• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Structural bioinformatics analysis of antigenic changes in influenza virus hemagglutinin

Research Project

Project/Area Number 21780272
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Applied veterinary science
Research InstitutionHokkaido University

Principal Investigator

IGARASHI Manabu  Hokkaido University, 人獣共通感染症サーチセンター, 特任助教 (10374240)

Project Period (FY) 2009 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2010: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2009: ¥3,380,000 (Direct Cost: ¥2,600,000、Indirect Cost: ¥780,000)
Keywords人畜共通感染症 / インフルエンザ / ウイルス / 感染症 / 生体生命情報学 / 計算科学 / 分子シミュレーション / 糖鎖 / 蛋白質
Research Abstract

The hemagglutinin (HA) of influenza A viruses undergoes antigenic changes to escape from antibody-mediated immune pressure. In order to control for influenza, it is important to understand the patterns of amino acid substitutions in the past and then to predict possible antigenic changes of the HA molecules in future. In this study, we analyzed the change of HA antigenic structures in the evolutionary process of influenza viruses in the human population, by using structural bioinformatics approach. Based on the results, we predicted possible amino acid substitutions that might be associated with future antigenic change of 2009 H1N1.

Report

(3 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • Research Products

    (34 results)

All 2011 2010 2009

All Journal Article (19 results) (of which Peer Reviewed: 19 results) Presentation (15 results)

  • [Journal Article] Characterization of influenza A viruses isolated from wild waterfowls in Zambia2011

    • Author(s)
      Simulundu E, Ishii A, Igarashi M, Mweene A, Suzuki Y, Hang'ombe B, Namangala B, Moonga L, Manzoor R, Ito K, Nakamura I, Sawa H, Sugimoto C, Kida H, Simukonda C, Chansa W, Chulu J, Takada A
    • Journal Title

      J Gen Virol. in press

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Involvement of viral envelope GP2 in Ebola virus entry into cells expressing the macrophage galactose-type C-type lectin.2011

    • Author(s)
      Usami K, Matsuno K, Igarashi M, Denda-Nagai K, Takada A, Irimura T
    • Journal Title

      Biochem Biophys Res Commun 407

      Pages: 74-78

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Prediction of the antigenic changes of the pandemic (H1N1) 2009 influenza virus hemagglutinin.2011

    • Author(s)
      Igarashi M, Ito K, Yoshida R, Tomabechi D, Kida H, Takada A
    • Journal Title

      Influenza and other respiratory viruses 5(supple.1)

      Pages: 402-404

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Genetic characterization and susceptibility on poultry and mammal of H7N6 subtype avian influenza virus isolated in Japan in 2009.2011

    • Author(s)
      Uchida Y, Kanehira K, Mase M, Takemae N, Watanabe C, Ito T, Igarashi M, Ito K, Takada A, Sakoda Y, Okamatsu M, Yamamoto Y, Nakamura K, Kida H, Hiromoto Y, Tsuda T, Saito T
    • Journal Title

      Vet Microbiol. 147(1-2)

      Pages: 1-10

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Genetic characterization and susceptibility on poultry and mammal of H7N6 subtype avian influenza virus isolated in Japan in 20092011

    • Author(s)
      Uchida Y, Kanehira K, Mass M, Takemae N, Watanabe C, Ito T, Igarashi M, Ito K, Takada A, Sakoda Y, Okamatsu M, Yamamoto Y, Nakamura K, Kida H, Hiromoto Y, Tsuda T, Saito T
    • Journal Title

      Vet Microbiol.

      Volume: 147(1-2) Pages: 1-10

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Involvement of viral envelope GP2 in Ebola virus entry into cells expressing the macrophage galactose-type C-type lectin2011

    • Author(s)
      Usami K, Matsuno K, Igarashi M, Denda-Nagai K, Takada A, Irimura T
    • Journal Title

      Biochem Biophys Res Commun

      Volume: (in press)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of influenza A viruses isolated from wild waterfowls in Zambia2011

    • Author(s)
      Simulundu E, Ishii A, Igarashi M, Mweene A, Suzuki Y, Hang'ombe B, Namangala B, Moonga L, Manzoor R, Ito K, Nakamura I, Sawa H, Sugimoto C, Kida H, Simukonda C, Chansa W, Chulu J, Takada A
    • Journal Title

      J Gen Virol

      Volume: (in press)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Construction of an infectious cDNA clone for Omsk Hemorrhagic fever virus, and characterization of mutations in NS2A and NS5.2010

    • Author(s)
      Yoshii K, Igarashi M, Ito K, Kariwa H, Holbrook MR, Takashima I
    • Journal Title

      Virus Research 155(1)

      Pages: 61-68

    • NAID

      120002834769

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Enzyme-linked immunosorbent assay for the detection of filovirus species-specific antibodies.2010

    • Author(s)
      Nakayama E, Yokoyama A, Miyamoto H, Igarashi M, Kishida N, Matsuno K, Marzi A, Feldmann H, Ito K, Saijo M, Takada A
    • Journal Title

