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Quantitative Analysis of Morphogenesis by Whole-animal 4D-imaging

Research Project

Project/Area Number 21770241
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Developmental biology
Research InstitutionKeio University

Principal Investigator

HOTTA Kohji  慶應義塾大学, 理工学部, 講師 (80407147)

Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2011: ¥780,000 (Direct Cost: ¥600,000、Indirect Cost: ¥180,000)
Fiscal Year 2010: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2009: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywords末梢神経 / 3Dライブイメージング / 進化 / 3D / ホヤ / 神経管閉鎖 / 脊索動物 / 尾芽胚 / 器官形成 / 脊索 / 形態形成 / ASNET / イメージング
Research Abstract

To understand morphogenesis at single-cell-level in chordate organogenesis period, ascidian embryo was used in this study. By 3D imaging of ascidian larva, a novel peripheral neuron network structure was found at larval outer tunic. Computer model of the tailbud embryo were made. By 3D-live(4D) imaging of neural tube closure, it was suggested that two independent cell movements accomplish the closure. Thus high-resolution imaging of ascidian embryogenesis enables us to understand how each cell cause morphogenesis of tissue, organ and whole-animal level.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (36 results)

All 2012 2011 2010 2009 Other

All Journal Article (9 results) (of which Peer Reviewed: 9 results) Presentation (21 results) Remarks (6 results)

  • [Journal Article] Network structure of projections extending from peripheral neurons in tunic of ascidian larva2010

    • Author(s)
      Hiroshi Q. Terakubo, Yoko Nakajima, Yasunori Sasakura, Takeo Horie, Alu Konno, Hiroki Takahashi, Kazuo Inaba, Kohji Hotta and Kotaro Oka
    • Journal Title

      Developmental Dynamics, DD ArtPix Developmental Dynamics

      Volume: 239(8) Pages: 2278-87

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Regulation of notochord-specific expression of Ci-Bra downstream genes in Ciona intestinalis embryos2010

    • Author(s)
      Hiroki Takahashi, Kohji Hotta, Chiyo Takagi, Naoto Ueno, Nori Satoh, Eiichi Shoguchi
    • Journal Title

      Zoological Sci.

      Volume: 27(2) Pages: 110-118

    • NAID

      40017358561

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Distribution and structural diversity of cilia in the tadpole larvae of the ascidian Ciona intestinalis2010

    • Author(s)
      Alu Konno, Maiko Kaizu, Kohji Hotta, Takeo Horie, Yasunori Sasakura, Kazuho Ikeo and Kazuo Inaba
    • Journal Title

      Developmental Biology, Epub

      Volume: 337(1) Pages: 42-62

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Network structure of projections extending from peripheral neurons in tunic of ascidian larva2010

    • Author(s)
      Hiroshi Q.Terakubo, Yoko Nakajima, Yasunori Sasakura, Takeo Horie, Alu Konno, Hiroki Takahashi, Kazuo Inaba, Kohji Hotta, Kotaro Oka
    • Journal Title

      Developmental Dynamics

      Volume: 239 Pages: 2278-87

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The ANISEED database : digital representation, formalisation and elucidation of a chordate developmental program2010

    • Author(s)
      O.Tassy, D.Dauga, F.Daian, D.Sobral, F.Robin, P.Khoueiry, D.Salgado, V.Fox, D.Caillo, M.Contensin, Renaud Schiappa, Anne Rios, Guillaume Luxardi, M.Gilchrist, K.Makabe, K.Hotta, Fujiwara, T.Kusakabe, N.Satoh, Y.Satou, P.Lemaire
    • Journal Title

      Genome Research.

      Volume: 20 Pages: 1459-68

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Distribution and structural diversity of cilia in the tadpole larvae of the ascidian Ciona intestinalis2010

    • Author(s)
      Alu Konno, Maiko Kaizu, Kohii Hotta, Takeo Horie, Yasunori Sasakura, Kazuho Ikeo, Kazuo Inaba
    • Journal Title

      Developmental Biology 337(1)

      Pages: 42-62

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Regulation of notochord-specific expression of Ci-Bra downstream genes in Ciona intestinalis embryos2010

    • Author(s)
      Hiroki Takahashil, Kohji Hotta, Chiyo Takagi, Naoto Ueno, Nori Satoh, Eiichi Shoguchi
    • Journal Title

      Zoological Sci. 27(2)

      Pages: 110-118

    • NAID

      40017358561

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Interaction of notochord-derived fibrinogen-like protein with Notch regulates the patterning of the central nervous system of Ciona intestinalis embryos2009

