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Elucidation of dynamics and function of an iPS cell reprogramming factor Sox2 from the view point of an intrinsically disordered protein

Research Project

Project/Area Number 21770126
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Structural biochemistry
Research Institution公益財団法人サントリー生命科学財団 (2010)
Suntory Institute for Bioorganic Research (2009)

Principal Investigator

SUGASE Kenji  公益財団法人サントリー生命科学財団, 生物有機科学研究所, 主席研究員 (00300822)

Project Period (FY) 2009 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2010: ¥1,690,000 (Direct Cost: ¥1,300,000、Indirect Cost: ¥390,000)
Fiscal Year 2009: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Keywords分子認識及び相互作用 / 分子認識および相互作用
Research Abstract

NMR relaxation dispersion studies revealed that Sox2 fluctuates when it is free in solution, in particular the N-terminal helix α1 and the regions contacting the helixα1 are unfolded with a population of 2%. In contrast, no relaxation dispersion was observed for Sox2 in the bound form, indicating that Sox is stable in the bound form on μs-ms timescales. Since the helix α1 binds directly to DNA, the fluctuation observed for the free form is supposed to be important for non-specific binding to DNA.

Report

(3 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • Research Products

    (25 results)

All 2010 2009 Other

All Journal Article (5 results) (of which Peer Reviewed: 5 results) Presentation (16 results) Book (2 results) Remarks (2 results)

  • [Journal Article] Calcitonin in a protochordate, Ciona intestinalis--the prototype of the vertebrate calcitonin/calcitonin gene-related peptide superfamily.2009

    • Author(s)
      Sekiguchi T, Suzuki N, Fujiwara N, Aoyama M, Kawada T, Sugase K, Murata Y, Sasayama Y, Ogasawara M, Satake H
    • Journal Title

      FEBS J. Vol.276

      Pages: 4437-4447

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Calcitonin in a protochordate, Ciona intestinalis-the prototype of the vertebrate calcitonin/calcitonin gene-related peptide superfamily2009

    • Author(s)
      Sekiguchi T, Suzuki N, Fujiwara N, Aoyama M, Kawada T, Sugase K, Murata Y, Sasayama Y, Ogasawara M, Satake H
    • Journal Title

      FEBS J. 276

      Pages: 4437-4447

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Elucidating slow binding kinetics of a protein without observable bound resonances by longitudinal relaxation NMR spectroscopy

    • Author(s)
      Sugase K
    • Journal Title

      J.Biomol.NMR in press

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Lipopolysaccharide induces raft domain expansion in membrane composed of a phospholipid-cholesterol-sphingomyelin ternary system.

    • Author(s)
      Nomura K, Maeda M, Sugase K, Kusumoto S
    • Journal Title

      Innate Immun. in press

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Elucidating slow binding kinetics of a protein without observable bound resonances by longitudinal relaxation NMR spectroscopy

    • Author(s)
      Kenji Sugase
    • Journal Title

      Journal of Biomolecular NMR

      Volume: (in press)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] Fluctuation and function of nuclear proteins2010

    • Author(s)
      菅瀬謙治
    • Organizer
      第48回日本生物物理学会年会
    • Place of Presentation
      仙台
    • Year and Date
      2010-09-20
    • Related Report
      2010 Final Research Report
  • [Presentation] Fluctuation and function of nuclear proteins2010

    • Author(s)
      菅瀬謙治
    • Organizer
      第48回日本生物物理学会年会
    • Place of Presentation
      東北大学(岩手県)
    • Year and Date
      2010-09-20
    • Related Report
      2010 Annual Research Report
  • [Presentation] Fitting Relaxation Dispersion Data With A New Software Package GLOVE2010

    • Author(s)
      菅瀬謙治
    • Organizer
      XXIVth International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      Cairns, Australia
    • Year and Date
      2010-08-24
    • Related Report
      2010 Final Research Report
  • [Presentation] Fitting Relaxation Dispersion Data With A New Software Package GLOVE2010

    • Author(s)
      菅瀬謙治
    • Organizer
      XXIVth International Conference on Magnetic Resonance in Biological Systems
    • Place of Presentation
      Cairns convention centre (Australia)
    • Year and Date
      2010-08-24
    • Related Report
      2010 Annual Research Report
  • [Presentation] NMRによるヘムオキシゲナーゼのヘム認識機構の解明2010

    • Author(s)
      菅瀬謙治
    • Organizer
      大阪大学蛋白質研究所セミナー
    • Place of Presentation
      大阪大学蛋白質研究所(大阪府)
    • Year and Date
      2010-07-30
    • Related Report
      2010 Annual Research Report
  • [Presentation] NMR による天然変性タンパク質の動的構造解析2010

    • Author(s)
      菅瀬謙治
    • Organizer
      第10回日本蛋白質科学会年会
    • Place of Presentation
      札幌
    • Year and Date
      2010-06-18
    • Related Report
      2010 Final Research Report
  • [Presentation] NMRによる天然変性タンパク質の動的構造解析2010

    • Author(s)
      菅瀬謙治
    • Organizer
      第10回日本蛋白質科学会年会
    • Place of Presentation
      札幌コンベンションセンター(北海道)
    • Year and Date
      2010-06-18
    • Related Report
      2010 Annual Research Report
  • [Presentation] 緩和分散解析用プログラムGLOVE2010

    • Author(s)
      菅瀬謙治
    • Organizer
      第49回NMR討論会
    • Place of Presentation
      タワーホール船堀(東京)
    • Year and Date
      2010-06-18
    • Related Report
      2010 Annual Research Report
  • [Presentation] 動きの面から見た核内タンパク質の機能2010

    • Author(s)
      菅瀬謙治
    • Organizer
      ターゲットタンパク研究プログラム第3回研究交流会
    • Place of Presentation
      東京
    • Year and Date
      2010-03-04
    • Related Report
      2010 Final Research Report
  • [Presentation] 動きの面から見た核内タンパク質の機能2010

    • Author(s)
      菅瀬謙治
    • Organizer
      ターゲットタンパク研究プログラム第3回研究交流会
    • Place of Presentation
      東京大学(東京)
    • Year and Date
      2010-03-04
    • Related Report
      2009 Annual Research Report
  • [Presentation] 天然変性状態と機能の相関2009

    • Author(s)
      菅瀬謙治
    • Organizer
      第32回日本分子生物学会
    • Place of Presentation
      横浜
    • Year and Date
      2009-12-11
    • Related Report
      2010 Final Research Report
  • [Presentation] 天然変性状態と機能の相関2009

    • Author(s)
      菅瀬謙治
    • Organizer
      第32回日本分子生物学会
    • Place of Presentation
      パシフィコ横浜(横浜)
    • Year and Date
      2009-12-11
    • Related Report
      2009 Annual Research Report
  • [Presentation] Elucidation of protein-protein interactions by relaxation NMR spectroscopy2009

    • Author(s)
      菅瀬謙治
    • Organizer
      The 3rd APNMR Biannual Asia-Pacific NMR Symposium
    • Place of Presentation
      Jeju, Korea
    • Year and Date
      2009-10-27
    • Related Report
      2010 Final Research Report
  • [Presentation] Elucidation of protein-protein interactions by relaxation NMR spectroscopy2009

    • Author(s)
      菅瀬謙治
    • Organizer
      The 3rd APNMR Biannual Asia-Pacific NMR Symposium
    • Place of Presentation
      Ramada hotel(Jeju, Korea)
    • Year and Date
      2009-10-27
    • Related Report
      2009 Annual Research Report
  • [Presentation] 天然変性タンパク質の構造と機能の最前線2009

    • Author(s)
      菅瀬謙治
    • Organizer
      第49回生命科学夏の学校
    • Place of Presentation
      三田
    • Year and Date
      2009-08-30
    • Related Report
      2010 Final Research Report
  • [Presentation] 天然変性タンパク質の構造と機能の最前線2009

    • Author(s)
      菅瀬謙治
    • Organizer
      第49回 生命科学 夏の学校
    • Place of Presentation
      神戸セミナーハウス(三田)
    • Year and Date
      2009-08-30
    • Related Report
      2009 Annual Research Report
  • [Book] Water and Biomolecules : Physical Chemistry of Life Phenomena (Biological and Medical Physics, Biomedical Engineering) (ed. Kuwajima K, Goto Y, Hirata F, Terazima M, Kataoka M)2009

    • Author(s)
      Wright PE, Felitsky DJ, Sugase K, Dyson HJ
    • Total Pages
      307
    • Related Report
      2010 Final Research Report
  • [Book] Water and Biomolecules : Physical Chemistry of Life Phenomena(Biological and Medical Physics, Biomedical Engineering)(ed.Kuwajima K, Goto Y, Hirata F, Terazima M, Kataoka M)2009

    • Author(s)
      Wright PE, Felitsky DJ, Sugase K, Dyson HJ
    • Total Pages
      307
    • Publisher
      Springer-Verlag
    • Related Report
      2009 Annual Research Report
  • [Remarks] ホームページ等

    • Related Report
      2010 Final Research Report
  • [Remarks]

    • URL

      http://www.sunbor.or.jp

    • Related Report
      2010 Annual Research Report

URL: 

Published: 2009-04-01   Modified: 2016-04-21  

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