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Elucidation of the mechanisms for collective motions of complex molecular systems with hierarchical structures

Research Project

Project/Area Number 21840051
Research Category

Grant-in-Aid for Research Activity Start-up

Allocation TypeSingle-year Grants
Research Field Biophysics/Chemical physics
Research InstitutionWaseda University

Principal Investigator

YANAO Tomohiro  Waseda University, 理工学術院, 講師 (40444450)

Project Period (FY) 2009 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥2,704,000 (Direct Cost: ¥2,080,000、Indirect Cost: ¥624,000)
Fiscal Year 2010: ¥1,287,000 (Direct Cost: ¥990,000、Indirect Cost: ¥297,000)
Fiscal Year 2009: ¥1,417,000 (Direct Cost: ¥1,090,000、Indirect Cost: ¥327,000)
Keywords非線形力学 / 幾何学 / クラスター / DNA / 集団運動 / 超球座標 / キラリティ / nanlinear dynamics / geometric mechanics / hyperspherical coordinates / atamic cluster / water cluste / chirality / nucleosome / nonlinear dynamics / atomic cluster / water cluster / ozone
Research Abstract

This study focused on the mechanisms for large-amplitude collective motions of complex molecular systems with highly-organized hierarchical structures and functions. We found that specific mode coupling and energy transfer among internal (vibrational) modes govern the onset and rates of structural transitions of atomic/molecular clusters. We also scrutinized elastic properties of DNA and clarified the mechanisms for the spontaneous selection of chirality of higher-order structures of DNA.

Report

(3 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • Research Products

    (13 results)

All 2010 2009

All Journal Article (5 results) Presentation (8 results)

  • [Journal Article] A nonequilibrium rate formula for collective motions of complex molecular systems2010

    • Author(s)
      T.Yanao, W.S.Koon, J.E.Marsden
    • Journal Title

      AIP Conference Proceedings Vol.1281

      Pages: 1597-1600

    • Related Report
      2010 Final Research Report
  • [Journal Article] Nonlinear dynamics and geometry of collective motions of complex molecular systems2010

    • Author(s)
      T. Yanao
    • Journal Title

      AIP Conference Proceedings Vol.1281

      Pages: 1571-1573

    • Related Report
      2010 Final Research Report
  • [Journal Article] Dynamical mechanisms for collective motions of nanostructures2010

    • Author(s)
      T. Yanao
    • Journal Title

      数理解析研究所講究録 Vol.1692

      Pages: 46-56

    • Related Report
      2010 Final Research Report
  • [Journal Article] Nonlinear dynamics and geometry of collective motions of complex molecular systems2010

    • Author(s)
      T.Yanao
    • Journal Title

      AIP Conference Proceedings

      Volume: 1281 Pages: 1571-1573

    • Related Report
      2010 Annual Research Report
  • [Journal Article] Dynamical mechanisms for collective motions of nanostructures2010

    • Author(s)
      T.Yanao
    • Journal Title

      数理解析研究所講究録

      Volume: 1692 Pages: 46-56

    • Related Report
      2010 Annual Research Report
  • [Presentation] A nonequilibrium rate formula for collective motions of complex molecular systems2010

    • Author(s)
      T.Yanao, W.S.Koon, J.E.Marsden
    • Organizer
      International Conference of Numerical Analysis and Applied Mathematics 2010
    • Place of Presentation
      Rhodes (Greece)(招待講演)
    • Year and Date
      2010-09-24
    • Related Report
      2010 Annual Research Report
  • [Presentation] 原子分子集合体の振動回転モード解析と集団運動の発現機構2010

    • Author(s)
      柳尾朋洋
    • Organizer
      力学系研究会
    • Place of Presentation
      横浜
    • Year and Date
      2010-03-29
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Presentation] Dimension reduction and the trigger mechanisms for conformational transitions of complex molecular systems2010

    • Author(s)
      柳尾朋洋
    • Organizer
      Workshop on Dynamical systems theory and reaction dynamics toward large systems
    • Place of Presentation
      Kyoto
    • Year and Date
      2010-01-06
    • Related Report
      2010 Final Research Report
  • [Presentation] Dimension reduction and the trigger mechanisms for conformational transitions of complex molecular systems2010

    • Author(s)
      柳尾朋洋
    • Organizer
      Workshop on dynamical systems theory and reaction dynamics toward large systems
    • Place of Presentation
      京都
    • Year and Date
      2010-01-06
    • Related Report
      2009 Annual Research Report
  • [Presentation] ナノ秩序構造体の集団運動の力学的機構2009

    • Author(s)
      柳尾朋洋
    • Organizer
      数理解析研究所研究集会
    • Place of Presentation
      京都
    • Year and Date
      2009-12-21
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Presentation] 原子分子集合体の構造変化運動の超球モード解析2009

    • Author(s)
      柳尾朋洋
    • Organizer
      第7回京都大学福井謙一記念研究センターシンポジウム
    • Place of Presentation
      京都
    • Year and Date
      2009-12-04
    • Related Report
      2010 Final Research Report
  • [Presentation] 原子分子集合体の構造変化運動の超球モード解析2009

    • Author(s)
      柳尾朋洋
    • Organizer
      第7回京都大学福井謙-記念研究センターシンポジウム
    • Place of Presentation
      京都
    • Year and Date
      2009-12-04
    • Related Report
      2009 Annual Research Report
  • [Presentation] 高次元分子反応における位相空間構造の縮約と非平衡速度論2009

    • Author(s)
      柳尾朋洋, W.S.Koon, J.E.Marsden
    • Organizer
      分子科学討論会
    • Place of Presentation
      名古屋
    • Year and Date
      2009-09-24
    • Related Report
      2010 Final Research Report 2009 Annual Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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