    • Author(s)
      Shigehiro Yamada, Kohji Hotta, Takamasa S. Yamamoto, Naoto Ueno, Nori Satoh and Hiroki Takahashi
    • Journal Title

      Developmental Biology

      Volume: 328(1) Pages: 1-12

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Interaction of notochord-derived fibrinogen-like protein with Notch regulates the patterning of the central nervous system of Ciona intestinalis embryos2009

    • Author(s)
      Shigehiro Yamada, Kohji Hotta, Takamasa S.Yamamoto, Naoto Ueno, Nori Satoh, Hiroki Takahashi
    • Journal Title

      Developmental Biology 328(1)

      Pages: 1-12

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] Construction of 3D Virtual Tailbud Embryo For Quantitative Approach CDB Symposium2012

    • Author(s)
      Kohji Hotta
    • Organizer
      Quantitative Developmental Biology
    • URL

      http://www.cdb.riken.jp/sympo2012/

    • Place of Presentation
      理化学研究所発生・再生科学総合研究センター(神戸)
    • Year and Date
      2012-03-27
    • Related Report
      2011 Final Research Report
  • [Presentation] Construction of 3D Virtual Tailbud Embryo For Quantitative Approach2012

    • Author(s)
      Kohji Hotta
    • Organizer
      CDB Symposium 2012 "Quantitative Developmental Biology"
    • Place of Presentation
      理化学研究所発生・再生科学総合研究センター(神戸)
    • Year and Date
      2012-03-26
    • Related Report
      2011 Annual Research Report
  • [Presentation] カタユウレイボヤ尾芽胚の3次元モデリング2012

    • Author(s)
      堀田耕司
    • Organizer
      画像科学シンポジウム・バイオイメージングフォーラム
    • Place of Presentation
      自然科学研究機構岡崎コンファレンスセンター(招待講演)
    • Year and Date
      2012-03-05
    • Related Report
      2011 Annual Research Report
  • [Presentation] カタユウレイボヤ尾芽胚の1細胞レベルイメージングと3Dコンピュータ・モデリングによる形態解析2011

    • Author(s)
      堀田耕司
    • Organizer
      生物物理学会シンポジウム一個体イメージング
    • Place of Presentation
      兵庫県立大学姫路キャンパス(招待講演)
    • Year and Date
      2011-09-16
    • Related Report
      2011 Annual Research Report
  • [Presentation] Three-dimensional cellular-level anatomy and comprehensive annotation of tailbud embryo in Ciona intestinalis2011

    • Author(s)
      Mitsuru J. Nakamura, Jun Terai, Reiko Okubo, Kohji Hotta and Kotaro Oka
    • Organizer
      The 6th International Tunicate Meeting
    • Place of Presentation
      McGill Univ., Montreal, Canada
    • Year and Date
      2011-07-04
    • Related Report
      2011 Final Research Report
  • [Presentation] Analysis of phenotype caused by temporal treatment of SU4984 in Ciona intestinalis embryo2011

    • Author(s)
      Jun Terai, Mayu Suzuki, Masaya Imoto, Etsu Tashiro, Kotaro Oka, Kohji Hotta
    • Organizer
      The 6th International Tunicate Meeting
    • Place of Presentation
      McGill Univ., Montreal, Canada
    • Year and Date
      2011-07-04
    • Related Report
      2011 Annual Research Report 2011 Final Research Report
  • [Presentation] ASNET : Actin-based network structure in the tunic of ascidian larva2010

    • Author(s)
      Kohji HOTTA, Hiroshi Q TERAKUBO, Mitsuru Nakamura, Yoko NAKAJIMA, Yasunori SASAKURA, Takeo HORIE, Alu KONNO, Hiroki TAKAHASHI, Kazuo INABA, Kotaro OKA
    • Organizer
      Society for Developmental Biology 69th Annual Meeting-Jointly with Japanese Society of Developmental Biologists
    • Place of Presentation
      New Mexico, USA
    • Year and Date
      2010-08-08
    • Related Report
      2011 Final Research Report
  • [Presentation] Quantitative analysis of ascidian tailbud stage embryo at single cell level by constructing 3D Virtual Embryo2010

    • Author(s)
      Mitsuru Nakamura, Jun Terai, Kohji Hotta and Kotaro Oka
    • Organizer
      Society for Developmental Biology 69th Annual Meeting-Jointly with Japanese Society of Developmental Biologists
    • Place of Presentation
      New Mexico, USA
    • Year and Date
      2010-08-08
    • Related Report
      2011 Final Research Report
  • [Presentation] FGFR inhibitor affect proliferation of tail epidermal cells and cause neural tube closure defect in ascidian Ciona intestinalis2010

