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Analysis for functional diversity of environmental genomes

Research Project

Project/Area Number 21710212
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field ゲノム情報科学
Research InstitutionRitsumeikan University

Principal Investigator

OKUDA Shujiro  Ritsumeikan University, 生命科学部, 助教 (00512310)

Project Period (FY) 2009 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2010: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2009: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Keywordsメタゲノム / 環境
Research Abstract

This project aims to clarify the relationship between environments and microbes using environmental genomic data from metagenomics analyses. I compared various environmental metagenomics data and found that the metabolic categories of them have no large differences but sub-networks of metabolism were linked each other in environmental microbes. Therefore, it was implied that microbes have interactions through compounds in their environments.

Report

(3 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • Research Products

    (5 results)

All 2011 2010 2009 Other

All Journal Article (2 results) (of which Peer Reviewed: 2 results) Presentation (2 results) Remarks (1 results)

  • [Journal Article] ODB : a database for operon organizations, 2011 update.2011

    • Author(s)
      Shujiro Okuda, Akiyasu C.Yoshizawa
    • Journal Title

      39

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] ODB : a database for operon organizations, 2011 update2011

    • Author(s)
      Shujiro Okuda, Akiyasu C.Yoshizawa
    • Journal Title

      Nucleic Acids Research

      Volume: 39

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] 環境ゲノムのパスウェイ解析2010

    • Author(s)
      奥田修二郎
    • Organizer
      日本微生物生態学会
    • Place of Presentation
      広島大学(広島県)
    • Year and Date
      2010-11-21
    • Related Report
      2010 Final Research Report
  • [Presentation] 環境ゲノムのパスウェイ解析2009

    • Author(s)
      奥田修二郎
    • Organizer
      日本微生物生態学会(第25回大会)
    • Place of Presentation
      広島大学(広島県)
    • Year and Date
      2009-11-21
    • Related Report
      2009 Annual Research Report
  • [Remarks] ホームページ等

    • Related Report
      2010 Final Research Report

URL: 

Published: 2009-04-01   Modified: 2016-04-21  

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