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Analysis of mRNP complex using gene knockin in mammalian cells

Research Project

Project/Area Number 21790289
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field General medical chemistry
Research InstitutionYokohama City University

Principal Investigator

YAMASHITA Akio  Yokohama City University, 医学研究科, 講師 (20405020)

Project Period (FY) 2009 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2010: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2009: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywords細胞医化学 / 遺伝情報複製 / 転写装置 / 再編 / 制御
Research Abstract

I cloned genomic regions of VEGF, IL6, IL5, IFNbeta and IFNgamma. I constructed IFNbeta gene knockin vector for the insertion of BoxB sequence at downstream of termination codon. Next, I generate cell lines (HeLa TetOff, HeLaTetOnAdvanced, HCT116、BEAS-2B TetOff) which containing a single FRT recombination site. I also constructed the pTRE-Tight-FRT IL-6, IFNbeta, IL28B, and IL-5 full length genes.

Report

(3 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • Research Products

    (45 results)

All 2011 2010 2009 Other

All Journal Article (16 results) (of which Peer Reviewed: 7 results) Presentation (18 results) Book (4 results) Remarks (7 results)

  • [Journal Article] Nonsense-Mediated mRNA Decay SMG-1 kinase is regulated by large-scale conformational changes controlled by SMG-8.2011

    • Author(s)
      Arias-Palomo E, Yamashita A (co-first author), Fernandez IS, Nunez-Ramirez R, Bamba Y, Izumi N, Ohno S, Llorca S
    • Journal Title

      Genes and Development.Genes Dev. 25(2)

      Pages: 153-164

    • Related Report
      2010 Final Research Report
  • [Journal Article] Methylmercury-induced relative selenium deficiency causese oxidative stress through its post-transcriptional effect.2011

    • Author(s)
      Usuki F, Yamashita A, Fujimura M
    • Journal Title

      J Biol Chem. 286(8)

      Pages: 6641-6649

    • Related Report
      2010 Final Research Report
  • [Journal Article] Characterization of SMG-9, an essential component of the nonsense-mediated mRNA decay SMG1C complex.2011

    • Author(s)
      Fernandez1 SI, Yamashita A (co-first author), Arias-Palomo E, Bamba Y, Bartolome RA, Canales MA, Teixido J, Ohno S, Llorca O
    • Journal Title

      Nucleic acid research. 39(1)

      Pages: 347-358

    • Related Report
      2010 Final Research Report
  • [Journal Article] Nonsense-Mediated mRNA Decay SMG-1 kinase is regulated by large-scale conformational changes controlled by SMG-8.2011

    • Author(s)
      Arias-Palomo E, Yamashita A (co-first author), Fernandez IS, Nunez-Ramirez R, Bamba Y, Izumi N, Ohno S, Llorca S
    • Journal Title

      Genes and Development

      Volume: 25 Pages: 153-164

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Methylmercury-induced relative selenium deficiency causese oxidative stress through its post-transcriptional effect.2011

    • Author(s)
      Usuki F, Yamashita A, Fujimura M
    • Journal Title

      Journal of biological chemistry

      Volume: 286 Pages: 6641-6649

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Characterization of SMG-9, an essential component of the nonsense-mediated mRNA decay SMG1C complex.2011

    • Author(s)
      Fernandezl SI, Yamashita A (co-first author), Arias-Palomo E, Bamba Y, Bartolome RA, Canales MA, Teixido J, Ohno S, Llorca O
    • Journal Title

      Nucleic acid research

      Volume: 39 Pages: 347-358

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ASPP2 regulates epithelial cell polarity through the PAR complex.2010

    • Author(s)
      Cong W, Hirose T, Harita Y, Yamashita A, Mizuno K, Hirano H, Ohno S
    • Journal Title

      Curr Biol. 20(15)

