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Identification of the genetic factor against influenza virus infection in the chicken MHC region.

Research Project

Project/Area Number 21710204
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Applied genomics
Research InstitutionNational Institute of Genetics (2010)
Tokai University (2009)

Principal Investigator

HOSOMICHI Kazuyoshi  National Institute of Genetics, 総合遺伝研究系, 助教 (50420948)

Project Period (FY) 2009 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2010: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2009: ¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Keywordsニワトリ / MHC / ゲノム / 多様性 / SNP / トリインフルエンザ
Research Abstract

The chicken MHC (MHC-B) is one of the research interests because of the strong associations with avian influenza virus infection identified in particular MHC-B haplotypes. Because sequence data of MHC-B haplotypes have been lacking, efforts to systematically resolve which genes within the MHC-B region contribute to well-defined MHC-B-associated disease responses was hampering. To indetify the genetic factor against influenza virus infection in the MHC-B region, we determined the complete genomic sequence of 2 MHC-B haplotypes across a region of 220kb encompassing 34 gene loci ranging from KIFC1 to C4.

Report

(3 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • Research Products

    (54 results)

All 2011 2010 2009 Other

All Journal Article (26 results) (of which Peer Reviewed: 22 results) Presentation (27 results) Remarks (1 results)

  • [Journal Article] Exact break point of a 50 kb deletion 8 kb centromeric of the HLA-A locus with HLA-A*24:02: the same deletion observed in other A*24 alleles and A*23:01 allele.2011

    • Author(s)
      Mitsunaga S, Okudaira Y, Kunii N, Cui T, Hosomichi K, Oka A, Suzuki Y, Homma Y, Sato S, Inoue I, Inoko H.
    • Journal Title

      Immunogenetics. In press.

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Comparative genome analysis of the major histocompatibility complex (MHC) class I B/C segments in primates elucidated by genomic sequencing in common marmoset(Callithrix jacchus).2011

    • Author(s)
      Shiina T, Kono A, Westphal N, Suzuki S, Hosomichi K, Kita YF, Roos C, Inoko H, Walter L.
    • Journal Title

      Immunogenetics. In press

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Exome Resequencing Combined with Linkage Analysis Identifies Novel PTH1R Variants in Primary Failure of Tooth Eruption in Japanese.2011

    • Author(s)
      Yamaguchi T, Hosomich K, Narita A, Shirota T, Tomoyasu Y, Maki K, Inoue I.
    • Journal Title

      J Bone Miner Res. In press

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Primordial Linkage of b2-Microglobulin to the MHC.2011

    • Author(s)
      Ohta Y, Shiina T, Lohr RL, Hosomichi K, Pollin TI, Heist EJ, Suzuki S, Inoko H, Flajnik MF.
    • Journal Title

      J Immunol. 186(6)

      Pages: 3563-3571

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] 全エクソンシーケンスによる希少疾患の原因遺伝子同定2011

    • Author(s)
      細道一善、井ノ上逸朗
    • Journal Title

      医学のあゆみ 236(6)

      Pages: 565-570

    • Related Report
      2010 Final Research Report
  • [Journal Article] Comparative genome analysis of the major histocompatibility complex (MHC) class I B/C segments in primates elucidated by genomic sequencing in common marmoset (Callithrix jacchus).2011

    • Author(s)
      Shiina T, et al.
    • Journal Title

      Immunogenetics.

      Volume: (In press)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Exact break point of a 50 kb deletion 8 kb centromeric of the HLA-A locus with HLA-A^*24:02 : the same deletion observed in other A^*24 alleles and A^*23:01 allele.2011

    • Author(s)
      Mitsunaga S, et al.
    • Journal Title

      Immunogenetics.

      Volume: (In press)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Exome Resequencing Combined with Linkage Analysis Identifies Novel PTH1R Variants in Primary Failure of Tooth Eruption in Japanese.2011

    • Author(s)
      Hosomich K, et al.
    • Journal Title

      J Bone Miner Res.

      Volume: (In press)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Primordial Linkage of β2-Microglobulin to the MHC.2011

    • Author(s)
      Ohta Y, et al.
    • Journal Title

      J Immunol.

