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Is there common mechanism in the divergent PAS domain signal transduction?

Research Project

Project/Area Number 21770175
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Biophysics
Research InstitutionNara Institute of Science and Technology

Principal Investigator

YAMAZAKI Yoichi  Nara Institute of Science and Technology, 物質創成科学研究科, 助教 (40332770)

Project Period (FY) 2009 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2010: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2009: ¥3,510,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥810,000)
Keywords光生物学 / シグナル伝達 / タンパク質間相互作用 / PASドメイン
Research Abstract

To elucidate activation mechanism retained in PAS domain family protein, two different Photoactive Yellow Protein (PYP) were investigated as model proteins. In the results, 1) N-terminal regions in both PYPs owned functionally important part in each PYP, 2) co-factor binding region was almost same each other but small differences affects the co-factors features, 3) C-terminal structural scaffold mainly decided each PYP propensities ,the other part in each sequence affected by coupling with the C-terminal region.

Report

(3 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • Research Products

    (19 results)

All 2011 2010 2009

All Journal Article (4 results) (of which Peer Reviewed: 4 results) Presentation (15 results)

  • [Journal Article] Systematic alanine insertion reveals the essential regions that encode structure formation and activity of dihydrofolate reductase.2011

    • Author(s)
      R.Shiba, M.Umeyama, S.Tsukasa, H.Kamikubo, Y.Yamazaki, M.Yamaguchi, M.Iwakura, M.Kataoka
    • Journal Title

      BIOPHYSICS 7巻

      Pages: 1-10

    • NAID

      130000406413

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Systematic alanine insertion reveals the essential regions that encode structure formation and activity of dihydrofolate reductase2011

    • Author(s)
      R.Shiba, M.Umeyama, S.Tsukasa, H.Kamikubo, Y.Yamazaki, M.Yamaguchi, M.Iwakura, M.Kataoka
    • Journal Title

      BIOPHYSICS

      Volume: 7 Pages: 1-10

    • NAID

      130000406413

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Nonlocal interactions are responsible for tertiary structure formation in staphylococcal nuclease.2010

    • Author(s)
      Kato S, Kamikubo H, Hirano S, Yamazaki Y, Kataoka M.
    • Journal Title

      Biophys J. 98巻

      Pages: 678-686

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Nonlocal interactions are responsible for tertiary structure formation in staphylococcal nuclease.2010

    • Author(s)
      Kato S, Kamikubo H, Hirano S, Yamazaki Y, Kataoka M.
    • Journal Title

      Biophys J. 98

      Pages: 678-686

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] Analysis of solution state of the interaction protein of Rc-PYP.2010

    • Author(s)
      M.Hayashi, Y.Yamazaki, H.Kamikubo, M.
    • Organizer
      第48回日本生物物理学会年会
    • Place of Presentation
      仙台
    • Year and Date
      2010-09-21
    • Related Report
      2010 Final Research Report
  • [Presentation] Substitution effects of basic residues in the photoactive yellow protein of Rhodobacter caplslatus.2010

    • Author(s)
      Y.Yamazaki, H.Kamikubo, M.Kataoka.
    • Organizer
      第48回日本生物物理学会年会
    • Place of Presentation
      仙台
    • Year and Date
      2010-09-21
    • Related Report
      2010 Final Research Report
  • [Presentation] Substitution effects of basic residues in the photoactive yellow prote in of Rhodobacter caplsulatus.2010

    • Author(s)
      Y.Yamazaki, H.Kamikubo, M.Kataoka
    • Organizer
      日本生物物理学会
    • Place of Presentation
      仙台
    • Year and Date
      2010-09-20
    • Related Report
      2010 Annual Research Report
  • [Presentation] Photoactive Yellow Proteinにおける発色団の機能変調2010

    • Author(s)
      山崎洋一, 上久保裕生, 片岡幹
    • Organizer
      第16回日本光生物学協会年会
    • Place of Presentation
      大阪
    • Year and Date
      2010-08-11
    • Related Report
      2010 Final Research Report
  • [Presentation] Photoactive Yellow Proteinにおける発色団の機能変調2010

