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Functional analysis of small open reading frame in plants

Research Project

Project/Area Number 21780315
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Applied molecular and cellular biology
Research InstitutionThe Institute of Physical and Chemical Research

Principal Investigator

HIGUCHI Mieko  独立行政法人理化学研究所, 植物ゲノム機能研究グループ, 特別研究員 (40443014)

Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2011: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2010: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
Fiscal Year 2009: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Keywordsshort open reading frames / マイクロアレイ / シロイヌナズナ / 光誘導性遺伝子 / イネ / short open reading frame / 光誘導生 / 過剰発現体
Research Abstract

To investigate function of sORFs in plants, I developed custom microarrays including sORFs and annotated genes in Arabidopsis to analyze gene expression profile. Microarray analysis was carried out in various tissue types. The expression of sORFs could be detected in various plant tissues. Full length cDNA of sORF was verified by RACE experiment. Next, promoter region and sORF without stop codon was fused to GUS gene and then expressed it in Arabidopsis. GUS signal was detected in transgenic plants, indicating that sORF was actually translated in plants. I selected sORFs based on expression, conservation, peptide hormone-like sequence to generate sORF overexpression Arabidopsis plants. Some overexpression plants showed visible phenotypes. Thus, I conclude that sORFs have roles in growth and developmental processes.

Report

(4 results)
  • 2011 Annual Research Report   Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (25 results)

All 2013 2012 2011 2010 2009

All Journal Article (3 results) (of which Peer Reviewed: 2 results) Presentation (14 results) Book (8 results)

  • [Journal Article] Functional analysis of two isoforms of leaf-type ferredoxin-NADP+-oxidoreductase in rice using heterologous expression system of Arabidopsis thaliana2011

    • Author(s)
      Higuchi-Takeuchi M, Ichikawa T, Kondou Y, Matsui K, Hasegawa Y, Kawashima M, Sonoike K, Mori M, Hirochika H, Matsui M.
    • Journal Title

      Plant Physiol

      Volume: 157 Pages: 96-108

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] High-throughput characterization of plant gene functions by using gain-of-function technology2010

    • Author(s)
      Kondou Y, Higuchi M(Co-first author), Matsui M.
    • Journal Title

      Annual Review of Plant Biology

      Volume: 61 Pages: 373-393

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] High-Throughput Characterization of Plant Gene Functions by using Gain-of-Function Technology2010

    • Author(s)
      樋口美栄子
    • Journal Title

      The Annual Review of Plant Biology 61(In press)

    • Related Report
      2009 Annual Research Report
  • [Presentation] 環境ストレス耐性に関与するペプチドの探索2012

    • Author(s)
      中南健太郎, 岡本昌憲, 樋口美栄子, 吉積毅, 清水みなみ, 大橋千広, 田中真帆, 松井南, 篠崎一雄, 関原明, 花田耕介
    • Organizer
      日本植物生理学会
    • Place of Presentation
      京都産業大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] 遺伝子間隙に存在するshort open reading frameの機能解析2011

    • Author(s)
      樋口美栄子、吉積毅、花田耕介、児玉豊、清水みなみ、堀井陽子、川島美香、松井敬子、松井南
    • Organizer
      第52回植物生理学会
    • Place of Presentation
      仙台
    • Year and Date
      2011-03-20
    • Related Report
      2011 Final Research Report
  • [Presentation] 遺伝子間隙に存在するshort open reading frameの機能解析2011

    • Author(s)
      樋口美栄子、吉積毅、花田耕介、児玉豊、清水みなみ、堀井陽子、川島美香、松井敬子、松井南
    • Organizer
      第52回植物生理学会
    • Place of Presentation
      仙台市
    • Year and Date
      2011-03-20
    • Related Report
      2010 Annual Research Report
  • [Presentation] Functional analysis of short open reading frames (sORFs) in plants2010

    • Author(s)
      樋口美栄子、花田耕介、吉積毅、堀井陽子、川島美香、松井敬子、清水みなみ、松井南
    • Organizer
      第33回日本分子生物学会
    • Place of Presentation
      神戸市
    • Year and Date
      2010-12-08
    • Related Report
      2010 Annual Research Report
  • [Presentation] Functional analysis of short open reading frames(sORFs) in plants2010

    • Author(s)
      樋口美栄子、花田耕介、吉積毅、堀井陽子、川島美香、松井敬子、清水みなみ、松井南
    • Organizer
      第33回日本分子生物学会
    • Place of Presentation
      横浜
    • Year and Date
      2010-12-07
    • Related Report
      2011 Final Research Report
  • [Presentation] Novel small open reading frames which regulate plant immunity2010

    • Author(s)
      Rebecca Lyons, Kousuke Hanada, Mieko Higuchi, Minami Matsui and Ken Shirasu
    • Organizer
      Plant Science Communications
    • Place of Presentation
      Okazaki Japan
    • Year and Date
      2010-11-16
    • Related Report
      2011 Final Research Report
  • [Presentation] Japanese resource project on Arabidopsis-outlines and introduction of FOX lines.2010

    • Author(s)
      Kobayashi M, Kondou Y, Higuchi M, Ichikawa T, Matsui M
    • Organizer
      21st International Congress on Arabidopsis Research
    • Place of Presentation
      横浜市
    • Year and Date
      2010-06-09
    • Related Report
      2010 Annual Research Report
  • [Presentation] Functional analysis of short open reading frames (sORFs) in plants2010