      Volume: 186 Pages: 3563-3571

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 全エクソンシーケンスによる希少疾患の原因遺伝子同定2011

    • Author(s)
      細道一善
    • Journal Title

      医学のあゆみ

      Volume: 236 Pages: 565-570

    • Related Report
      2010 Annual Research Report
  • [Journal Article] TRIM39 and RNF39 are associated with Behcet's disease independently of HLA-B*51 and.A*26.2010

    • Author(s)
      Kurata R, Nakaoka H, Tajima A, Hosomichi K, Shiina T, Meguro A, Mizuki N, Ohono S, Inoue I, Inoko H.
    • Journal Title

      Biochem Biophys Res Commun. 401(4)

      Pages: 533-537

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Basic characterization of 90 kDa heat shock protein genes HSP90AA1, HSP90AB1, HSP90B1 and TRAP1 expressed in Japanese quail (Coturnix japonica).2010

    • Author(s)
      Nagahori K, Iwamoto S, Maruyama A, Suzuki S, Hosomichi K, Shiina T, Hara H, Yoshida Y, Hanzawa K.
    • Journal Title

      Anim Sci J. 81(4)

      Pages: 513-518

    • NAID

      10027889472

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Positional effects of polymorphisms in probe-target sequences on genoplot images of oligonucleotide microarrays.2010

    • Author(s)
      Cui TL, Nakaoka H, Akiyama K, Kamura H, Hosomichi K, Bae J, Cheong H, Shin H, Yada T, Inoue I.
    • Journal Title

      Genet Mol Res. 9(1)

      Pages: 524-531

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] 次世代シークエンサーによるHLA領域のターゲットリシークエンス2010

    • Author(s)
      細道一善、椎名隆、井ノ上逸朗、猪子英俊
    • Journal Title

      医学のあゆみ 233(13)

      Pages: 1187-1191

    • Related Report
      2010 Final Research Report
  • [Journal Article] TRIM39 and RNF39 are associated with Behcet's disease independently of HLA-B^*51 and -A^*26.2010

    • Author(s)
      Kurata R, et al.
    • Journal Title

      Biochem Biophys Res Commun.

      Volume: 401 Pages: 533-537

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Basic characterization of 90 kDa heat shock protein genes HSP90AA1, HSP90AB1, HSP90B1 and TRAP1 expressed in Japanese quail (Coturnix japonica).2010

    • Author(s)
      Nagahori K, et al.
    • Journal Title

      Anim Sci J.

      Volume: 81 Pages: 513-518

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Positional effects of polymorphisms in probe-target sequences on genoplot images of oligonucleotide microarrays.2010

    • Author(s)
      Cui TL, et al.
    • Journal Title

      Genet Mol Res.

      Volume: 9 Pages: 524-531

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 次世代シークエンサーによるHLA領域のターゲットリシークエンス2010

    • Author(s)
      細道一善
    • Journal Title

      医学のあゆみ

      Volume: 233 Pages: 1187-1191

    • Related Report
      2010 Annual Research Report
  • [Journal Article] Positional effects of polymorphisms in probe-target sequences on genoplot images of oligonucleotide microarrays2010

    • Author(s)
      Cui TL, Nakaoka H, Akiyama K, Kamura H, Hosomichi K, Bae J, Cheong H, Shin H, Yada T, Inoue I
    • Journal Title

      Genet.Mol.Res. 9

      Pages: 524-531

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] BG1 has a major role in MHC-linked resistance to malignant lymphoma in the chicken.2009

    • Author(s)
      Goto RM, Wang Y, Taylor RL Jr, Wakenell PS, Hosomichi K, Shiina T, Blackmore CS, Briles WE, Miller MM.
    • Journal Title

      Proc Natl Acad Sci USA. 106

      Pages: 16740-16745

    • Related Report
      2010 Final Research Report 2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] MHC class I A loci polymorphism and diversity in three Southeast Asian populations of cynomolgus macaque.2009

    • Author(s)
      Kita YF, Hosomichi K, Kohara S, Itoh Y, Ogasawara K, Tsuchiya H, Torii R, Inoko H, Blancher A, Kulski JK, Shiina T.
    • Journal Title

      Immunogenetics. 61(9)

