• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Computing with in vitro biochemical networks

Research Project

Project/Area Number 21810004
Research Category

Grant-in-Aid for Research Activity Start-up

Allocation TypeSingle-year Grants
Research Field Nanomaterials/Nanobioscience
Research InstitutionThe University of Tokyo

Principal Investigator

RONDELEZ Yannick  The University of Tokyo, 生産技術研究所, 特任准教授 (10548770)

Project Period (FY) 2009 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥2,756,000 (Direct Cost: ¥2,120,000、Indirect Cost: ¥636,000)
Fiscal Year 2010: ¥1,313,000 (Direct Cost: ¥1,010,000、Indirect Cost: ¥303,000)
Fiscal Year 2009: ¥1,443,000 (Direct Cost: ¥1,110,000、Indirect Cost: ¥333,000)
KeywordsDNAコンピュータ / DNA増幅反応 / 生化学ネットワーク
Research Abstract

Living organisms perform and control complex behaviors by using webs of chemical reactions organized in precise networks. This powerful system concept is at the very core of biology, but it is extremely difficult to rationally create such architectures in artificial, non-living systems. Here we use standard in vitro reactions from molecular biology to describe a toolkit for such a purpose. This approach is demonstrated by assembling an efficient chemical oscillator : we encode the wiring of the corresponding network in the sequence of small DNA templates, and obtain the predicted dynamics. Our results show that the cascading of simple modules opens the possibility to rationally and predictably implement complex behaviors in vitro.

Report

(3 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • Research Products

    (6 results)

All 2011 2010 2009 Other

All Journal Article (2 results) (of which Peer Reviewed: 2 results) Presentation (3 results) Remarks (1 results)

  • [Journal Article] Programming an in vitro DNA oscillator using a molecular networking strategy2011

    • Author(s)
      K.Montagne, R.Plasson, Y.Sakai, T.Fujii, Y.Rondelez
    • Journal Title

      Molecular Systems Biology Vol.7

      Pages: 466-466

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Programming an in vitro DNA oscillator using a molecular networking strategy2011

    • Author(s)
      K.Montagne, R.Plasson, Y.Sakai, T.Fujii, Y.Rondelez.
    • Journal Title

      Molecular Systems Biology

      Volume: 7 Pages: 466-466

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] Microchamber array for cell-free protein synthesis from single DNA molecules2010

    • Author(s)
      S.H.Kim, Y.Rondelez, S.Takeuchi, S.Yoshizawa, D.Fourmy, T.Fujii
    • Organizer
      The 2010 International Chemical Congress of Pacific Basin Societies (PACIFICHEM 2010)
    • Place of Presentation
      Hawaii, USA
    • Year and Date
      2010-12-17
    • Related Report
      2010 Annual Research Report 2010 Final Research Report
  • [Presentation] Electro-active microwell array for trapping and lysing single2009

    • Author(s)
      S.H.Kim, T.Yamamoto, Y.Rondelez, D.Fourmy, T.Fujii
    • Organizer
      13th International Conference on Miniaturized Chemical and Biochemical Analysis Systems (MicroTAS2009)
    • Place of Presentation
      済州,韓国
    • Year and Date
      2009-11-04
    • Related Report
      2010 Final Research Report
  • [Presentation] Electro-active microwell array for trapping and lysing single2009

    • Author(s)
      S.H.Kim, T.Yamamoto, Y.Rondelez, D.Fourmy, T.Fujii
    • Organizer
      13th International Conference on Miniaturized Chemical and Biochemical Analysis Systems(MicroTAS2009)
    • Place of Presentation
      済州, 韓国
    • Year and Date
      2009-11-04
    • Related Report
      2009 Annual Research Report
  • [Remarks] ホームページ

    • URL

      http://limmshp.iis.u-tokyo.ac.jp/mediawiki/index.php/Yannick_RONDELEZ,_Dr.

    • Related Report
      2010 Final Research Report

URL: 

Published: 2009-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi