Peer Reviewed: 8 results) Presentation (15 results)

  • [Journal Article] Tackling Class Imbalance and Data Scarcity in Literature-Based Gene Function Annotation.2011

    • Author(s)
      Mathieu Blon, Kazuhiro Seki, Kuniaki Uehara.
    • Journal Title

      In Proceedings of the 31th annual international ACM SIGIR conference on research and development in information retrieval (SIGIR 2011)

    • Related Report
      2010 Final Research Report
  • [Journal Article] Opinionated Document Retrieval Using Subjective Triggers.2011

    • Author(s)
      Kazuhiro Seki, Kuniaki Uehara.
    • Journal Title

      Journal of the American Society for Information Science and Technology (JASIST) Vol.62, No.5

      Pages: 861-876

    • Related Report
      2010 Final Research Report
  • [Journal Article] Unsupervised Learning of Stroke Tagger for Online Kanji Handwriting Recognition.2010

    • Author(s)
      Mathieu Blondel, Kazuhiro Seki, Kuniaki Uehara.
    • Journal Title

      In Proceedings of the 20th International Conference on Pattern Recognition (ICPR 2010)

      Pages: 1973-1976

    • Related Report
      2010 Final Research Report
  • [Journal Article] Impact and Prospect of Social Bookmarks for Bibliographic Information Retrieval.2010

    • Author(s)
      Kazuhiro Seki.
    • Journal Title

      In Proceedings of the 10th ACM/IEEE-CS Joint Conference on Digital Libraries (JCDL 2010).

      Pages: 357-360

    • Related Report
      2010 Final Research Report
  • [Journal Article] Hypothesis Generation and Ranking Based on Event Similarities.2010

    • Author(s)
      Taiki Miyanishi, Kazuhiro Seki, Kuniaki Uehara.
    • Journal Title

      In Proceedings of the 25th Annual ACM Symposium On Applied Computing (SAC 2010).

      Pages: 1552-1558

    • Related Report
      2010 Final Research Report
  • [Journal Article] リンク構造とコンテンツを複合的に用いた極少訓練事例によるスプログ検出2010

    • Author(s)
      吉川幹人, 佐藤翔平, 関和広, 上原邦昭
    • Journal Title

      情報処理学会論文誌:データベース Vol.3, No.1

      Pages: 29-37

    • NAID

      110007990071

    • Related Report
      2010 Final Research Report
  • [Journal Article] Impact and Prospect of Social Bookmarks for Bibliographic Information Retrieval2010

    • Author(s)
      Kazuhiro Seki, Huawei Qin, Kuniaki Uehara
    • Journal Title

      Proceedings of the 10th ACM/IEEE-CS Joint Conference on Digital Libraries

      Pages: 357-360

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Unsupervised Learning of Stroke Tagger for Online Kanji Handwriting Recognition2010

    • Author(s)
      Mathieu Blondel, Kazuhiro Seki, Kuniaki Uehara
    • Journal Title

      Proceedings of the 20th International Conference on Pattern Recognition

      Pages: 1973-1976

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] リンク構造とコンテンツを複合的に用いた極少訓練事例によるスプログ検出2010

    • Author(s)
      吉川幹人, 佐藤翔平, 関和広, 上原邦昭
    • Journal Title

      情報処理学会論文誌:データベース 3

      Pages: 29-37

    • NAID

      110007990071

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Hypothesis Generation and Ranking Based on Event Similarities2010

    • Author(s)
      Taiki Miyanishi, Kazuhiro Seki, Kuniaki Uehara
    • Journal Title

      Proceedings of the 25th Annual ACM Symposium On Applied Computing

      Pages: 1552-1558

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 主観的トリガー言語モデルによる意見情報検索2009

    • Author(s)
      関和広, 上原邦昭
    • Journal Title

      情報処理学会論文誌:数理モデル化と応用 Vol.2, No.3

      Pages: 27-38

    • NAID

      110007126884

    • Related Report
      2010 Final Research Report
  • [Journal Article] Gene Functional Annotation with Dynamic Hierarchical Classification Guided by Orthologs.2009

    • Author(s)
      Kazuhiro Seki, Yoshihiro Kino, Kuniaki Uehara.
    • Journal Title

      In Proceedings of the 12th International Conference on Discovery Science (DS 2009)

      Pages: 425-432

    • Related Report
      2010 Final Research Report
  • [Journal Article] Discovering Implicit Associations among Critical Biological Entities2009

    • Author(s)
      Kazuhiro Seki, Javed Mostafa
    • Journal Title

      International Journal of Data Mining and Bioinfo rmatics 3

      Pages: 105-123

    • NAID

      120001681716

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Gene Functional Annotation with Dynamic Hierarchical Classification Guided by Orthologs2009

    • Author(s)
      Kazuhiro Seki, Yoshihiro Kino, Kuniaki Uehara
    • Journal Title

      Proceedings of the 12th International Conference on Discovery Science

      Pages: 425-432

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Hypothesis Ranking Based on Semantic Event Similarities.