      Clinical and Vaccine Immunology 17(11)

      Pages: 1723-1728

    • NAID

      120002973852

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Transcellular transport of West Nile virus-like particles across human endothelial cells depends on residues 156 and 159 of envelope protein.2010

    • Author(s)
      Hasebe R, Suzuki T, Makino Y, Igarashi M, Yamanouchi S, Maeda A, Horiuchi M, Sawa H, Kimura T
    • Journal Title

      BMC Microbiol. 10(1)

      Pages: 165-165

    • NAID

      120002261736

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] J.Virol.2010

    • Author(s)
      Matsuno K, Kishida N, Usami K, Igarashi M, Yoshida R, Nakayama E, Shimojima M, Feldmann H, Irimura T, Kawaoka Y, Takada A
    • Journal Title

      Different potential of C-type lectin-mediated entry between Marburg virus strains. 84(10)

      Pages: 5140-5147

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] A novel copper(II) coordination at His186 in full-length murine prion protein.2010

    • Author(s)
      Watanabe Y, Hiraoka W, Igarashi M, Ito K, Shimoyama Y, Horiutchi M, Yamamori T, Yasui H, Kuwabara M, Inagaki F, Inanam O
    • Journal Title

      Biochem Biophys Res Commun 394(3)

      Pages: 522-528

    • NAID

      120002148672

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Predicting the Antigenic Structure of the Pandemic (H1N1) 2009 Influenza Virus Hemagglutinin.2010

    • Author(s)
      Igarashi M, Ito K, Yoshida R, Tomabechi D, Kida H, Takada A
    • Journal Title

      PLoS One 5(1)

    • NAID

      120001804925

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Transcellular transport of West Nile virus-like particles across human endothelial cells depends on residues 156 and 159 of envelope protein2010

    • Author(s)
      Hasebe R, Suzuki T, Makino Y, Igarashi M, Yamanouchi S, Maeda A, Horiuchi M, Sawa H, Kimura T
    • Journal Title

      BMC Microbiol

      Volume: 10(1) Pages: 165-165

    • NAID

      120002261736

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Enzyme-linked immunosorbent assay for the detection of filovirus species-specific antibodies2010

    • Author(s)
      Nakayama E, Yokoyama A, Miyamoto H, Igarashi M, Kishida N, Matsuno K, Marzi A, Feldmann H, Ito K, Saijo M, Takada A
    • Journal Title

      Clinical and Vaccine Immunology

      Volume: 17(11) Pages: 1723-1728

    • NAID

      120002973852

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Construction of an infectious cDNA clone for Omsk Hemorrhagic fever virus, and characterization of mutations in NS2A and NS52010

    • Author(s)
      Yoshii K, Igarashi M, Ito K, Kariwa H, Holbrook MR, Takashima I
    • Journal Title

      Virus Research

      Volume: 155(1) Pages: 61-68

    • NAID

      120002834769

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Predicting the Antigenic Structure of the Pandemic(H1N1)2009 Influenza Virus Hemagglutinin2010

    • Author(s)
      Manabu Igarashi, Kimihito Ito, Reiko Yoshida, Daisuke Tomabechi, Hiroshi Kida, Ayato Takada
    • Journal Title

      PLoS One 5(1)

    • NAID

      120001804925

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A novel copper(II)coordination at His186 in full-length murine prion protein2010

    • Author(s)
      Yasuko Watanabe, Wakako Hiraoka, Manabu Igarashi, Kimihito Ito, Yuhei Shimoyama, Motohiro Horiutchi, Tohru Yamamori, Hironobu Yasui, Mikinori Kuwabara, Fuyuhiko Inagaki, Osamu Inanam
    • Journal Title

      Biochem Biophys Res Commun (in press)

    • NAID

      120002148672

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Different potential of C-type lectin-mediated entry between Marburg virus strains2010

    • Author(s)
      Keita Matsuno, Noriko Kishida, Katsuaki Usami, Manabu Igarashi, Reiko Yoshida, Eri Nakayama, Masayuki Shimojima, Heinz Feldmann, Tatsuro Irimura, Yoshihiro Kawaoka, Ayato Takada
    • Journal Title

      J.Virol (in press)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] パンデミックインフルエンザAウイルス(H1N1)ヘマグルチニンに対するモノクローナル抗体の性状解析2010

    • Author(s)
      吉田玲子, 他
    • Organizer
      第58回日本ウイルス学術集会
    • Place of Presentation
      徳島(徳島県郷土文化会館)
    • Year and Date
      2010-10-08
    • Related Report
      2010 Final Research Report
  • [Presentation] フィロウイルス種特異抗体検出ELISA法の開発2010