    • Author(s)
      山崎洋一、上久保裕生、片岡幹雄
    • Organizer
      日本光生物学協会
    • Place of Presentation
      吹田市
    • Year and Date
      2010-08-11
    • Related Report
      2010 Annual Research Report
  • [Presentation] 2種類のPYPにおける発色団の機能変調2010

    • Author(s)
      山崎洋一、上久保裕生、片岡幹雄
    • Organizer
      分子研研究会
    • Place of Presentation
      岡崎
    • Year and Date
      2010-03-23
    • Related Report
      2010 Final Research Report
  • [Presentation] 2種類のPYPにおける発色団の機能変調2010

    • Author(s)
      山崎洋一、上久保裕生、片岡幹雄
    • Organizer
      分子研研究会「拡がるロドプシンの仲間から"何がわかるか""何をもたらすか"」
    • Place of Presentation
      自然科学研究機構岡崎コンフェレンスセンター(岡崎)
    • Year and Date
      2010-03-23
    • Related Report
      2009 Annual Research Report
  • [Presentation] Light dependent enzyme activity control by use of interaction of the Rc-PYP.2009

    • Author(s)
      H.Kubo, Y.Yamazaki, H.Kamikubo, M.Kataoka.
    • Organizer
      第47回日本生物物理学会年会
    • Place of Presentation
      徳島
    • Year and Date
      2009-10-30
    • Related Report
      2010 Final Research Report
  • [Presentation] Interaction mechanism of the photoactive yellow protein ofRhodobacter caplsolatus.2009

    • Author(s)
      Y.Yamazaki, N.Ota, H.Kamikubo, M.Kataoka.
    • Organizer
      第47回日本生物物理学会年会
    • Place of Presentation
      徳島
    • Year and Date
      2009-10-30
    • Related Report
      2010 Final Research Report
  • [Presentation] The low-temperature spectroscopy of Rc-PYP.2009

    • Author(s)
      Y.Hamaguchi, Y.Yamazaki, H.Kamikubo, M.Kataoka.
    • Organizer
      第47回日本生物物理学会年会
    • Place of Presentation
      徳島
    • Year and Date
      2009-10-30
    • Related Report
      2010 Final Research Report
  • [Presentation] Analysis of the different properties in two PYPs by use of chimera proteins.2009

    • Author(s)
      K.Matsumoto, Y.Yamazaki, H.Kamikubo, M.Kataoka.
    • Organizer
      第47回日本生物物理学会年会
    • Place of Presentation
      徳島
    • Year and Date
      2009-10-30
    • Related Report
      2010 Final Research Report
  • [Presentation] Low-barrier hydrogen bond in photoactive yellow protein.2009

    • Author(s)
      S.Yamaguchi, H.Kamikubo, K.Kurihara, R.Kuroki, Y.Yamazaki, M.Kataoka.
    • Organizer
      第47回日本生物物理学会年会
    • Place of Presentation
      徳島
    • Year and Date
      2009-10-30
    • Related Report
      2010 Final Research Report
  • [Presentation] Interaction mechanism of the photoactive yellow protein of Rhodobacter caplsulatus.2009

    • Author(s)
      Yamazaki, Y., Ota, N., Kamikubo, H., Kataoka, M.
    • Organizer
      日本生物物理学会
    • Place of Presentation
      アフティ徳島(徳島)
    • Year and Date
      2009-10-30
    • Related Report
      2009 Annual Research Report
  • [Presentation] 光合成細菌Rhodobacter capsulatus由来PYPの光反応のpH依存性2009

    • Author(s)
      Y.Yamazaki, M.Sakoguchi, H.Kamikubo, M.Kataoka.
    • Organizer
      第15回日本光生物学協会年会
    • Place of Presentation
      岡崎
    • Year and Date
      2009-08-19
    • Related Report
      2010 Final Research Report
  • [Presentation] 光合成細菌Rhodobacter capsulatus由来PYPの光反応のpH依存性2009

    • Author(s)
      Y.Yamazaki, M.Sakoguchi, H.Kamikubo, M.Kataoka
    • Organizer
      日本光生物学協会
    • Place of Presentation
      自然科学研究機構岡崎コンフェレンスセンター(岡崎)
    • Year and Date
      2009-08-19
    • Related Report
      2009 Annual Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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