    • Author(s)
      Jun Terai, Mayu Suzuki, Masaya Imoto, Etsu Tashiro, Kotaro Oka, Kohji Hotta
    • Organizer
      Society for Developmental Biology 69th Annual Meeting-Jointly with Japanese Society of Developmental Biologists
    • Place of Presentation
      New Mexico
    • Year and Date
      2010-08-08
    • Related Report
      2011 Final Research Report
  • [Presentation] ASNET : Actin-based network structure in the tunic of ascidian larva2010

    • Author(s)
      Kohji HOTTA, Hiroshi Q TERAKUBO, Mitsuru Nakamura, Yoko NAKAJIMA, Yasunori SASAKURA, Takeo HORIE, Alu KONNO, Hiroki TAKAHASHI, Kazuo INABA, Kotaro OKA
    • Organizer
      Society for Developmental Biology 69th Annual Meeting -Jointly with Japanese Society of Developmental Biologists
    • Place of Presentation
      Albuquerque, New Mexico, USA
    • Year and Date
      2010-08-08
    • Related Report
      2010 Annual Research Report
  • [Presentation] Quantitative analysis of ascidian tailbud stage embryo at single cell level by constructing 3D Virtual Embryo2010

    • Author(s)
      Mitsuru Nakamura, Jun Terai, Kohji Hotta, Kotaro Oka
    • Organizer
      Society for Developmental Biology 69th Annual Meeting -Jointly with Japanese Society of Developmental Biologists
    • Place of Presentation
      Albuquerque, New Mexico, USA
    • Year and Date
      2010-08-07
    • Related Report
      2010 Annual Research Report
  • [Presentation] FGFR inhibitor affect proliferation of tail epidermal cells and cause neural tube closure defect in ascidian Cionaintestinalis2010

    • Author(s)
      Jun Terai, Mayu Suzuki, Masaya Imoto, Etsu Tashiro, Kotaro Oka, Kohji Hotta
    • Organizer
      Society for Developmental Biology 69th Annual Meeting -Jointly with Japanese Society of Developmental Biologists
    • Place of Presentation
      Albuquerque, New Mexico, USA
    • Year and Date
      2010-08-05
    • Related Report
      2010 Annual Research Report
  • [Presentation] Actin-based network structure in the tunic of ascidian larva revealed by confocal laser scanning and transmission electron microscopes(共焦点顕微鏡および透過型電子顕微鏡により明らかにされたホヤ幼生被嚢内新規ネットワーク構造)2010

    • Author(s)
      KOHJI HOTTA, Hiroshi Terakubo, Yoko Nakajima, Yasunori Sasakura, Takeo Horie, Alu Konno, Hiroki Takahashi, Kazuo Inaba, Kotaro Oka
    • Organizer
      43rd Annual Meeting for the Japanese Society of Developmental Biologists Jointly Sponsored by the Asia-Pacific Developmental Biology Network
    • Place of Presentation
      Kyoto, International Conference Center
    • Year and Date
      2010-06-22
    • Related Report
      2011 Final Research Report
  • [Presentation] Actin-based network structure in the tunic of ascidian larva revealed by confocal laser scanning andtransmission electron microscopes2010

    • Author(s)
      KOHJI HOTTA, Hiroshi Terakubo, Yoko Nakajima, Yasunori Sasakura, Takeo Horie, Alu Konno, Hiroki, Takahashi, Kazuo Inaba, Kotaro Oka
    • Organizer
      43rd Annual Meeting for the Japanese Society of Developmental Biologists Jointly Sponsored by the Asia-Pacific Developmental Biology Network
    • Place of Presentation
      Kyoto, International Conference Center
    • Year and Date
      2010-06-21
    • Related Report
      2010 Annual Research Report
  • [Presentation] Ascidian dendritic network in tunic2010

    • Author(s)
      Kohji HOTTA, Hiroshi Q TERAKUBO, Yoko NAKAJIMA, Alu KONNO, Takeo HORIE, Hiroki TAKAHASHI, Yasunori SASAKURA, Kazuo INABA, Kotaro OKA
    • Organizer
      2ND JOINT MEETING OF THE SFBD AND JSDB 2010-From Cells to Organs
    • Place of Presentation
      Institut Pasteur, Paris, France
    • Year and Date
      2010-05-27
    • Related Report
      2011 Final Research Report
  • [Presentation] Ascidian dendritic network in tunic2010

