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Analysis of mechanisms of ERK MAP kinase phosphorylation

Research Project

Project/Area Number 21790273
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field General medical chemistry
Research InstitutionKyoto University

Principal Investigator

AOKI Kazuhiro  京都大学, 大学院・生命科学研究科, 講師 (80511427)

Project Period (FY) 2009 – 2011
Project Status Completed (Fiscal Year 2011)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2010: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
Fiscal Year 2009: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
KeywordsFRET / イメージング / シグナル伝達 / システム生物学 / 癌 / ERK / シミュレーション / リン酸化 / パラメーター
Research Abstract

ERK MAP kinase is essential for cell proliferation, differentiation and tumorigenetsis. We analyzed molecular mechanisms of ERK phosphorylation by using imaging and computer simulation. Approximately 30 kinetic parameters were measured by experiments. Based on these empirical parameters, we built a simulation model, and found that ERK was processively, but not distributively, phosphorylated by MEK.

Report

(3 results)
  • 2011 Final Research Report ( PDF )
  • 2010 Annual Research Report
  • 2009 Annual Research Report
  • Research Products

    (31 results)

All 2012 2011 2010 2009 Other

All Journal Article (12 results) (of which Peer Reviewed: 7 results) Presentation (17 results) Remarks (2 results)

  • [Journal Article] Development of an optimized backbone of FRET biosensors for kinases and GTPases2011

    • Author(s)
      Komatsu N, Aoki K, Yamada M, Yukinaga H, Fujita Y, Kamioka Y, Matsuda M
    • Journal Title

      Molecular Biology of the Cell

      Volume: 22 Issue: 23 Pages: 4647-4656

    • DOI

      10.1091/mbc.e11-01-0072

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Processive phosphorylation of ERK MAP kinase in mamalian cells2011

    • Author(s)
      K.Aoki, M.Yamada, K.Kunida, S.Yasuda, M.Matsuda
    • Journal Title

      Proc.Natl.Acad.Sci.USA

      Volume: 108 Issue: 31 Pages: 12675-12680

    • DOI

      10.1073/pnas.1104030108

    • Related Report
      2011 Final Research Report
    • Peer Reviewed
  • [Journal Article] Spatiotemporal regulation of small GTPases as revealed by probes based on the principle of Forster Resonance Energy Transfer (FRET): Implications for signaling and pharmacology2011

    • Author(s)
      Kiyokawa E, Aoki K, Nakamura T, Matsuda M.
    • Journal Title

      Annu. Rev. Pharmacol. Toxicol.

      Volume: 51 Issue: 1 Pages: 337-58

    • DOI

      10.1146/annurev-pharmtox-010510-100234

    • Related Report
      2011 Final Research Report
  • [Journal Article] Development of an optimized backbone of FRET biosensors for kinases and GTPases2011

    • Author(s)
      Komatsu N, Aoki K, Yamada M, Yukinaga H, Fujita Y, Kamioka Y, Matsuda M
    • Journal Title

      Molecular Biology of the Cell

      Volume: 22 Pages: 4647-4656

    • NAID

      120003644367

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Processive phosphorylation of ERK MAP kinase in mammalian cells2011

    • Author(s)
      Aoki K, Yamada M, Kunida K, Yasuda S, Matsuda M
    • Journal Title

      Proceedings of the National Academy of Sciences

      Volume: 108 Pages: 12675-12680

    • NAID

      120003204017

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Multiple decisive phosphorylation sites for the negative feedback regulation of SOS1 via ERK2010

    • Author(s)
      Kamioka Y, Yasuda S, Fujita Y, Aoki K, Matsuda M.
    • Journal Title

      J. Biol. Chem.

      Volume: 285 Issue: 43 Pages: 33540-33548

    • DOI

      10.1074/jbc.m110.135517

    • Related Report
      2011 Final Research Report
  • [Journal Article] Calcium Signaling Pathways Converge at Raf1 via the Shoc2 Scaffold Protein2010

    • Author(s)
      Yoshiki S, Udagawa R, Aoki K, Kamioka Y, Kiyokawa E, Matsuda M. Ras
    • Journal Title