      Pages: 635-648

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] HLA-A allele associations with viral MER9-LTR nucleotide sequences at two distinct loci within the MHC alpha block.2009

    • Author(s)
      Kulski JK, Shigenari A, Shiina T, Hosomichi K, Yawata M, Inoko H.
    • Journal Title

      Immunogenetics. 61(4)

      Pages: 257-270

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] The HLA genomic loci map : expression, interaction, diversity and disease.2009

    • Author(s)
      Shiina T, Hosomichi K, Inoko H, Kulski JK.
    • Journal Title

      J Hum Genet. 54

      Pages: 15-39

    • NAID

      10030728683

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] MHC class I A loci polymorphism and diversity in three Southeast Asian populations of cynomolgus macaque.2009

    • Author(s)
      Kita YF, Hosomichi K, Kohara S, Itoh Y, Ogasawara K, Tsuchiya H, Torii R, Inoko H, Blancher A, Kulski .TK, Shiina T.
    • Journal Title

      Immunogenetics. 61

      Pages: 635-648

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] HLA-A allele associations with viral MER9-LTR nucleotide sequences at two distinct loci within the MHC alpha block.2009

    • Author(s)
      Kulski JK, Shigenari A, Shiina T, Hosomichi K, Yawata M, Inoko H.
    • Journal Title

      Immunogenetics. 61

      Pages: 257-270

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Nutritional and hormonal regulation of uncoupling protein 2.2009

    • Author(s)
      Yonezawa T, Kurata R, Hosomichi K, Kono A, Kimura M, Inoko H.
    • Journal Title

      IUBMB Life. 61

      Pages: 1123-1231

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] Genome sequencing of the major histocompatibility complex regions : comparative genomics from shark to man and re-sequencing of the entire HLA region.2011

    • Author(s)
      Hosomichi K, Shiina T
    • Organizer
      Beckman Research Institute Seminar Series
    • Place of Presentation
      City of Hope Medical Center, Los Angeles, California
    • Year and Date
      2011-01-18
    • Related Report
      2010 Final Research Report
  • [Presentation] Genome sequencing of the major histocompatibility complex regions : comparative genomics from shark to man and re-sequencing of the entire HLA region.2011

    • Author(s)
      Hosomichi K
    • Organizer
      Beckman Research Institute Seminar Series
    • Place of Presentation
      City of Hope Medical Center (Los Angeles, California)
    • Year and Date
      2011-01-18
    • Related Report
      2010 Annual Research Report
  • [Presentation] Application of targeted resequencing methods to the MHC regions on chicken chromosome 16 (GGA16).2011

    • Author(s)
      Hosomichi K, Miller MM, Goto RM, Suzuki S, Inoko H, Inoue I, Shiina T
    • Organizer
      Plant & Animal Genome XIX Conference
    • Place of Presentation
      Town & Country Convention Center, San Diego, California
    • Related Report
      2010 Final Research Report
  • [Presentation] Application of targeted resequencing methods to the MHC regions on chicken chromosome 16 (GGA16).2011

    • Author(s)
      Hosomichi K
    • Organizer
      Plant & Animal Genome XIX Conference
    • Place of Presentation
      Town & Country Convention Center (San Diego, California)
    • Related Report
      2010 Annual Research Report
  • [Presentation] ニホンウズラTRIM領域の塩基配列の決定2010

    • Author(s)
      鈴木進悟、細道一善、椎名隆、原ひろみ、吉田豊、半澤恵
    • Organizer
      日本畜産学会第112回大会
    • Place of Presentation
      明治大学リバティタワー(東京)
    • Year and Date
      2010-03-29
    • Related Report
      2009 Annual Research Report
  • [Presentation] Re-sequencing of the entire HLA region for informative polymorphism detection and haplotype map construction2010

    • Author(s)
      Hosomichi K, Shiina T, Wang T, Suzuki S, Inoko H, InoueI
    • Organizer
      60th Annual Meeting of The American Society of Human Genetics (ASHG)
    • Place of Presentation
      Washington, DC
    • Related Report
      2010 Annual Research Report 2010 Final Research Report
  • [Presentation] 医学・医療への応用を目的としたHLA領域のリシークエンシング2010