    • Author(s)
      Kohji HOTTA, Hiroshi Q TERAKUBO, Yoko NAKAJIMA, Alu KONNO, Takeo HORIE, Hiroki TAKAHASHI, Yasunori SASAKURA, Kazuo INABA, Kotaro OKA
    • Organizer
      2ND JOINT MEETING OF THE SFBD AND JSDB 2010
    • Place of Presentation
      Institut Pasteur, Paris, France
    • Year and Date
      2010-05-27
    • Related Report
      2010 Annual Research Report
  • [Presentation] FABA2 : A web-based interactive developmental table for the ascidian from hatching larva to juvenile2009

    • Author(s)
      Kohji Hotta, Akitsu Fukuzawa, Kazuho Ikeo, Takashi Gojobori, Kazuo Inaba, Kotaro Oka
    • Organizer
      International Symposium Marine Genomics
    • Place of Presentation
      Okinawa, Hotel Sourthern Plaza Kaiho
    • Year and Date
      2009-12-16
    • Related Report
      2009 Annual Research Report
  • [Presentation] Distribution and structural diversity of cilia in the tadpole larvae of the ascidian Ciona intestina2009

    • Author(s)
      Alu Konno, Maiko Kaizu, Kohji Hotta, Takeo Horie, Yasunori Sasakura, Kazuho Ikeo, Kazuo Inaba
    • Organizer
      5th International Tunicate Meeting
    • Place of Presentation
      沖縄、小禄、沖縄産業支援センター
    • Year and Date
      2009-06-24
    • Related Report
      2011 Final Research Report
  • [Presentation] FABA2 : Three dimensional real-image embryo reconstructions for standardizing developmental stages from hatching larva to juvenile2009

    • Author(s)
      K.Hotta, A.Fukuzawa, K.Mitsuhara, K.Ikeo, T.Gojobori, K.Inaba, K.Oka
    • Organizer
      5th International Tunicate Meeting
    • Place of Presentation
      沖縄、小禄、沖縄産業支援センター
    • Year and Date
      2009-06-24
    • Related Report
      2009 Annual Research Report
  • [Presentation] The structure and evolution of caudal epidermal neurons in ascidian larva2009

    • Author(s)
      Hiroshi Q. Terakubo, Hiroki Takahashi, Yoko Nakajima, Yasunori Sasakura, Takeo Horie, Kohji Hotta & Kotaro Oka
    • Organizer
      5th International Tunicate Meeting
    • Place of Presentation
      沖縄、小禄、沖縄産業支援センター
    • Year and Date
      2009-06-23
    • Related Report
      2011 Final Research Report 2009 Annual Research Report
  • [Presentation] Ascidians : An Emerging Model in Chemical-Developmental Biology and High-throughput Whole-Animal Chemical Screening2009

    • Author(s)
      Yuichiro Hira, Jun Terai, Masaya Imoto, Kotaro Oka, Etsu Tashiro, Kohji Hotta
    • Organizer
      5th International Tunicate Meeting
    • Place of Presentation
      沖縄、小禄、沖縄産業支援センター
    • Year and Date
      2009-06-22
    • Related Report
      2009 Annual Research Report
  • [Remarks] (1)三次元個体表現型データベースのプロトタイプ(3DPL)作成

    • URL

      http://chordate.bpni.bio.keio.ac.jp/3dpl/top.html

    • Related Report
      2011 Final Research Report
  • [Remarks] (2)ホヤAnatomical ontologyに基づく細胞系譜情報

    • URL

      http://chordate.bpni.bio.keio.ac.jp/faba/cell_lineage2/

    • Related Report
      2011 Final Research Report
  • [Remarks] 三次元個体表現型データベース

    • URL

      http://chordate.bpni.bio.keio.ac.jp/3dpl/top.html

    • Related Report
      2011 Annual Research Report
  • [Remarks] ホヤ細胞系譜情報

    • URL

      http://chordate.bpni.bio.keio.ac.jp/faba/cell_lineage2/

    • Related Report
      2011 Annual Research Report
  • [Remarks] ホヤAnatomical ontologyに基づく細胞系譜情報

    • URL

      http://chordate.bpni.bio.keio.ac.jp/faba/cell_lineage2/

    • Related Report
      2010 Annual Research Report
  • [Remarks] 三次元個体表現型データベースのプロトタイプ(3DPL)作成

    • URL

      http://chordate.bpni.bio.keio.ac.jp/3dp1/top.html

    • Related Report
      2009 Annual Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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