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The role of heme-binding, phosphorylation, and degradation in heme-regulated eukaryotic initiation factor 2α kinase (HRI)

Research Project

Project/Area Number 21770130
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Functional biochemistry
Research InstitutionTohoku University

Principal Investigator

IGARASHI Jotaro  Tohoku University, 多元物質科学研究所, 助教 (80375162)

Project Period (FY) 2009 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2010: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2009: ¥3,120,000 (Direct Cost: ¥2,400,000、Indirect Cost: ¥720,000)
Keywordsヘム / 自己リン酸化 / プロテアソーム / 結晶化 / ヘム調節インヒビター / 翻訳開始因子キナーゼ / 脱リン酸化 / ヘム制御モチーフ / 質量分析
Research Abstract

Heme-regulated eukaryotic initiation factor 2α (eIF2α) kinase (HRI), functions in response to heme concentration. Under normal conditions, heme binds to HRI and blocks its function. However, during heme shortage, heme dissociates from the protein, and autophosphorylation subsequently occurs. The molecular mechanism of heme-binding, autophosphorylation, and degradation in HRI remained to be established. In the present study, 1) we demonstrate that His119/His120 and Cys411 are the axial ligands for heme in human HRI, as well as mouse HRI. 2) With the aid of mass spectroscopy we identified 33 phosphorylated sites in mouse HRI overexpressed in Escherichia coli. We further generated 30 enzymes with mutations at the phosphorylated residues and examined the catalytic activities. The activities of Y193F, T485A, and T490A mutants were significantly lower than that of wild-type protein. Accordingly, we suggest that Tyr193, Thr485, and Thr490 are essential residues in the catalysis. 3) Due to degradation of HRI in cultured cell, we show that HRI degradation is induced by 20S proteasome in vitro.

Report

(3 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • Research Products

    (37 results)

All 2011 2010 2009 Other

All Journal Article (12 results) (of which Peer Reviewed: 11 results) Presentation (15 results) Book (6 results) Remarks (4 results)

  • [Journal Article] A hydrogen-bonding network formed by the B10-E7-E11 residues of a truncated hemoglobin from Tetrahymena pyriformis is critical for stability of bound oxygen and nitric oxide detoxification.2011

    • Author(s)
      Igarashi, J., Kobayashi, K., Matsuoka, A.
    • Journal Title

      J.Biol.Inorg.Chem. 16

      Pages: 599-609

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Autophosphorylation of heme-regulated eukaryotic initiation factor 2α kinase, HRI, and the role of the modification in catalysis.2011

    • Author(s)
      Igarashi, J., Sasaki, T., Kobayashi, N., Yoshioka, S., Matsushita, M., Shimizu, T.
    • Journal Title

      FEBS J. 278

      Pages: 918-928

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Heme binding characteristics of the isolated PAS-B domain of mouse Per2, a transcriptional regulatory factor associated with circadian rhythms.2011

    • Author(s)
      Hayasaka, K., Kitanishi, K., Igarashi, J., Shimizu, T.
    • Journal Title

      Biochim.Biophys.Acta 1814

      Pages: 326-333

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] A hydrogen-bonding network formed by the B10-E7-E11 residues of a truncated hemoglobin from Tetrahymena pyriformis is critical for stability of bound oxygen and nitric oxide detoxification2011

    • Author(s)
      Jotaro Igarashi
    • Journal Title

      Journal of Biological Inorganic Chemistry

      Volume: 16 Pages: 599-609

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Autophosphorylation of heme-regulated eukaryotic initiation factor 2α kinase, HRI, and the role of the modification in catalysis2011

    • Author(s)
      Jotaro Igarashi
    • Journal Title

      FEBS Journal

      Volume: 278 Pages: 918-928

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Catalysis and oxygen binding of Ec DOS, a heme-based oxygen-sensor enzyme from Escherichia coli.2010

    • Author(s)
      Kobayashi, K., Tanaka, A., Takahashi, H., Igarashi, J., Ishitsuka, Y., Yokota, N., Shimizu, T.
    • Journal Title

      J.Biochem. 148

      Pages: 693-703

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Important roles of Tyr43 at the putative heme distal side in oxygen recognition and stability of the Fe(II)-O 2 complex of YddV, a globin-coupled heme-based oxygen sensor diguanylate cyclase.2010

    • Author(s)
      Kitanishi, K., Kobayashi, K., Kawamura, Y., Ishigami, I., Ogura, T., Nakajima, K., Igarashi, J., Tanaka, A., Shimizu, T.
    • Journal Title

      Biochemistry 49

      Pages: 10381-10393

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Thiolate with α-lipoic acid remedies depressive behavior of mice induced by methyl-mercury.2010

    • Author(s)
      Kitanishi, K., Igarashi, J., Shimizu, T.
    • Journal Title

      Curr.Top.Toxicol. 6

      Pages: 23-29

    • Related Report
      2010 Final Research Report
  • [Journal Article] Selective neuronal nitric oxide synthase inhibitors and the prevention of cerebral palsy.2009