      Mol. Biol. Cell

      Volume: 21 Issue: 6 Pages: 1088-96

    • DOI

      10.1091/mbc.e09-06-0455

    • Related Report
      2011 Final Research Report
  • [Journal Article] The Scaffold Protein Shoc2/SUR-8 Accelerates the Interaction of Ras and Raf2010

    • Author(s)
      Matsunaga-Udagawa R, Fujita Y, Yoshiki S, Terai K, Kamioka Y, Kiyokawa E, Yugi K, Aoki K, Matsuda M.
    • Journal Title

      J. Biol. Chem.

      Volume: 285 Issue: 10 Pages: 7818-26

    • DOI

      10.1074/jbc.m109.053975

    • Related Report
      2011 Final Research Report
  • [Journal Article] Signaling Pathways Converge at Raf1 via the Shoc2 Scaffold Protein.2010

    • Author(s)
      Yoshiki S, Udagawa R, Aoki K, Kamioka Y, Kiyokawa E, Matsuda M
    • Journal Title

      Molecular Biology of the Cell 21

      Pages: 1088-1096

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The Scaffold Protein Shoc2/SUR-8 Accelerates the Interaction of Ras and Raf.2010

    • Author(s)
      Matsunaga-Udagawa R, Fujita Y, Yoshiki S, Terai K, Kamioka Y, Kiyokawa E, Yugi K, ^*Aoki K, Matsuda M.
    • Journal Title

      The Journal of Biological Chemistry 285

      Pages: 7818-7826

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Visualization of small GTPase activity with fluorescence resonance energy transfer-based biosensors2009

    • Author(s)
      Aoki K, Matsuda M.
    • Journal Title

      Nature Protoc.

      Volume: 7 Issue: 11 Pages: 1623-31

    • DOI

      10.1038/nprot.2009.175

    • Related Report
      2011 Final Research Report
  • [Journal Article] Visualization of small GTPase activity with fluorescence resonance energy transfer-based biosensors.2009

    • Author(s)
      Aoki K, Matsuda M.
    • Journal Title

      Nature Protocols 4

      Pages: 1623-1631

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] 分子混み合いの反応速度論的展開と実証2012

    • Author(s)
      青木一洋
    • Organizer
      定量生物の会第四回年会
    • Place of Presentation
      名古屋
    • Year and Date
      2012-01-10
    • Related Report
      2011 Final Research Report
  • [Presentation] 分子混み合いの反応速度論的展開と実証2012

    • Author(s)
      青木一洋
    • Organizer
      定量生物の会第四回年会
    • Place of Presentation
      名古屋(招待講演)
    • Year and Date
      2012-01-10
    • Related Report
      2010 Annual Research Report
  • [Presentation] RETイメージングを用いたERKによる細胞増殖制御機構の解析2011

    • Author(s)
      青木一洋、松田道行
    • Organizer
      第84回日本生化学会大会
    • Place of Presentation
      東京
    • Year and Date
      2011-09-21
    • Related Report
      2011 Final Research Report
  • [Presentation] 実測パラメーターに基づく細胞内シグナル伝達系の定量的シミュレーション2011

    • Author(s)
      青木一洋
    • Organizer
      第6回トランスポーター研究会
    • Place of Presentation
      宮城県仙台市
    • Year and Date
      2011-06-11
    • Related Report
      2011 Final Research Report
  • [Presentation] 実測パラメーターに基づく細胞内シグナル伝達系の定量的シミュレーション2011

    • Author(s)
      青木一洋
    • Organizer
      第6回トランスポーター研究会
    • Place of Presentation
      宮城県仙台市(招待講演)
    • Year and Date
      2011-06-11
    • Related Report
      2010 Annual Research Report
  • [Presentation] 定量的な細胞シグナル伝達モデルの構築にむけて2011

    • Author(s)
      青木一洋
    • Organizer
      細胞システムの動態と論理
    • Place of Presentation
      埼玉県和光市(招待講演)
    • Year and Date
      2011-05-24
    • Related Report
      2010 Annual Research Report
  • [Presentation] がんの制御に向けたシステム的なアプローチ2011

    • Author(s)
      青木一洋
    • Organizer
      日本のライフ研究開発を元気にする「夢」と「攻め」-バイオ研究と計算・情報科学の次世代型融合を探る-公開シンポジウム
    • Place of Presentation
      神戸
    • Year and Date
      2011-01-22
    • Related Report
      2011 Final Research Report
  • [Presentation] FRET imaging revealed a functional link between frequency of ERK oscillation and growth control by cell density2011

    • Author(s)
      Aoki K, and Matsuda M
    • Organizer
      The 12th International Conference on Systems Biology
    • Place of Presentation
      Heidelberg/Mannheim, Germany
    • Related Report
      2011 Final Research Report
  • [Presentation] 分子混み合いを加味した反応速度論モデルの構築と実証2011

    • Author(s)
      青木一洋
    • Organizer
      定量生物の会第三回年会
    • Place of Presentation
      東京
    • Related Report
      2011 Final Research Report
  • [Presentation] MAPKシグナル伝達系の定量的数理モデル構築2010

    • Author(s)
      青木一洋、松田道行
    • Organizer
      定量生物の会 第二回年会
    • Place of Presentation
      大阪大学(大阪府)
    • Year and Date
      2010-01-10
    • Related Report
      2009 Annual Research Report
  • [Presentation] Quantitative kinetic analysis revealed processive phosphorylation of ERK MAP kinase in mammalian cells2010

    • Author(s)
      Kazuhiro Aoki, and Michiyuki Matsuda
    • Organizer
      第33回日本分子生物学会年会第82回日本生化学会大会合同大会
    • Place of Presentation
      神戸
    • Related Report
      2011 Final Research Report
  • [Presentation] 細胞内シグナル伝達系のフィードバック制御による細胞の形態形成機構2009

    • Author(s)
      青木一洋、国田勝行、松田道行
    • Organizer
      第82回日本生化学会大会
    • Place of Presentation
      神戸
    • Year and Date
      2009-10-24
    • Related Report
      2011 Final Research Report
  • [Presentation] 細胞内シグナル伝達系のフィードバック制御による細胞の形態形成機構2009

    • Author(s)
      青木一洋、国田勝行、松田道行
    • Organizer
      第82回日本生化学会大会
    • Place of Presentation
      神戸ポートアイランド(兵庫県)
    • Year and Date
      2009-10-24
    • Related Report
      2009 Annual Research Report
  • [Presentation] Spatio-temporal Regulation of Ras activity by a scaffold protein.2009

    • Author(s)
      Aoki K, Matsunaga-Udagawa R, Fujita Y, Yoshiki S, Terai K, Kamioka Y, Kiyokawa K, Matsuda M
    • Organizer
      第61回日本細胞生物学会大会
    • Place of Presentation
      名古屋国際会議場(愛知県)
    • Year and Date
      2009-06-04
    • Related Report
      2009 Annual Research Report
  • [Presentation] Evidence that ERK is processively phosphorylated in mammalian cells2009

    • Author(s)
      Aoki K, Yamada M, Kunida K, and Matsuda M
    • Organizer
      The 10th International Conference on Systems Biology
    • Place of Presentation
      Stanford, California
    • Related Report
      2011 Final Research Report
  • [Presentation] Evidence that ERK is processively phosphorylated in mammalian cells.2009

    • Author(s)
      Aoki K, Yamada M, Kunida K, Matsuda M
    • Organizer
      The 10th International Conference on Systems Biology
    • Place of Presentation
      Stanford University, California, USA
    • Related Report
      2009 Annual Research Report
  • [Presentation] FRET imaging reveals a functional link between cell growth and oscillation frequency of ERK activity

    • Author(s)
      Kazuhiro Aoki
    • Organizer
      Molecular Imaging and Systems Biology
    • Place of Presentation
      Tokyo, Japan
    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://researchmap.jp/kazuhiro_aoki/

    • Related Report
      2011 Final Research Report
  • [Remarks]

    • URL

      http://www.kyoto-u.ac.jp/ja/news_data/h/h1/news6/2011/110719_1.htm

    • Related Report
      2010 Annual Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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