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Toward REVERSE PROTEOMICS : a selection platform of a peptide fragment that specifically inhibits the targeted protein-protein interaction.

Research Project

Project/Area Number 21760645
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Biofunction/Bioprocess
Research InstitutionUniversity of Shizuoka

Principal Investigator

KAWARASAKI Yasuaki  静岡県立大学, 食品栄養科学部, 准教授 (80303585)

Research Collaborator ITOU Keisuke  静岡県立大学, 食品栄養科学部, 助教 (40580460)
HOSONO Hideo  名古屋大学, 大学院・生命農学研究科, 教授 (00237348)
KOJIMA Takaaki  名古屋大学, 大学院・生命農学研究科, 助教 (40509080)
Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2011: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2010: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2009: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywordsバイオテクノロジー / プロテオーム / ゲノム / 蛋白質 / 酵素 / 蛋白質間相互作用 / 機能インタラクトーム解析 / 逆プロテオミクス解析 / 酵母2ハイブリッド系 / 定量的大規模スクリーニング / 進化分子工学 / 創薬探索技術 / 蛋白質生産 / 染色体分配
Research Abstract

An efficient methodology that facilitates selecting a polypeptide fragment that specifically inhibits the targeted protein-protein interaction has been established in this research. I have demonstrated an interaction domain, or a polypeptide responsible for the binding surface-formation, from either of the targeted proteins can be a competitive inhibitor against the interaction between the native proteins in vivo. A novel screening system with a quantitative reporter gene(an engineered fungal cDNA for secretory beta-galactosidase, LacA3) was also developed to facilitate a directed evolution of the inhibitor fragment.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (34 results)

All 2012 2011 2010 2009 Other

All Journal Article (9 results) (of which Peer Reviewed: 9 results) Presentation (24 results) Remarks (1 results)

  • [Journal Article] High cell-density expression system : A novel method for extracellular production of "difficult-to-express" proteins2012

    • Author(s)
      Kimata K., Yamaguchi M., Saito Y., Hata H., Miyake K., Yamane T., Nakagawa Y., Yano A., Ito K., and Kawarasaki Y
    • Journal Title

      J. Biosci. Bioeng

      Volume: 113 Issue: 2 Pages: 154-159

    • DOI

      10.1016/j.jbiosc.2011.10.007

    • NAID

      110009418661

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Emulsion culture : A miniaturized library screening system based on micro-droplets in an emulsified medium2011

    • Author(s)
      Kojima T, Nagao N, Ando D, Ojima T, Kawarasaki Y, Kobayashi I, Nakajima M, Nakano H
    • Journal Title

      J. Biosci. Bioeng

      Volume: 112 Issue: 3 Pages: 299-303

    • DOI

      10.1016/j.jbiosc.2011.05.017

    • NAID

      110008790458

    • Related Report
      2011 Annual Research Report 2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Crystal Structure of Glucansucrase from the Dental Caries Pathogen Streptococcus mutans2011

    • Author(s)
      Ito K, Ito S, Shimamura T(co-1st author), Weyand S, Kawarasaki Y, Misaka T, Abe K, Kobayashi T, Cameron AD, Iwata S.
    • Journal Title

      J. Mol. Biol.

      Volume: 408(2) Issue: 2 Pages: 177-86

    • DOI

      10.1016/j.jmb.2011.02.028

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Quantitative Y2H screening : Cloning and signal peptide engineering of a fungal secretory LacA gene and its application to yeast two-hybrid system as a quantitative reporter2010

    • Author(s)
      Kamiya T, Ojima T, Sugimoto K, Nakano H, Kawarasaki Y
    • Journal Title

      J. Biotechnol

      Volume: 146 Issue: 4 Pages: 151-159

    • DOI

      10.1016/j.jbiotec.2010.02.007

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] A method for reverse interactome analysis : High-resolution mapping of interdomain interaction network in Dam1 complex and its specific disorganization based on interaction domain expression2010

    • Author(s)
      Ikeuchi A., Kamiya T., Sugimoto K., Yamane T., Nakano H., and Kawarasaki Y
    • Journal Title

      Biotech. Progr

      Volume: 26 Issue: 4 Pages: 945-53

    • DOI

      10.1002/btpr.403

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] A method for reverse interactome analysis : High-resolution mapping of interdomain interaction network in Daml complex and its specific disorganization based on interaction domain expression2010

    • Author(s)
      Ikeuchi A., Kamiya T., Sugimoto K., Yamane T., Nakano H., Kawarasaki Y.
    • Journal Title

      Biotech.Progr

      Volume: 26 Pages: 945-953

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystallization and preliminary X-ray analysis of a glucansucrase from the dental caries pathogen Streptococcus mutans.2010

    • Author(s)
      Ito K., Ito S., Shimamura T., Kawarasaki Y., Abe K., Misaka T., Kobayashi T., Iwata S.
    • Journal Title

      Acta Cryst.

      Volume: F66 Pages: 1086-1088

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Quantitative Y2H screening : Cloning and signal peptide engineering of a fungal secretory LacA gene and its application to yeast two-hybrid system as a quantitative reporter.2010

    • Author(s)
      Kamiya T, Ojima T, Sugimoto K, Nakano H, ^*Kawarasaki Y.
    • Journal Title

      Journal of Biotechnology 146

      Pages: 151-159

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] High-resolution mapping of interdomain interaction network in Daml complex and its specific disorganization based on interaction domain expression.2010

    • Author(s)
      Ikeuchi A., Kamiya T., Sugimoto K., Yamane T., Nakano H., ^*Kawarasaki Y.
    • Journal Title

      Biotechnology Progress (in press)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] 酵母シグナルペプチドライブラリーを用いたシグナルペプチド最適化ツールの開発2012

    • Author(s)
      原翔一, ら
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都女子大学
    • Year and Date
      2012-03-24
    • Related Report
      2011 Annual Research Report
  • [Presentation] 組換え出芽酵母高密度懸濁液による難生産性ラッカーゼの効率的生産2012

    • Author(s)
      齋藤雄太, ら
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都女子大学
    • Year and Date
      2012-03-24
    • Related Report
      2011 Annual Research Report
  • [Presentation] Mad2高結合型ペプチドの動力学的解析2012

    • Author(s)
      杉本渓, ら
    • Organizer
      第13回静岡ライフサイエンスシンポジウム
    • Place of Presentation
      静岡県立大学
    • Year and Date
      2012-03-17
    • Related Report
      2011 Annual Research Report
  • [Presentation] Mad2高結合型ペプチドの動力学的解析2012

    • Author(s)
      杉本渓、杉本佳乃子、伊藤圭祐、河原崎泰昌
    • Organizer
      第13回静岡ライフサイエンスシンポジウム
    • Place of Presentation
      静岡
    • Related Report
      2011 Final Research Report
  • [Presentation] 酵母シグナルペプチドライブラリーを用いたシグナルペプチド最適化ツールの開発2012

    • Author(s)
      原翔一、菅原知宏、佐原健彦1、扇谷悟1、河原崎泰昌2、兒島孝明、中野秀雄
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都
    • Related Report
      2011 Final Research Report
  • [Presentation] 組換え出芽酵母高密度懸濁液による難生産性ラッカーゼの効率的生産2012

    • Author(s)
      齋藤雄太、木全浩一、山口真也、山根恒夫、矢野明、伊藤圭祐、河原崎泰昌
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都
    • Related Report
      2011 Final Research Report
  • [Presentation] High cell-density expression system : A novel method for extracellular production of "difficult-to-express" proteins2012

    • Author(s)
      Kimata K., Yamaguchi M., Saito Y., Yamane T., Nakagawa Y., Yano A., Ito K., Kawarasaki Y
    • Organizer
      The 23rd Annual Meeting of the Thai Society of Biotechnology Systems Biotechnology
    • Place of Presentation
      Bangkok, Thailand
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] 歯垢形成の原因となるグルカン合成酵素の立体構造解析2011

    • Author(s)
      伊藤圭祐, ら
    • Organizer
      日本生物工学会2011年度大会
    • Place of Presentation
      東京農工大
    • Year and Date
      2011-09-27
    • Related Report
      2011 Annual Research Report
  • [Presentation] 大豆ペプチドによる酵母指数増殖期でのタンパク質生産性増強効果2011

    • Author(s)
      疋田礼, ら
    • Organizer
      日本生物工学会2011年度大会
    • Place of Presentation
      東京農工大
    • Year and Date
      2011-09-27
    • Related Report
      2011 Annual Research Report
  • [Presentation] 難生産性組換えラッカーゼの酵母菌体外発現の効率化2011

    • Author(s)
      木全浩一, ら
    • Organizer
      日本生物工学会2011年度大会
    • Place of Presentation
      東京農工大
    • Year and Date
      2011-09-27
    • Related Report
      2011 Annual Research Report
  • [Presentation] 寿命延伸物質ラパマイシンの標的結合活性を擬態するペプチド断片の大規模探索2011

    • Author(s)
      大石章司, ほか
    • Organizer
      第12回静岡ライフサイエンスシンポジウム
    • Place of Presentation
      静岡県立大学、静岡
    • Year and Date
      2011-03-04
    • Related Report
      2010 Annual Research Report
  • [Presentation] 寿命延伸物質ラパマイシンの標的結合活性を技対するペプチド断片の大規模探索2011

    • Author(s)
      大石章司、杉本佳乃子、伊藤圭介、河原崎泰昌
    • Organizer
      第12回静岡ライフサイエンスシンポジウム
    • Place of Presentation
      静岡
    • Related Report
      2011 Final Research Report
  • [Presentation] 糸状菌βガラクトシダーゼを用いたハイスループット膜タンパク質局在解析法の開発2011

    • Author(s)
      伊藤圭祐, ほか
    • Organizer
      日本農芸化学会2011年度大会
    • Place of Presentation
      (震災の影響で誌面発表のみ)
    • Related Report
      2010 Annual Research Report
  • [Presentation] Novel quantitative yeast two-hybrid system : a key technique for discovering peptide-based drugs2010

    • Author(s)
      Sugimoto K, ほか
    • Organizer
      Pacifichem 2010
    • Place of Presentation
      ハワイ、米国
    • Year and Date
      2010-12-17
    • Related Report
      2010 Annual Research Report
  • [Presentation] シイタケラッカーゼLcc1及びLcc4の出芽酵母による分泌発現系の構築とキメラライブラリの作製2010

    • Author(s)
      山口真也, ほか
    • Organizer
      日本生物工学会2010年度大会
    • Place of Presentation
      宮崎
    • Year and Date
      2010-10-29
    • Related Report
      2010 Annual Research Report
  • [Presentation] Quantitative Y2H screening : Cloning and signal peptide engineering of a fungal secretory LacA gene and its application to yeast two-hybrid system as a quantitative reporter2010

    • Author(s)
      Kawarasaki Y., Kamiya T., Sugimoto K., and Ito K
    • Organizer
      The 3rd International Conference on Health and Longevity Sciences
    • Place of Presentation
      University of Shizuoka, Shizuoka, Japan
    • Year and Date
      2010-10-16
    • Related Report
      2011 Final Research Report
  • [Presentation] Quantitative Y2H screening : Cloning and signal peptide engineering of a fungal secretory LacA gene and its application to yeast two-hybrid system as a quantitative reporter2010

    • Author(s)
      Kawarasaki Y., ほか
    • Organizer
      The 3rd International Conference on Health and Longevity Sciences
    • Place of Presentation
      Univ.Shizuoka, Shizuoka
    • Year and Date
      2010-10-16
    • Related Report
      2010 Annual Research Report
  • [Presentation] ヒトMad2高結合型ペプチドの創製と機能解析2010

    • Author(s)
      杉本佳乃子、小島晃代、神谷拓摩、中野秀雄、河原崎泰昌
    • Organizer
      日本農芸化学会2010年度大会
    • Place of Presentation
      東京
    • Related Report
      2011 Final Research Report
  • [Presentation] Novel quantitative yeast two-hybrid system : a key technique for discovering peptide-based drugs2010

    • Author(s)
      Sugimoto K., Ojima T., Kamiya T., Nakano H., Ito K., and Kawarasaki Y
    • Organizer
      Pacifichem 2010
    • Place of Presentation
      Waikiki, Hawaii, USA
    • Related Report
      2011 Final Research Report
  • [Presentation] Toward reverse interactome analysis : Interaction targeting based on interaction domain overexpression2009

    • Author(s)
      Kawarasaki Y
    • Organizer
      The 2nd International Conference on Health and Longevity Sciences
    • Place of Presentation
      University of Shizuoka, Shizuoka, Japan
    • Year and Date
      2009-10-01
    • Related Report
      2011 Final Research Report
  • [Presentation] "リバース・プロテオミクス研究"に向けて・進化工学的手法の開発と蛋白質間相互作用解析への応用2009

    • Author(s)
      河原崎泰昌 神谷拓摩
    • Organizer
      コンビナトリアルバイオエンジニアリング研究会特別シンポジウム
    • Place of Presentation
      大阪大学銀杏会館
    • Year and Date
      2009-04-30
    • Related Report
      2009 Annual Research Report
  • [Presentation] 相互作用ドメイン過剰発現による出芽酵母オートファジーの阻害機構の解析2009

    • Author(s)
      神谷拓摩、池内暁紀、山根恒夫、中野秀雄、河原崎泰昌
    • Organizer
      日本生物工学会2009年度大会
    • Place of Presentation
      名古屋
    • Related Report
      2011 Final Research Report
  • [Presentation] 新規な定量的高速スクリーニング法を用いたヒトMad2蛋白質結合ペプチドの創成2009

    • Author(s)
      杉本佳乃子、神谷拓摩、小島晃代、中野秀雄、河原崎泰昌
    • Organizer
      日本生物工学会2009年度大会
    • Place of Presentation
      名古屋
    • Related Report
      2011 Final Research Report
  • [Presentation] エマルジョン培養法による分泌酵素産生菌の選択的濃縮2009

    • Author(s)
      長尾伸人、安東大介、小島晃代、河原崎泰昌、兒島孝明、中野秀雄
    • Organizer
      日本生物工学会2009年度大会
    • Place of Presentation
      名古屋
    • Related Report
      2011 Final Research Report
  • [Remarks] 研究成果の一部は、研究室ホームページに記載、解説し、広く一般への公開に努めている

    • URL

      http://sfns.u-shizuoka-ken.ac.jp/geneng/index.html

    • Related Report
      2011 Final Research Report

URL: 

Published: 2009-04-01   Modified: 2016-04-21  

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