    • Author(s)
      Taiki Miyanishi, Kazuhiro Seki, Kuniaki Uehara.
    • Journal Title

      IPSJ Transactions on Bioinformatics. To appear

    • NAID

      130000657858

    • Related Report
      2010 Final Research Report
  • [Journal Article] Opinionated Document Retrieval Using Subjective Triggers

    • Author(s)
      Kazuhiro Seki, Kuniaki Uehara
    • Journal Title

      Journal of the American Society for Information Science and Technology

      Volume: (掲載確定)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Hypothesis Ranking Based on Semantic Event Similarities

    • Author(s)
      Taiki Miyanishi, Kazuhiro Seki, Kuniaki Uehara
    • Journal Title

      IPSJ Transactions on Bioinformatics

      Volume: (掲載確定)

    • NAID

      130000657858

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] 救急医療トリアージノートを用いた症候群サーベイランス2011

    • Author(s)
      中菅章浩, 関和広, 上原邦昭
    • Organizer
      言語処理学会第17回年次大会
    • Place of Presentation
      豊橋技術科学大学(愛知県)
    • Year and Date
      2011-03-09
    • Related Report
      2010 Annual Research Report
  • [Presentation] ネットワーク構造解析に基づく有望ノードの予測2011

    • Author(s)
      宮西大樹, 関和広, 上原邦昭
    • Organizer
      情報処理学会数理モデル化と問題解決研究会
    • Place of Presentation
      青島パームビーチホテル(宮崎県)
    • Year and Date
      2011-03-07
    • Related Report
      2010 Annual Research Report
  • [Presentation] 文献情報を用いたカーネル法による遺伝子機能アノテーション2011

    • Author(s)
      Mathieu Blondel, 関和広, 上原邦昭
    • Organizer
      情報処理学会数理モデル化と問題解決研究会
    • Place of Presentation
      青島パームビーチホテル(宮崎県)
    • Year and Date
      2011-03-07
    • Related Report
      2010 Annual Research Report
  • [Presentation] 生物医学文献検索におけるソーシャルタグと統制語彙との比較2011

    • Author(s)
      秦華偉, 関和広, 上原邦昭
    • Organizer
      電子情報通信学会言語理解とコミュニケーション研究会
    • Place of Presentation
      金沢大学(石川県)
    • Year and Date
      2011-01-28
    • Related Report
      2010 Annual Research Report
  • [Presentation] 療トリアージノートを用いた症候群サーベイランス2011

    • Author(s)
      中菅章浩,関和広
    • Organizer
      言語処理学会第17回年次大会発表論文集
    • Related Report
      2010 Final Research Report
  • [Presentation] ネトワーク構造解析に基づく有望ノードの予測2011

    • Author(s)
      宮西大樹, 関和広, 上原邦昭
    • Organizer
      情報処理学会研究報告2011-MPS-82
    • Related Report
      2010 Final Research Report
  • [Presentation] 文献情報を用いたカーネル法による遺伝子機能アノテーション2011

    • Author(s)
      Mathieu Blondel, 関和広, 上原邦昭
    • Organizer
      情報処理学会研究報告2011-MPS-82
    • Related Report
      2010 Final Research Report
  • [Presentation] 生物医学文献検索におけるソーシャルタグと統制語彙との比較.電子情報通信学会技術研究報告2011

    • Author(s)
      秦華偉, 関和広, 上原邦昭
    • Organizer
      言語理解とコミュニケーション研究会
    • Related Report
      2010 Final Research Report
  • [Presentation] 発想を支援するユーザエージェント2010

    • Author(s)
      萩村卓也, 関和広, 上原邦昭
    • Organizer
      電子情報通信学会ライフインテリジェンスとオフィス情報システム研究会
    • Place of Presentation
      早稲田大学(東京都)
    • Year and Date
      2010-05-21
    • Related Report
      2010 Annual Research Report
  • [Presentation] 実空間検索メタデータとしてのソーシャルメディア2010

    • Author(s)
      関和広, 上原邦昭
    • Organizer
      電子情報通信学会ライフインテリジェンスとオフィス情報システム研究会
    • Place of Presentation
      早稲田大学(東京都)
    • Year and Date
      2010-05-20
    • Related Report
      2010 Annual Research Report
  • [Presentation] 実空間検タとしてのソーシャルメディア.電子情報通信学会技術研究報告2010

    • Author(s)
      関和広, 上原邦昭
    • Organizer
      ライフインテリジェンスとオフィス情報システム研究会(1-6)
    • Related Report
      2010 Final Research Report
  • [Presentation] 発援するユーザエージェント.電子情報通信学会技術研究報告2010

    • Author(s)
      萩村卓也, 関和広, 上原邦昭
    • Organizer
      ライフインテリジェンスとオフィス情報システム研究会(99-103)
    • Related Report
      2010 Final Research Report
  • [Presentation] イベント類似度にもとづく仮説の順位付け2009

    • Author(s)
      宮西大樹、関和広、上原邦昭
    • Organizer
      情報処理学会関西支部
    • Place of Presentation
      神戸大学(兵庫県)
    • Year and Date
      2009-09-29
    • Related Report
      2009 Annual Research Report
  • [Presentation] Splog Detection Exploiting Link Structure and Contents Based on Few Labeled Examples2009

    • Author(s)
      Shohei Sato, Mikito Yoshikawa, Kazuhiro Seki, Kuniaki Uehara
    • Organizer
      Workshop on Search in Social Media
    • Place of Presentation
      Northeastern University(米国)
    • Year and Date
      2009-07-23
    • Related Report
      2009 Annual Research Report
  • [Presentation] Splog Detection Exploiting Link Structure and Contents Based on Few Labeled Examples.2009

    • Author(s)
      Shohei Sato, Mikito Yoshikawa, Kazuhiro Seki, Kuniaki Uehara.
    • Organizer
      Workshop on Search in Social Media (SSM 2009), co-located with ACM SIGIR 2009
    • Related Report
      2010 Final Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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