    • Author(s)
      細道一善、椎名隆、王〓、鈴木進悟、田平知子、林健志、猪子英俊、井ノ上逸朗
    • Organizer
      日本人類遺伝学会第55回大会
    • Place of Presentation
      大宮ソニックシティーホール
    • Related Report
      2010 Annual Research Report 2010 Final Research Report
  • [Presentation] 疾患ゲノム解明に向けた全エクソンおよびHLA領域ターゲットリシーケンス2010

    • Author(s)
      細道一善、成田暁、椎名隆、猪子英俊、井ノ上逸朗
    • Organizer
      日本人類遺伝学会第55回大会シンポジウム
    • Place of Presentation
      大宮ソニックシティーホール
    • Related Report
      2010 Final Research Report
  • [Presentation] 次世代シークエンサーによるHLAハプロタイプのリシークエンス2010

    • Author(s)
      細道一善、椎名隆、井ノ上逸朗、猪子英俊
    • Organizer
      第19回日本組織適合性学会大会シンポジウム
    • Place of Presentation
      東京大学本郷キャンパス
    • Related Report
      2010 Final Research Report
  • [Presentation] Re-sequencing of the human MHC region toward to biomedical application for various animal genomes2010

    • Author(s)
      Hosomichi K, Shiina T, Wang T, Suzuki S, Inoko H, InoueI
    • Organizer
      9th IVIS International Veterinary Immunology Symposium
    • Place of Presentation
      Tower Holl Funabori, Edogawa-ku, Tokyo
    • Related Report
      2010 Final Research Report
  • [Presentation] Resequencing of the entire major histocompatibility complex regions to identify haplotype structure2010

    • Author(s)
      Hosomichi K, Shiina T, Wang T, Suzuki S, Inoko H, InoueI
    • Organizer
      日本進化学会2010年大会国際ワークショップ
    • Place of Presentation
      東京工業大学 大岡山キャンパス
    • Related Report
      2010 Final Research Report
  • [Presentation] Re-sequencing of the human MHC region toward to biomedical application for various animal genomes2010

    • Author(s)
      Hosomichi K
    • Organizer
      9th IVIS International Veterinary Immunelogy Symposium
    • Place of Presentation
      Tower Holl Funabori (Edogawa-ku, Tokyo)
    • Related Report
      2010 Annual Research Report
  • [Presentation] 疾患ゲノム解明に向けた全エクソンおよびHLA領域ターゲットリシーケンス2010

    • Author(s)
      細道一善
    • Organizer
      日本人類遺伝学会第55回大会 シンポジウム
    • Place of Presentation
      大宮ソニックシティーホール
    • Related Report
      2010 Annual Research Report
  • [Presentation] 次世代シークエンサーによるHLAハプロタイプのリシークエンス2010

    • Author(s)
      細道一善
    • Organizer
      第19回 日本組織適合性学会大会 シンポジウム
    • Place of Presentation
      東京大学 本郷キャンパス
    • Related Report
      2010 Annual Research Report
  • [Presentation] Resequencing of the entire major histocompatibility complex regions to identify haplotype structure2010

    • Author(s)
      細道一善
    • Organizer
      日本進化学会 2010年大会 国際ワークショップ
    • Place of Presentation
      東京工業大学 大岡山キャンパス
    • Related Report
      2010 Annual Research Report
  • [Presentation] Haplotype analysis that added new genetic polymorphic marker of the Japanese Quail Mhc region2009

    • Author(s)
      Suzuki S, Hosomichi K, Shiina T, Mizutani M, Fujiwara A, Watari K, Hara H, Yoshida Y, Hanzawa K
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川)
    • Year and Date
      2009-12-12
    • Related Report
      2009 Annual Research Report
  • [Presentation] Development of personal genome analysis method on the entire HLA region2009

    • Author(s)
      Hosomichi K, Shiina T, Wang T, Kawata H, Inoko H, Inoue I
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜
    • Year and Date
      2009-12-09
    • Related Report
      2010 Final Research Report
  • [Presentation] Development of personal genome analysis method on the entire HLA region2009

    • Author(s)
      Hosomichi K, Shiina T, Wang T, Kawata H, Indko H, Inoue I
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      パシフィコ横浜(神奈川)
    • Year and Date
      2009-12-09
    • Related Report
      2009 Annual Research Report
  • [Presentation] HLA領域のパーソナルゲノム解析法の開発と疾患関連解析への応用2009

    • Author(s)
      細道一善
    • Organizer
      第4回バイオインフォマティクス研究者と医学研究者の交流会
    • Place of Presentation
      東京大学柏キャンパス
    • Year and Date
      2009-11-20
    • Related Report
      2010 Final Research Report
  • [Presentation] HLA領域のパーソナルゲノム解析法の開発と疾患関連解析への応用2009

    • Author(s)
      細道一善
    • Organizer
      第4回バイオインフォマティクス研究者と医学研究者の交流会
    • Place of Presentation
      東京大学柏キャンパス(千葉)
    • Year and Date
      2009-11-20
    • Related Report
      2009 Annual Research Report
  • [Presentation] SNP association study of Behcet' s disease to unravel the genetic susceptibility and pathoetiology.2009

    • Author(s)
      Kurata R, Nakaoka H, Tajima A, Saito T, Hosomichi K, Shiina T, Meguro A, Mizuki N, Inoko H, Inoue I
    • Organizer
      The American Society of Human Genetics 59th Annual Meeting
    • Place of Presentation
      Hawaii Convention Center, Honolulu, Hawaii
    • Year and Date
      2009-10-22
    • Related Report
      2009 Annual Research Report
  • [Presentation] ニホンウズラMHCクラス1領域に座位するTAPI遺伝子の多様性解析2009

    • Author(s)
      池田正規、朝治桜子、鈴木進悟、細道一善、椎名隆、原ひろみ、吉田豊、半澤恵
    • Organizer
      日本畜産学会第111回大会
    • Place of Presentation
      琉球大学千原キャンパス(沖縄)
    • Year and Date
      2009-09-28
    • Related Report
      2009 Annual Research Report
  • [Presentation] HLA領域のパーソナルゲノム解析法の開発2009

    • Author(s)
      細道一善、猪子英俊、河田寿子、井ノ上逸朗、椎名隆
    • Organizer
      第18回日本組織適合性学会大会
    • Place of Presentation
      名古屋国際会議場
    • Year and Date
      2009-09-26
    • Related Report
      2010 Final Research Report
  • [Presentation] HLA領域のパーソナルゲノム解析法の開発2009

    • Author(s)
      細道一善、猪子英俊、河田寿子、井ノ上逸朗、椎名隆
    • Organizer
      第18回日本組織適合性学会大会
    • Place of Presentation
      名古屋国際会議場(愛知)
    • Year and Date
      2009-09-26
    • Related Report
      2009 Annual Research Report
  • [Presentation] HLA領域のパーソナルゲノム解析法の開発2009

    • Author(s)
      細道一善、椎名隆、王、河田寿子、猪子英俊、井ノ上逸朗
    • Organizer
      日本人類遺伝学会第54回大会
    • Place of Presentation
      グランドプリンスホテル高輪
    • Year and Date
      2009-09-25
    • Related Report
      2010 Final Research Report
  • [Presentation] HLA領域のパーソナルゲノム解析法の開発2009

    • Author(s)
      細道一善、椎名隆、王〓、河田寿子、猪子英俊、井ノ上逸朗
    • Organizer
      日本人類遺伝学会第54回大会
    • Place of Presentation
      グランドプリンスホテル高輪(東京)
    • Year and Date
      2009-09-25
    • Related Report
      2009 Annual Research Report
  • [Presentation] ベーチェット病感受性領域のSNP関連解析から病態解明2009

    • Author(s)
      倉田里穂、中岡博史、田嶋敦、斉藤卓磨、細道一善、椎名隆、目黒明、水木信久、井ノ上逸朗、猪子英俊
    • Organizer
      日本人類遺伝学会第54回大会
    • Place of Presentation
      グランドプリンスホテル高輪(東京)
    • Year and Date
      2009-09-24
    • Related Report
      2009 Annual Research Report
  • [Remarks] ホームページ等

    • URL

      http://www.nig.ac.jp/section/inoue/inoue-j.html

    • Related Report
      2010 Final Research Report

URL: 

Published: 2009-04-01   Modified: 2016-04-21  

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