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The analysis of protein dynamics by using NMR with induced laser

Research Project

Project/Area Number 21740230
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Condensed matter physics I
Research InstitutionOsaka University

Principal Investigator

HAMADA Norio  大阪大学, 産学連携本部, 特任講師 (80379148)

Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2011: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2010: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2009: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywords光物性 / NMR / レーザー / 分光 / 構造変化
Research Abstract

We developed NMR system installed laser light at Osaka university. This NMR system was characterinzed the properties of molecules such as light-switching and light-active ones. In the research of Photoactive Yellow Protein(PYP, blue light photoreceptor protein) active-center model compounds, we reported that the intramolecular hydrogen bonds played an important role in its photoreaction and color regulation. In the investigations of light-switching molecules, we have assigned the signals related to light-induced conformational changes from obtained NMR data. Based on these results, we tried to apply the measurement of photoreceptor protein in order to research light-induced conformational changes. We also planned to install infrared laser lights into the NMR equipment in order to analyze the protein dynamics by inducing the perturbation of specified vibrational modes with IR laser. However, in this time, the light-induced conformational changes of photoreceptor protein were not able to be analyzed by this system and we couldn' t develop the proper IR laser and installation system. Now we have continued to measure photoreceptor proteins and analyzed data.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (10 results)

All 2012 2011 2009

All Journal Article (6 results) (of which Peer Reviewed: 6 results) Presentation (4 results)

  • [Journal Article] Emission Properties of Cyclodextrin Dimers Linked with Perylenediimide-Effect of Cyclodextrin Tumbling2012

    • Author(s)
      Y. Takashima, Y. Fukui, M. Otsubo, N. Hamada, H. Yamaguchi, H. Yamamoto, A. Harada
    • Journal Title

      Polymer Journal

      Volume: 44 Issue: 3 Pages: 278-285

    • DOI

      10.1038/pj.2011.128

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Selective Photoinduced Energy Transfer from a Thiophene Rotaxane to Acceptor2011

    • Author(s)
      K. Sakamoto, Y. Takashima, N. Hamada, H. Ichida, H. Yamaguchi, H. Yamamoto, A. Harada
    • Journal Title

      Organic Lettes

      Volume: 13(4) Issue: 4 Pages: 672-675

    • DOI

      10.1021/ol102912g

    • Related Report
      2011 Final Research Report 2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Investigation of the effect of the NH. C hydrogen bond from Cys69 to PYP chromophore using novel active-center model compound2009

    • Author(s)
      K. Okamoto, N. Hamada, T. Sumi, T. Okamura, K. Ueyama, H. Yamamoto
    • Journal Title

      Chemistry Letters

      Volume: Vol.38(5) Pages: 456-457

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Color regulation and stabilization of chromophore by Cys69 in photoactive yellow protein active center2009

    • Author(s)
      K. Okamoto, N. Hamada, T. Okam-ura, K. Ueyama, H. Yamamoto
    • Journal Title

      Organic Biomolecular Chemistry

      Volume: 7(18) Issue: 18 Pages: 3782-3791

    • DOI

      10.1039/b905835d

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Color regulation and stabilization of chromophore by Cys69 in photoactive yellow protein active center.2009

    • Author(s)
      K.Okamoto, N.Hamada, T.Okamura, K.Ueyama, H.Yamamoto
    • Journal Title

      Organic Biomolecular Chemistry 7(18)

      Pages: 3782-3791

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Investigation of the effect of the NH…OC hydrogen bond from Cys69 to PYP chromophore using novel active-center model compound2009

    • Author(s)
      K.Okamoto, N.Hamada, T. Sumi, T.Okamura, K.Ueyama, H.Yamamoto
    • Journal Title

      Chemistry Letters Vol.38(5)

      Pages: 456-457

    • NAID

      10025121887

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] 光受容蛋白質における光異性化構造ダイナミクスの研究2012

    • Author(s)
      中村亮介、濱田格雄、兼松泰男、阿部健太、吉澤雅幸
    • Organizer
      物理学会(第67回年次大会)
    • Place of Presentation
      関西学院大学
    • Year and Date
      2012-03-24
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] 飛石型共役系ポリマーの合成と光エネルギー変換システムへの応用(41)2011

    • Author(s)
      西邨翔太、青田浩幸、松本昭、兼松泰男、市田秀樹、濱田格雄
    • Organizer
      第60回高分子討論会
    • Place of Presentation
      岡山大学
    • Year and Date
      2011-09-30
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] Pump-Dump-蛍光スペクトルにおけるRed-edge dumping[ III]2009

    • Author(s)
      市田秀樹, 中村亮介, 濱田格雄, 兼松泰男
    • Organizer
      日本物理学会
    • Place of Presentation
      熊本大学
    • Year and Date
      2009-09-27
    • Related Report
      2011 Final Research Report
  • [Presentation] Pump-Dump-蛍光スペクトルにおけるRed-edge dumping[III]2009

    • Author(s)
      市田秀樹, 中村亮介, 濱田格雄, 兼松泰男
    • Organizer
      日本物理学会
    • Place of Presentation
      熊本大学
    • Year and Date
      2009-09-27
    • Related Report
      2009 Annual Research Report

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Published: 2009-04-01   Modified: 2020-05-15  

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