      Pages: 1408-1414

    • Related Report
      2010 Final Research Report
  • [Journal Article] AAA+ family ATPases, RUVBL1 and RUVBL2, coordinate PIKK family and play critical roles in Nonsense-mediated mRNA decay.2010

    • Author(s)
      Izumi N, Yamashita A (corresponding author), Iwamatsu A, Kurata R, Nakamura H, Saari B, Hirano H, Anderson P, Ohno S
    • Journal Title

      Science signaling (Science姉妹誌). (3)

      Pages: 27-27

    • Related Report
      2010 Final Research Report
  • [Journal Article] Analysis of Nonsense-mediated mRNA decay by the monitoring of mRNA half lives in mammalian cells.2010

    • Author(s)
      Yamashita A (corresponding author), Ohno S.
    • Journal Title

      CSH protocol. (2)

      Pages: 5386-5386

    • Related Report
      2010 Final Research Report
  • [Journal Article] ASPP2 regulates epithelial cell polarity through the PAR complex.2010

    • Author(s)
      Cong W, Hirose T, Harita Y, Yamashita A, Mizuno K, Hirano H, Ohno S
    • Journal Title

      Current biology

      Volume: 20 Pages: 1408-1414

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] AAA+ proteins RUVBL1 and RUVBL2 coordinate PIKK activity and function in nonsense-mediated mRNA decay.2010

    • Author(s)
      Izumi N, Yamashita A (Corresponding Author), Iwamatsu A, Kurata R, Nakamura H, Saari B, Hirano H, Anderson P, Ohno S.
    • Journal Title

      Science signaling 3

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Analysis of Nonsense-mediated mRNA decay by the monitoring of mRNA half lives in mammalian cells.2010

    • Author(s)
      Yamashita A (Corresponding Author), Ohno S
    • Journal Title

      CSH protocol 2(pdb.prot)

      Pages: 5386-5386

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] NMDと疾患2010

    • Author(s)
      臼杵扶佐子, 山下暁朗
    • Journal Title

      細胞工学 29

      Pages: 155-160

    • Related Report
      2009 Annual Research Report
  • [Journal Article] SMG-8 and SMG-9, two novel subunits of the SMG-1 complex, regulate remodeling of the mRNA surveillance complex during nonsense-mediated mRNA decay.2009

    • Author(s)
      Yamashita A (corresponding author), Izumi N, Kashima I, Ohnishi T, Saari B, Katsuhata Y, Muramatsu R, Morita T, Iwamatsu A, Kurata R, Hachiya T, Hirano H, Anderson P, Ohno S.
    • Journal Title

      Genes and Development. 23(9)

      Pages: 1091-1105

    • Related Report
      2010 Final Research Report
  • [Journal Article] SMG-8 and SMG-9, two novel subunits of the SMG-1 complex, regulate remodeling of the mRNA surveillance complex during nonsense-mediated mRNA decay.2009

    • Author(s)
      Yamashita A (Corresponding Author), Izumi N, Kashima I, Ohnishi T, Saari B, Katsuhata Y, Muramatsu R, Morita T, Iwamatsu A, Kurata R, Hachiya T, Hirano H, Anderson P, Ohno S
    • Journal Title

      Genes and development 23

      Pages: 1091-1105

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] mRNA品質管理システムと疾患2009

    • Author(s)
      山下暁朗, 臼杵扶佐子
    • Journal Title

      タンパク質核酸酵素 54

      Pages: 2219-2225

    • Related Report
      2009 Annual Research Report
  • [Presentation] 微量RNAからの次世代シークエンサーライブラリー構築法の改善2010

    • Author(s)
      馬場しほ、山下暁朗、大野茂男
    • Organizer
      BMB2010
    • Place of Presentation
      神戸、ポートアイランド
    • Year and Date
      2010-12-10
    • Related Report
      2010 Annual Research Report
  • [Presentation] mRNA監視機構制御因子SMG-1の構造と生理機能2010

    • Author(s)
      山下暁朗
    • Organizer
      BMB2010
    • Place of Presentation
      神戸、ポートアイランド
    • Year and Date
      2010-12-08
    • Related Report
      2010 Annual Research Report
  • [Presentation] IL-6遺伝子発現におけるmRNA転写後制御機構の解析2010

    • Author(s)
      安部開人、山下暁朗、馬場しほ、岡田一平、石上友章、梁明秀
    • Organizer
      BMB2010
    • Place of Presentation
      神戸、ポートアイランド
    • Year and Date
      2010-12-07
    • Related Report
      2010 Annual Research Report
  • [Presentation] mRNA監視機構と疾患2010

    • Author(s)
      山下暁朗
    • Organizer
      日本環境変異原学会第39回大会
    • Place of Presentation
      筑波、つくば国際会議場(招待講演)
    • Year and Date
      2010-11-17
    • Related Report
      2010 Annual Research Report
  • [Presentation] HSP90 regulates PIKK family together with the conserved protein complexes.2010

    • Author(s)
      山下暁朗、泉奈津子、大野茂男
    • Organizer
      Cold spring harbor laboratory meeting translational control
    • Place of Presentation
      New York, USA
    • Year and Date
      2010-09-15
    • Related Report
      2010 Annual Research Report
  • [Presentation] RUVBL1/RUVBL2複合体によるNMD制御2010

    • Author(s)
      山下暁朗、泉奈津子、岩松明彦、平野久、大野茂男
    • Organizer
      第12回日本RNA学会年会
    • Place of Presentation
      東京、一橋記念講堂
    • Year and Date
      2010-07-27
    • Related Report
      2010 Annual Research Report
  • [Presentation] RNAポリメラーゼサブニットRPB5はNMDに関与する2010

    • Author(s)
      泉奈津子、山下暁朗、倉田理恵、平野久、大野茂男
    • Organizer
      第12回日本RNA学会年会
    • Place of Presentation
      東京、一橋記念講堂
    • Year and Date
      2010-07-27
    • Related Report
      2010 Annual Research Report
  • [Presentation] mRNA監視機構制御因子SMG-1の構造と生理機能.2010

    • Author(s)
      山下暁朗.
    • Organizer
      BMB2010.
    • Related Report
      2010 Final Research Report
  • [Presentation] IL-6遺伝子発現におけるmRNA転写後制御機構の解析.2010

    • Author(s)
      安部開人、山下暁朗、馬場しほ、岡田一平、石上友章、梁明秀.
    • Organizer
      BMB2010.
    • Related Report
      2010 Final Research Report
  • [Presentation] 微量RNAからの次世代シークエンサーライブラリー構築法の改善.2010

    • Author(s)
      馬場しほ、山下暁朗、大野茂男.
    • Organizer
      BMB2010.
    • Related Report
      2010 Final Research Report
  • [Presentation] mRNA監視機構と疾患.2010

    • Author(s)
      山下暁朗.
    • Organizer
      日本環境変異原学会第39回大会
    • Place of Presentation
      (招待講演)
    • Related Report
      2010 Final Research Report
  • [Presentation] HSP90 regulates PIKK family together with the conserved protein complexes.2010

    • Author(s)
      Yamashita A, Izumi N, Ohno S.
    • Organizer
      Cold spring harbor laboratory meeting 2010 translational control.
    • Related Report
      2010 Final Research Report
  • [Presentation] RUVBL1/RUVBL2複合体によるNMD制御.2010

    • Author(s)
      山下暁朗、泉奈津子、岩松明彦、平野久、大野茂男.
    • Organizer
      第12回日本RNA学会年会.第12回日本RNA学会年会.
    • Related Report
      2010 Final Research Report
  • [Presentation] RNAポリメラーゼサブニットRPB5はNMDに関与する.2010