    • Author(s)
      Ji, H., Tan, S., Igarashi, J., Li, H., Derrick, M., Martasek, P., Roman, L., Vasquez-Vivar, J., Poulos, T.L., Silverman, R.B.
    • Journal Title

      Ann.Neurol. 65

      Pages: 209-217

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] The FG loop of a heme-based gas sensor enzyme, Ec DOS, functions in heme binding, autoxidation and catalysis.2009

    • Author(s)
      Ito, S., Igarashi, J., Shimizu, T.
    • Journal Title

      J.Inorg.Biochem. 103

      Pages: 1380-1385

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Role of Phe113 at the distal side of the heme domain of an oxygen-sensor (Ec DOS) in the characterization of the heme environment.2009

    • Author(s)
      Ito, S., Araki, Y., Tanaka, A., Igarashi, J., Wada, T., Shimizu, T.
    • Journal Title

      J.Inorg.Biochem. 103

      Pages: 989-996

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structures of constitutive nitric oxide synthases in complex with de novo designed inhibitors.2009

    • Author(s)
      Igarashi, J., Li, H., Jamal, J., Ji, H., Fang, J., Lawton, G., Silverman, R.B., Poulos, T.L.
    • Journal Title

      J.Med.Chem. 52

      Pages: 2060-2066

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Presentation] Molecular mechanism of NO-induced catalytic activation of mouse heme-regulated eukaryotic initiation factor 2α kinase, HRI.2010

    • Author(s)
      Igarashi, J., Sasaki, T., Iwashita, J.,Shimizu, T.
    • Organizer
      Pacifichem 2010 Congress.Honolulu
    • Place of Presentation
      HI, USA.
    • Year and Date
      2010-12-16
    • Related Report
      2010 Final Research Report
  • [Presentation] ヘム調節インヒビター(HRI)のヘム・リン酸化による活性調節機構2010

    • Author(s)
      五十嵐城太郎, 佐々木健彦, 清水透
    • Organizer
      第33回日本分子生物学会年会・第82回日本生化学会大会合同大会(BMB2010)
    • Place of Presentation
      神戸
    • Year and Date
      2010-12-10
    • Related Report
      2010 Final Research Report
  • [Presentation] ヘム調節インヒビター(HRI)のヘム・リン酸化による活性調節機構2010

    • Author(s)
      五十嵐城太郎
    • Organizer
      第33回日本分子生物学会年会・第82回日本生化学会年会合同大会(BMB2010)
    • Place of Presentation
      神戸
    • Year and Date
      2010-12-10
    • Related Report
      2010 Annual Research Report
  • [Presentation] NO-induced activation of a heme-sensor, eIF2α kinase, in association with binding to cysteine and heme.2010

    • Author(s)
      Igarashi, J., Sasaki, T., Iwashita, J.,Shimizu, T.
    • Organizer
      6th International Conference, Biology, Chemistry, and Therapeutic Applications of Nitric Oxide.
    • Place of Presentation
      Kyoto,Japan.
    • Year and Date
      2010-06-15
    • Related Report
      2010 Final Research Report
  • [Presentation] ヘム調節インヒビター(HRI)のヘム・リン酸化による反応制御機構2010

    • Author(s)
      五十嵐城太郎, 佐々木健彦, 清水透
    • Organizer
      日本生化学会東北支部第76回例会・シンポジウムム
    • Place of Presentation
      福島
    • Year and Date
      2010-05-08
    • Related Report
      2010 Final Research Report
  • [Presentation] ヘム調節インヒビター(HRI)のヘム・リン酸化による反応制御機構2010

    • Author(s)
      五十嵐城太郎
    • Organizer
      日本生化学会東北支部第76回例会・シンポジウム
    • Place of Presentation
      福島
    • Year and Date
      2010-05-08
    • Related Report
      2010 Annual Research Report
  • [Presentation] Heme-regulated eukaryotic initiation factor 2α kinase associated with protein translation.2010

    • Author(s)
      Igarashi, J.,Shimizu, T.
    • Organizer
      Gordon Research Conference on Protein Cofactors, Radicals and Quinones.
    • Place of Presentation
      Ventura, CA, USA.
    • Related Report
      2010 Final Research Report
  • [Presentation] Heme-regulated eukaryotic initiation factor 2α kinase associated with protein translation2010

    • Author(s)
      Jotaro Igarashi
    • Organizer
      Gordon Research Conference on Protein Cofactors, Radicals and Quinones
    • Place of Presentation
      Ventura, CA, USA
    • Related Report
      2010 Annual Research Report
  • [Presentation] ヘム調節インヒビター(HRI)の活性調節機構:ヘム結合及びリン酸化について2009

    • Author(s)
      五十嵐城太郎, 佐々木健彦, 岩下隼, 清水透
    • Organizer
      第82回日本生化学会大会会
    • Place of Presentation
      神戸
    • Year and Date
      2009-10-22
    • Related Report
      2010 Final Research Report
  • [Presentation] Molecular mechanism of HRI : Heme binding and autophosphorylation2009

