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Effects of DNA-protein crosslink lesions on DNA replication and transcription

Research Project

Project/Area Number 21710059
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Risk sciences of radiation/Chemicals
Research InstitutionHiroshima University

Principal Investigator

NAKANO Toshiaki  Hiroshima University, 大学院・理学研究科, 助教 (10526122)

Project Period (FY) 2009 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2010: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2009: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
Keywords修復 / 複製 / 転写 / DNA-タンパク質クロスリンク / DNA-タンパク質クロスリンク損傷 / DNA複製 / DnaB
Research Abstract

DNA-protein crosslinks (DPCs) are extremely bulky genomic lesions and are not efficiently repaired by nucleotide excision repair, suggesting that DPCs will exert detrimental effects on DNA replication and transcription in cells. In this study, we have prepared model DNA substrates containing site-specific DPCs and assessed their effects on DNA replication and transcription in vitro. DPCs on the lagging strand inhibited the progression of DnaB, the replicative helicase of E. coif, in a DPC size-dependent manner. Conversely DPCs on the leading strand had no effects on the progression of DnaB. We also have prepared DNA templates containing DPCs for in vitro transcriptions studies with T7 RNA polymerase. We are currently assessing the effects of DPCs in transcribed and nontranscribed strands on transcription.

Report

(3 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • Research Products

    (14 results)

All 2011 2010 2009 Other

All Journal Article (7 results) (of which Peer Reviewed: 3 results) Presentation (6 results) Remarks (1 results)

  • [Journal Article] Repair and biochemical effects of DNA-protein crosslinks2011

    • Author(s)
      Ide H., Shoulkamy M.I., Nakano T., Miyamoto-Matsubara M, Salem A.
    • Journal Title

      Mutat.Res. in press

    • Related Report
      2010 Final Research Report
  • [Journal Article] Repair and biochemical effects of DNA-protein crosslinks2011

    • Author(s)
      Toshiaki Nakano, et al.
    • Journal Title

      Mutation Research

      Volume: (in press)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genetics analysis of repair and damage tolerance mechanisms for DNA-protein crosslinks in Escherichia coli.2009

    • Author(s)
      Amir M.H., Nakano, T., Matoba N., Tuboi, T., Terato H., Yamamoto.K., Yamada.M, Nohmi.T., Ide H.
    • Journal Title

      Journal of Bacteriology 191(18)

      Pages: 5657-5668

    • Related Report
      2010 Final Research Report
  • [Journal Article] Homologous recombination but not nucleotide excision repair plays a pivotal role in tolerance to DNA-protein crosslinks in mammalian cells.2009

    • Author(s)
      Nakano, T., Katafuchi A., Matubara M., Terato H., Tuboi.T., Pack S.P., Makino K., Tauchi H, Ide H.
    • Journal Title

      J.Biol.Chem. 284(40)

      Pages: 27065-27076

    • Related Report
      2010 Final Research Report
  • [Journal Article] Homologous recombination but not nucleotide excision repairplays a pivotal role in tolerance to DNA-protein crosslinks in mammalian cells2009

    • Author(s)
      Nakano, T., et al.
    • Journal Title

      Journal of Biological Chemistry 284(40)

      Pages: 27065-27076

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genetics analysis of repair and damage tolerance mechanisms for DNA-protein crosslinks in Escherichia coli2009

    • Author(s)
      Salem A. Nakano, T., et al
    • Journal Title

      Journal of Bacteriology 191(18)

      Pages: 5657-5668

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Comparison of the activities of bacterial and mammalian nucleotide excision repaor for DNA-protein crosslinks2009

    • Author(s)
      Nakano, T., et.al
    • Journal Title

      Nucleic Acids Symposium. Series 53

      Pages: 225-226

    • Related Report
      2009 Annual Research Report
  • [Presentation] 試験管内反応を用いたDNA-タンパク質クロスリンク損傷の転写反応阻害の検討2010

    • Author(s)
      中野敏彰, その他(3名)
    • Organizer
      第33回日本分子生物学会年会
    • Place of Presentation
      神戸市
    • Year and Date
      2010-12-08
    • Related Report
      2010 Annual Research Report 2010 Final Research Report
  • [Presentation] DNA-タンパク質クロスリンク損傷の修復機構2010

    • Author(s)
      中野敏彰
    • Organizer
      日本放射線影響学会第53回大会
    • Place of Presentation
      京都市
    • Year and Date
      2010-10-21
    • Related Report
      2010 Annual Research Report
  • [Presentation] Assesment of the activity of mammalian nucleotide excision repair for superbulky DNA lesions2010

    • Author(s)
      Toshiaki Nakano, et al.
    • Organizer
      11th International Workshop on Radiation Damage to DNA
    • Place of Presentation
      Atlanta (USA)
    • Year and Date
      2010-05-18
    • Related Report
      2010 Annual Research Report
  • [Presentation] Assesment of the activity of mammalian nucleotie excision repair for superbulky DNA lesions, 11th International Workshop on Radiation2010

    • Author(s)
      Toshiaki Nakano, et al.(3名)
    • Organizer
      Damage to DNA
    • Place of Presentation
      Atlanta, USA
    • Year and Date
      2010-05-15
    • Related Report
      2010 Final Research Report
  • [Presentation] Activities of bacterial and human nucleotide excision repair systems for DNA-protein crosslink damage2009

    • Author(s)
      Toshiaki Nakano, et al.(3名)
    • Organizer
      ASM Conference on DNA Repair and Mutagenesis: From Molecular Structure to Human Disease
    • Place of Presentation
      Whistler, Canada
    • Year and Date
      2009-06-02
    • Related Report
      2010 Final Research Report
  • [Presentation] Activities of bacterial and human nucleotide excision repair systems for DNA-protein crosslink damage2009

    • Author(s)
      Nakano, T., et al
    • Organizer
      ASM Conference on DNA Repair and Mutagenesis : From Molecular Structure to Human Disease
    • Place of Presentation
      カナダ(ウィスラー)
    • Year and Date
      2009-06-01
    • Related Report
      2009 Annual Research Report
  • [Remarks] 遺伝子化学研究室ホームページ

    • URL

      http://home.hiroshima-u.ac.jp/genechem/index.html

    • Related Report
      2010 Final Research Report

URL: 

Published: 2009-04-01   Modified: 2016-04-21  

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