    • Author(s)
      Mieko Higuchi, Yoko Horii, Mika Kawashima, Keiko Matsui, Kousuke Hanada, Minami Matsui
    • Organizer
      21st International Congress on Arabidopsis Research
    • Place of Presentation
      横浜市
    • Year and Date
      2010-06-08
    • Related Report
      2010 Annual Research Report
  • [Presentation] Functional analysis of short open reading frames(sORFs) in plants2010

    • Author(s)
      Mieko Higuchi, Yoko Horii, Mika Kawashima, Keiko Matsui, Kousuke Hanada, Minami Matsui
    • Organizer
      21st International Congress on Arabidopsis Research
    • Place of Presentation
      Yokohama
    • Year and Date
      2010-06-06
    • Related Report
      2011 Final Research Report
  • [Presentation] Japanese resource project on Arabidopsis-outlines and introduction of FOX lines2010

    • Author(s)
      Kobayashi M, Kondou Y, Higuchi M, Ichikawa T, Matsui M
    • Organizer
      21st International Congress on Arabidopsis Research
    • Place of Presentation
      Yokohama
    • Year and Date
      2010-06-06
    • Related Report
      2011 Final Research Report
  • [Presentation] Flagellin-triggered induction of novel small open reading frames2010

    • Author(s)
      Rebecca Lyons, Kousuke Hanada, Mieko Higuchi, Minami Matsui and Ken Shirasu
    • Organizer
      21st International Conference on Arabidopsis Research
    • Place of Presentation
      Yokohama
    • Year and Date
      2010-06-06
    • Related Report
      2011 Final Research Report
  • [Presentation] 既知遺伝子間隙に存在するshort open reading frames(sORFs)の機能解析2010

    • Author(s)
      堀井陽子、樋口美栄子、近藤陽一、松井敬子、川島美香、加藤茉紗美、眞鍋勝司、花田耕介、松井南
    • Organizer
      第51回植物生理学会
    • Place of Presentation
      熊本
    • Year and Date
      2010-03-18
    • Related Report
      2011 Final Research Report
  • [Presentation] Expression analysis of short open reading frames(sORFs)in Arabidopsis by custom microarray2009

    • Author(s)
      樋口美栄子
    • Organizer
      19^<th> International Conference on Arabidopsis Research
    • Place of Presentation
      イギリス、エジンバラ
    • Year and Date
      2009-07-23
    • Related Report
      2009 Annual Research Report
  • [Presentation] Expression analysis of short open reading frames(sORFs) in Arabidopsis by custom microarray2009

    • Author(s)
      Higuchi M, Hanada K, Kondou Y, Sakai T, Horii Y, Kawashima M, Matsui M.
    • Organizer
      20th International Conference on Arabidopsis Research
    • Place of Presentation
      Edinburgh
    • Year and Date
      2009-06-30
    • Related Report
      2011 Final Research Report
  • [Book] Screening for gene function using the FOX(Full-length cDNA OvereXpressor gene) hunting system. Methods in Molecular Biology2013

    • Author(s)
      Higuchi M, Matsui M.
    • Publisher
      The Humana Press
    • Related Report
      2011 Final Research Report
  • [Book] Characterization of rice genes using heterologous full-length cDNA expression system. Methods in Molecular Biology2012

    • Author(s)
      Higuchi M, Kondou Y, Mori M, Ichikawa T, Matsui M.
    • Publisher
      The Humana Press
    • Related Report
      2011 Final Research Report
  • [Book] Application of full-length cDNA resources to gain-of-function technology for characterization of plant gene function. cDNA libraries, Methods in Molecular Biology2011

    • Author(s)
      Kondou Y, Higuchi M, Ichikawa T, Matsui M.
    • Publisher
      The Humana Press
    • Related Report
      2011 Final Research Report
  • [Book] Application of full-length cDNA resources to gain-of-function technology for characterization of plant gene function. cDNA libraries, Methods in Molecular Biology2011

    • Author(s)
      Kondou Y, Higuchi M, Ichikawa T, Matsui M
    • Publisher
      The Humana Press Inc
    • Related Report
      2011 Annual Research Report
  • [Book] Characterization of rice genes using heterologous full-length cDNA expression system. Methods in Molecular Biology2011

    • Author(s)
      Higuchi M, Kondou Y, Mori M, Ichikawa T, Matsui M
    • Publisher
      The Humana Press Inc
    • Related Report
      2011 Annual Research Report
  • [Book] Full-length cDNA overexpressor gene hunting system(FOX hunting system), Plant Reverse Genetics, Methods in Molecular Biology2010

    • Author(s)
      Higuchi M, Kondou Y, Ichikawa T, Matsui M.
    • Publisher
      The Humana Press
    • Related Report
      2011 Final Research Report
  • [Book] cDNA libraries Methods in Molecular Biology2010

    • Author(s)
      Kondou Y, Higuchi M, Ichikawa T, Matsui M
    • Total Pages
      13
    • Publisher
      The Humana Press Inc.
    • Related Report
      2010 Annual Research Report
  • [Book] Plant Reverse Genetics, Methods in Molecular Biology, Edited by Pereira A, The Humana Press Inc2010

    • Author(s)
      近藤陽一、樋口美栄子、松井南
    • Publisher
      Application of full-length cDNA resources to gain-of-function technology for characterization of plant gene functions(In press)
    • Related Report
      2009 Annual Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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