    • Author(s)
      五十嵐城太郎
    • Organizer
      第82回日本生化学会大会
    • Place of Presentation
      神戸
    • Year and Date
      2009-10-22
    • Related Report
      2009 Annual Research Report
  • [Presentation] Oxygen stability and crystal structure of Tetrahymena truncated hemoglobin.2009

    • Author(s)
      Igarashi, J., Matsuoka, A.
    • Organizer
      14th International Conference on Biological Inorganic Chemistry (ICBIC14).
    • Place of Presentation
      Nagoya, Japan.
    • Year and Date
      2009-07-29
    • Related Report
      2010 Final Research Report
  • [Presentation] Oxygen stability and crystal structure of Tetrahymena truncated hemoglobin2009

    • Author(s)
      五十嵐城太郎
    • Organizer
      14th International Conference of Biological Inorganic Chemistry
    • Place of Presentation
      名古屋
    • Year and Date
      2009-07-29
    • Related Report
      2009 Annual Research Report
  • [Presentation] The heme-binding site of the heme-regulated inhibitor (HRI), and the role of heme regulatory motif in heme sensing.2009

    • Author(s)
      Igarashi, J.,Murase, M., Shimizu, T.
    • Organizer
      16th International Conference on Cytochrome P450, Biochemisty, Biphysics, Functional Genomics.
    • Place of Presentation
      Nago, Japan.
    • Year and Date
      2009-06-23
    • Related Report
      2010 Final Research Report
  • [Presentation] The heme-binding site of the heme-regulated inhibitor(HRI), and the role of the heme regulatory motif in heme sensing2009

    • Author(s)
      五十嵐城太郎
    • Organizer
      16th International Conference on Cytochrome P450
    • Place of Presentation
      名護
    • Year and Date
      2009-06-23
    • Related Report
      2009 Annual Research Report
  • [Presentation] ヘム調節インヒビター(HRI)の-酸化窒素による活性調節機構:S-ニトロシル化の検討2009

    • Author(s)
      五十嵐城太郎, 岩下隼, 佐々木健彦, 清水透
    • Organizer
      第9回日本NO学会学術集会会
    • Place of Presentation
      静岡
    • Year and Date
      2009-05-08
    • Related Report
      2010 Final Research Report
  • [Book] Emerging Role of Heme as a Signal and the Gas-Sensing Site : Heme-Sensing and Gas-Sensing Proteins.Handbook of Porphyrin Science (Kadish, K.M., Smith, K.M., Guilard, R.Eds.)2011

    • Author(s)
      Igarashi, J., Kitanishi, K., Shimizu, T.
    • Publisher
      World Scientific (Hackensack, NJ, USA)
    • Related Report
      2010 Final Research Report
  • [Book] Handbook of Porphyrin Science Vol 152011

    • Author(s)
      Jotaro Igarashi(分担執筆)
    • Publisher
      World Scientific
    • Related Report
      2010 Annual Research Report
  • [Book] 酵素利用技術体系(小宮山眞編)(シトクロムP450.)2010

    • Author(s)
      五十嵐城太郎, 清水透
    • Publisher
      エヌ・ティー・エス(東京)
    • Related Report
      2010 Final Research Report
  • [Book] 酵素利用技術体系2010

    • Author(s)
      五十嵐城太郎(分担執筆)
    • Publisher
      エヌ・ティー・エス
    • Related Report
      2010 Annual Research Report
  • [Book] の分子生物学 第2版(大村恒雄, 石村巽, 藤井義明編)(のヘムーチオレート蛋白質の構造と機能.P450)2009

    • Author(s)
      五十嵐城太郎, 清水透, 他
    • Publisher
      講談社(東京)
    • Related Report
      2010 Final Research Report
  • [Book] P450の分子生物学(大村恒雄、石村巽、藤井義明編)2009

    • Author(s)
      五十嵐城太郎
    • Total Pages
      303
    • Publisher
      講談社
    • Related Report
      2009 Annual Research Report
  • [Remarks] ホームページ等

    • URL

      http://www.tagen.tohoku.ac.jp/labo/shimizu/

    • Related Report
      2010 Final Research Report
  • [Remarks]

    • URL

      http://db.tohoku.ac.jp/whois/Tunv_Title_All.php?&user_num=z8/Pz8/Pz8/Mz8zH&sel1=1&sel2=1&sel3=1&sel4=0&page=1&lang=J

    • Related Report
      2010 Final Research Report
  • [Remarks]

    • URL

      http://db.tohoku.ac.jp/whois/detail/1574b096d2e56102954b499022bff4e2.html

    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • URL

      http://db.tohoku.ac.jp/whois/detail/1574b096d2e56102954b499022bff4e2.html

    • Related Report
      2009 Annual Research Report

URL: 

Published: 2009-04-01   Modified: 2016-04-21  

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