    • Author(s)
      中山絵里, 他
    • Organizer
      第58回日本ウイルス学術集会
    • Place of Presentation
      徳島(徳島県郷土文化会館)
    • Year and Date
      2010-10-08
    • Related Report
      2010 Annual Research Report 2010 Final Research Report
  • [Presentation] H3N2インフルエンザウイルスHAに付加された糖鎖は周辺エピトープを覆い隠していたか?~糖鎖付加部位周辺アミノ酸残基の多様性変化の解析~2010

    • Author(s)
      五十嵐学, 他
    • Organizer
      第58回日本ウイルス学術集会
    • Place of Presentation
      徳島(徳島県郷土文化会館)
    • Year and Date
      2010-10-08
    • Related Report
      2010 Annual Research Report 2010 Final Research Report
  • [Presentation] パンデミックインフルエンザA ウイルス(H1N1)ヘマグルチニンに対するモノクローナル抗体の性状解析2010

    • Author(s)
      吉田玲子、苫米地大輔、五十嵐学、宮本洋子、加瀬哲男、喜田宏、高田礼人
    • Organizer
      第58回日本ウイルス学術集会
    • Place of Presentation
      徳島(徳島県郷土文化会館)
    • Year and Date
      2010-10-08
    • Related Report
      2010 Annual Research Report
  • [Presentation] Prediction of the Antigenic Change of the Pandemic (H1N1) 2009 Influenza Virus Hemagglutinin2010

    • Author(s)
      Igarashi M, 他
    • Organizer
      Options for the Control of Influenza VII
    • Place of Presentation
      China (Hong Kong SAR)
    • Year and Date
      2010-09-06
    • Related Report
      2010 Annual Research Report 2010 Final Research Report
  • [Presentation] Prediction of Antigenic Structure of Hemagglutinin of Pandemic (H1N1) 2009 Influenza Virus2010

    • Author(s)
      Ito K, 他
    • Organizer
      14th International Negative Strand Virus Meeting
    • Place of Presentation
      Belgium (Bruges)
    • Year and Date
      2010-06-23
    • Related Report
      2010 Annual Research Report 2010 Final Research Report
  • [Presentation] インフルエンザウイルスの抗原変異予測と亜型間交差感染防御2010

    • Author(s)
      高田礼人, 他
    • Organizer
      日本薬学会第130年会
    • Place of Presentation
      岡山(就実大学)
    • Year and Date
      2010-03-28
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Presentation] ホモロジーモデリング法による新型H1N1インフルエンザウイルスのヘマグルチニンの抗原構造の解析2009

    • Author(s)
      五十嵐学, 他
    • Organizer
      第57回日本ウイルス学会学術集会
    • Place of Presentation
      東京(都市センターホテル)
    • Year and Date
      2009-10-26
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Presentation] インフルエンザウイルスのヘマグルチニンのMDS解析と変異予測への応用2009

    • Author(s)
      伊藤公人, 他
    • Organizer
      第57回日本ウイルス学会学術集会
    • Place of Presentation
      東京(都市センターホテル)
    • Year and Date
      2009-10-26
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Presentation] 愛知県でウズラから分離されたH7N6亜型鳥インフルエンザウイルスの遺伝子解析2009

    • Author(s)
      内田裕子, 他
    • Organizer
      第57回日本ウイルス学会学術集会
    • Place of Presentation
      東京(都市センターホテル)
    • Year and Date
      2009-10-26
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Presentation] MGL/CD301を介するエボラウイルス感染増強に関わる表層糖蛋白質の構造的特徴2009

    • Author(s)
      宇佐美克明, 他
    • Organizer
      第82回日本生化学会大会
    • Place of Presentation
      神戸(ポートアイランド)
    • Year and Date
      2009-10-24
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Presentation] マウスプリオンタンパク質ヒスチジン186周辺の銅イオン結合部位に関する構造解析2009

    • Author(s)
      稲波修, 他
    • Organizer
      第148回日本獣医学会学術集会
    • Place of Presentation
      鳥取(とりぎん文化会館)
    • Year and Date
      2009-09-25
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Presentation] インフルエンザウイルスのヘマグルチニンの進化解析と変異予測への応用2009

    • Author(s)
      伊藤公人, 他
    • Organizer
      第11回日本進化学会大会
    • Place of Presentation
      札幌(北海道大学)
    • Year and Date
      2009-09-03
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Presentation] インフルエンザウイルスヘマグルチニンの糖鎖付加ポテンシャルの予測2009

    • Author(s)
      五十嵐学, 他
    • Organizer
      第23回インフルエンザ研究者交流の会シンポジウム
    • Place of Presentation
      東京(東京大学医科学研究所)
    • Year and Date
      2009-07-03
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Presentation] インフルエンザウイルスHA亜型間交差中和活性を有するモノクローナル抗体2009

    • Author(s)
      吉田玲子, 他
    • Organizer
      第23回インフルエンザ研究者交流の会シンポジウム
    • Place of Presentation
      東京(東京大学医科学研究所)
    • Year and Date
      2009-07-03
    • Related Report
      2010 Final Research Report 2009 Annual Research Report

URL: 

Published: 2009-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi