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Estimation of DNA degradation and STR success rate by determining the DNA degradation ratio using quantitative PCR

Research Project

Project/Area Number 21790617
Research Category

Grant-in-Aid for Young Scientists (B)

Allocation TypeSingle-year Grants
Research Field Legal medicine
Research InstitutionNational Research Institute of Police Science

Principal Investigator

KITAYAMA Tetsushi  National Research Institute of Police Science, 法科学第一部, 研究員 (60462751)

Project Period (FY) 2009 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2010: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2009: ¥2,470,000 (Direct Cost: ¥1,900,000、Indirect Cost: ¥570,000)
Keywords定量PCR / STR型検査 / 遺伝学 / 遺伝子 / 核酸 / ゲノム / 酵素
Research Abstract

Quantitative PCR assays using primers that generate two sizes of amplicons from the same region of genomic DNA were used to determine the extent of DNA degradation. The distribution of the extent of DNA degradation and the number of loci detected by STR analysis in blood stains correlated well with that of DNA artificially degraded by DNase I in the presence of Mn^<2+>. Thus, determination of the extent of DNA degradation was helpful for estimating the number of detectable loci. We were able to remove the PCR inhibitory substances that were copurified with DNA from bone sample using the new DNA extraction procedure. Therefore, the degradation ratio appeared to be a useful for predicting the number of loci detected by STR analysis in casework sample.

Report

(3 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • Research Products

    (5 results)

All 2010 2009

All Journal Article (1 results) (of which Peer Reviewed: 1 results) Presentation (4 results)

  • [Journal Article] Evaluation of a new experimental kit for the extraction of DNA from bones and teeth using a non-powder method2010

    • Author(s)
      Tetsushi Kitayama, Yoshinori Ogawa, Koji Fujii, Hiroaki Nakahara, Natsuko Mizuno, Kazumasa Sekiguchi, Hirofumi Fukushima
    • Journal Title

      12

      Pages: 84-89

    • NAID

      10029882906

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Presentation] Quantitative PCR Assays for the Estimation of the DNA Degradation in Bone Samples2010

    • Author(s)
      Tetsushi Kitayama
    • Organizer
      21st International Symposium on Human Identification
    • Place of Presentation
      San Antonio
    • Year and Date
      2010-10-13
    • Related Report
      2010 Final Research Report
  • [Presentation] A quantitative PCR assay for the estimation of the DNA degradation in case-type samples.2010

    • Author(s)
      北山哲史
    • Organizer
      第21回国際個人識別シンポジウム
    • Place of Presentation
      JW Marriott(テキサス州)
    • Year and Date
      2010-10-13
    • Related Report
      2010 Annual Research Report
  • [Presentation] A real-time PCR assay for the estimation of the DNA degradation2009

    • Author(s)
      Tetsushi Kitayama
    • Organizer
      20th International Symposium on Human Identification
    • Place of Presentation
      Las Vegas
    • Year and Date
      2009-10-14
    • Related Report
      2010 Final Research Report
  • [Presentation] A real-time PCR assay for the estimation of the DNA degradation2009

    • Author(s)
      北山哲史
    • Organizer
      第20回国際個人識別シンポジウム
    • Place of Presentation
      JW Marriott(ネバダ州)
    • Year and Date
      2009-10-14
    • Related Report
      2009 Annual Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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