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Screening for novel factors involved in nucleotide excision repair

Research Project

Project/Area Number 21810022
Research Category

Grant-in-Aid for Research Activity Start-up

Allocation TypeSingle-year Grants
Research Field Risk sciences of radiation/Chemicals
Research InstitutionNagasaki University

Principal Investigator

NAKAZAWA Yuka  Nagasaki University, 医歯薬学総合研究科, COE研究員 (00533902)

Project Period (FY) 2009 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥2,652,000 (Direct Cost: ¥2,040,000、Indirect Cost: ¥612,000)
Fiscal Year 2010: ¥1,261,000 (Direct Cost: ¥970,000、Indirect Cost: ¥291,000)
Fiscal Year 2009: ¥1,391,000 (Direct Cost: ¥1,070,000、Indirect Cost: ¥321,000)
KeywordsDNA修復 / ヌクレオチド除去修復 / 紫外線 / エチニルデオキシウリジン / エチニルウリジン / In Cell Analyzer
Research Abstract

Nucleotide excision repair (NER) removes the major UV-photolesions from cellular DNA. Two assays commonly used in measurement of NER activity are 'unscheduled DNA synthesis (UDS)', and 'recovery of RNA synthesis (RRS)'. Reliable methods for these assays involved measurements of incorporation of radio-labeled nucleosides. We have established non-radioactive procedures for determining UDS and RRS levels by incorporation of alkyne-conjugated nucleoside analogues, 5-ethynyl-2'-deoxyuridine (EdU) and 5-ethynyuridine (EU). We assessed the UDS and RRS levels of several fibroblasts derived from NER-deficient patients by this non-radioactive assay system. Our results were in good agreement with those obtained by conventional assays, indicating that the system provides a convenient, but sensitive and accurate assay. We also demonstrated the utility of this technique for a large-scale siRNA-screening to identify novel NER factors.

Report

(3 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • Research Products

    (11 results)

All 2010 2009 Other

All Journal Article (2 results) (of which Peer Reviewed: 2 results) Presentation (5 results) Remarks (1 results) Patent(Industrial Property Rights) (3 results) (of which Overseas: 1 results)

  • [Journal Article] A semi-automated non-radioactive system for measuring recovery of RNA synthesis and unscheduled DNA synthesis using ethynyluracil derivatives.2010

    • Author(s)
      中沢由華.,S.Yamashita, A.Lehmann, T.Ogi.
    • Journal Title

      DNA Repair 9

      Pages: 506-516

    • NAID

      120006984626

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] A semi-automated non-radioactive system for measuring recovery of RNA synthesis and unscheduled DNA synthesis using ethynyluracil derivatives2010

    • Author(s)
      中沢由華
    • Journal Title

      DNA Repair 9

    • NAID

      120006984626

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] A rapid non-radioactive technique for measurement of nucleotide excision repair (NER) activity in primary human fibroblasts by incorporation of ethynyluracil derivatives2010

    • Author(s)
      中沢由華
    • Organizer
      The 7th 3R International Conference
    • Place of Presentation
      富山
    • Related Report
      2010 Final Research Report
  • [Presentation] A semi-automated non-radioactive system for measuring recovery of RNA synthesis and unscheduled DNA synthesis using ethynyluracil derivatives2010

    • Author(s)
      中沢由華
    • Organizer
      International Conference on Radiation and Cancer Biology at Nagasaki 2010
    • Place of Presentation
      長崎
    • Related Report
      2010 Final Research Report
  • [Presentation] A rapid non-radioactive technique for measurement of nucleotide excision repair (NER) activity in primary human fibroblasts by incorporation of ethynyluracil derivatives2010

    • Author(s)
      中沢由華
    • Organizer
      The 7th 3R(Replication, Recombination & Repair) symposium
    • Place of Presentation
      富山
    • Related Report
      2010 Annual Research Report
  • [Presentation] A rarid non-radioactive technique for measurement of repair synthesis in primary human fibroblasts by incorporation of ethynyl deoxyuridine(EdU)2009

    • Author(s)
      中沢由華
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Year and Date
      2009-12-09
    • Related Report
      2009 Annual Research Report
  • [Presentation] EdUを用いたUDS測定法とXP診断への応用2009

    • Author(s)
      中沢由華
    • Organizer
      第32回日本分子生物学会年会
    • Place of Presentation
      横浜
    • Related Report
      2010 Final Research Report
  • [Remarks] ホームページ等

    • Related Report
      2010 Final Research Report
  • [Patent(Industrial Property Rights)]2010

    • Inventor(s)
      中沢由華, 他2名
    • Industrial Property Rights Holder
      長崎大学
    • Industrial Property Number
      2009-172521
    • Filing Date
      2010-01-28
    • Related Report
      2010 Final Research Report
    • Overseas
  • [Patent(Industrial Property Rights)] 損傷DNA修復物質のスクリーニング方法2009

    • Inventor(s)
      中沢由華, 他2名
    • Industrial Property Rights Holder
      長崎大学
    • Industrial Property Number
      2009-172521
    • Filing Date
      2009-07-23
    • Related Report
      2010 Final Research Report
  • [Patent(Industrial Property Rights)] 損傷DNA修復物質のスクリーニング方法2009

    • Inventor(s)
      荻朋男, 他
    • Industrial Property Rights Holder
      長崎大学
    • Industrial Property Number
      2009-172521
    • Filing Date
      2009-07-23
    • Related Report
      2009 Annual Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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