    • Author(s)
      泉奈津子、山下暁朗、倉田理恵、平野久、大野茂男.
    • Organizer
      第12回日本RNA学会年会.第12回日本RNA学会年会.
    • Related Report
      2010 Final Research Report
  • [Presentation] THE REMODELING OF MRNA SURVEILLANCE COMPLEX DURING NONSENSE-MEDIATED MRNA DECAY2009

    • Author(s)
      Yamashita A, Izumi N, Okada-Katsuhata Y, Kutsuzawa K, Muramatsu R, Sarri B, Iwamatsu A, Hirano H, Hirahata F, Anderson P, Ohno S.
    • Organizer
      Cold spring harbor laboratory meeting 2009mRNA processing
    • Place of Presentation
      New York。 USA
    • Year and Date
      2009-08-20
    • Related Report
      2009 Annual Research Report
  • [Presentation] 異常終止コドン認識複合体とその制御メカニズム.2009

    • Author(s)
      山下暁朗, 泉奈津子, 勝畑有紀子, 沓沢慧, 番場由美, 大野茂男.
    • Organizer
      第11回日本RNA学会年会
    • Place of Presentation
      新潟
    • Year and Date
      2009-07-27
    • Related Report
      2009 Annual Research Report
  • [Presentation] THE REMODELING OF MRNA SURVEILLANCE COMPLEX DURING NONSENSE-MEDIATED MRNA DECAY.2009

    • Author(s)
      Yamashita A, Izumi N, Okada-Katsuhata Y, Kutsuzawa K, Muramatsu R, Sarri B, Iwamatsu A, Hirano H, Hirahata F, Anderson P, Ohno S.
    • Organizer
      Cold spring harbor laboratory meeting 2009 mRNA processing
    • Place of Presentation
      New York
    • Related Report
      2010 Final Research Report
  • [Presentation] 異常終止コドン認識複合体とその制御メカニズム.2009

    • Author(s)
      山下暁朗, 泉奈津子, 勝畑有紀子, 沓沢慧, 番場由美, 大野茂男.
    • Organizer
      第11回日本RNA学会年会.
    • Related Report
      2010 Final Research Report
  • [Book] 疾患との関わり.(mRNA surveillanceの分子機構と生命現象.) 28(10)2010

    • Author(s)
      山下暁朗, 臼杵扶佐子.
    • Publisher
      実験医学.
    • Related Report
      2010 Final Research Report
  • [Book] 実験医学2010

    • Author(s)
      山下暁朗、臼杵扶佐子
    • Publisher
      mRNA surveillanceの分子機構と生命現象、疾患との関わり
    • Related Report
      2010 Annual Research Report
  • [Book] NMDと疾患.29(2)2009

    • Author(s)
      臼杵扶佐子, 山下暁朗.
    • Publisher
      細胞工学.
    • Related Report
      2010 Final Research Report
  • [Book] 54(16)2009

    • Author(s)
      山下暁朗, 臼杵扶佐子.
    • Publisher
      タンパク質核酸酵素.(mRNA品質管理システムと疾患)
    • Related Report
      2010 Final Research Report
  • [Remarks] ホームページ等

    • URL

      http://www-user.yokohama-cu.ac.jp/~saikin/index.html

    • Related Report
      2010 Final Research Report
  • [Remarks]

    • URL

      http://www-user.yokohama-cu.ac.jp/~saikin/index.html

    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • URL

      http://www.yokohama-cu.ac.jp/amedrc/ohno2010_4.html

    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • URL

      http://www.yokohama-cu.ac.jp/amedrc/0501ohno.html

    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • URL

      http://www-user.yokohama-cu.ac.jp/~saikin/index.html

    • Related Report
      2009 Annual Research Report
  • [Remarks]

    • URL

      http://www.yokohama-cu.ac.jp/amedrc/ohno2010_4.html

    • Related Report
      2009 Annual Research Report
  • [Remarks]

    • URL

      http://www.yokohama-cu.ac.jp/amedrc/0501ohno.html

    • Related Report
      2009 Annual Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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