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Analysis and synthesis of gene expression networks

Research Project

Project/Area Number 21870017
Research Category

Grant-in-Aid for Research Activity Start-up

Allocation TypeSingle-year Grants
Research Field Functional biochemistry
Research InstitutionKyoto University

Principal Investigator

EBISUYA Miki  Kyoto University, 医学研究科, 助教 (00544933)

Project Period (FY) 2009 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥2,756,000 (Direct Cost: ¥2,120,000、Indirect Cost: ¥636,000)
Fiscal Year 2010: ¥1,313,000 (Direct Cost: ¥1,010,000、Indirect Cost: ¥303,000)
Fiscal Year 2009: ¥1,443,000 (Direct Cost: ¥1,110,000、Indirect Cost: ¥333,000)
Keywords遺伝子発現 / 網羅的解析 / 人工遺伝子回路 / 綱羅的解析
Research Abstract

In this work, we analyzed and synthesized gene expression networks. The aim of the synthesis project is to create "artificial cell-cell communications". We designed small gene networks using the modified Notch pathway, transcription factors and cultured cells. So far, we have successfully made a system by which the neighboring cells mutually regulate each other's gene expression. In the analysis project, on the other hand, we studied the mechanism and generality of the "transcriptional ripple effect". The obtained results have suggested that the ripple effect occurs only at specific genomic locations and/or under specific cellular conditions.

Report

(3 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • Research Products

    (17 results)

All 2011 2010 2009 Other

All Journal Article (6 results) (of which Peer Reviewed: 6 results) Presentation (10 results) Remarks (1 results)

  • [Journal Article] ERK5 Regulates Muscle Cell Fusion through Klf Transcription Factors.2011

    • Author(s)
      Sunadome K, Yamamoto T, Ebisuya M, Kondoh K, Sehara-Fujisawa A, Nishida E.
    • Journal Title

      Dev Cell. 20

      Pages: 192-205

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] ERK5 Regulates Muscle Cell Fusion through Klf Transcription Factors.2011

    • Author(s)
      Sunadome K, Yamamoto T, Ebisuya M, Kondoh K, Sehara-Fujisawa A, Nishida E.
    • Journal Title

      Dev Cell.

      Volume: 20 Pages: 192-205

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Revolving movement of a dynamic cluster of actin filaments during mitosis.2010

    • Author(s)
      Mitsushima M, Aoki K, Ebisuya M, Matsumura S, Yamamoto T, Matsuda M, Toyoshima F, Nishida E.
    • Journal Title

      J Cell Biol. 191

      Pages: 453-462

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] The closely related RNA helicases, UAP56 and URH49, preferentially form distinct mRNA export machineries and coordinately regulate mitotic progression.M2010

    • Author(s)
      Yamazaki T, Fujiwara N, Yukinaga H, Ebisuya M, Shiki T, Kurihara T, Kioka N, Kambe T, Nagao M, Nishida E, Masuda S.
    • Journal Title

      ol Biol Cell. 21

      Pages: 2953-2965

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] The closely related RNA helicases, UAP56 and URH49, preferentially form distinct mRNA export machineries and coordinately regulate mitotic progression.2010

    • Author(s)
      Yamazaki T, Fujiwara N, Yukinaga H, Ebisuya M, Shiki T, Kurihara T, Kioka N, Kambe T, Nagao M, Nishida E, Masuda S.
    • Journal Title

      Mol Biol Cell.

      Volume: 21 Pages: 2953-2965

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Revolving movement of a dynamic cluster of actin filaments during mitosis.2010

    • Author(s)
      Mitsushima M, Aoki K, Ebisuya M, Matsumura S, Yamamoto T, Matsuda M, Toyoshima F, Nishida E.
    • Journal Title

      J Cell Biol.

      Volume: 191 Pages: 453-462

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] 遺伝子ネットワークの作製と解析2010

    • Author(s)
      戎家美紀
    • Organizer
      第二回光塾
    • Place of Presentation
      大阪大学吹田キャンパス
    • Year and Date
      2010-12-12
    • Related Report
      2010 Final Research Report
  • [Presentation] 遺伝子ネットワークの作製と解析2010

    • Author(s)
      戎家美紀
    • Organizer
      第二回光塾
    • Place of Presentation
      大阪大学吹田キャンパス(招待講演)
    • Year and Date
      2010-12-12
    • Related Report
      2010 Annual Research Report
  • [Presentation] 遺伝子発現パターンの網羅的解析と新規作製2010

    • Author(s)
      戎家美紀、西田栄介
    • Organizer
      BMB2010
    • Place of Presentation
      神戸ポートアイランド
    • Year and Date
      2010-12-09
    • Related Report
      2010 Final Research Report
  • [Presentation] 遺伝子発現パターンの網羅的解析と新規作製2010

    • Author(s)
      戎家美紀、西田栄介
    • Organizer
      BMB2010
    • Place of Presentation
      神戸ポートアイランド(招待講演)
    • Year and Date
      2010-12-09
    • Related Report
      2010 Annual Research Report
  • [Presentation] Analysis and synthesis of transcriptional networks2010

    • Author(s)
      戎家美紀
    • Organizer
      Symposium「SYNTHETIC BIOLOGY : FROM THE PRESENT INTO THE FUTURE」
    • Place of Presentation
      京都大学
    • Year and Date
      2010-03-25
    • Related Report
      2010 Final Research Report
  • [Presentation] Analysis and synthesis of transcriptional networks2010

    • Author(s)
      戎家美紀
    • Organizer
      Symposium「SYNTHETIC BIOLOGY : FROM THE PRE SENT INTO THE FUTURE」
    • Place of Presentation
      京都大学
    • Year and Date
      2010-03-25
    • Related Report
      2009 Annual Research Report
  • [Presentation] 細胞周期におけるMAPキナーゼ経路依存的な転写調節機構の解析2010

    • Author(s)
      戎家美紀、山本拓也、西田栄介
    • Organizer
      がん研究に係わる特定領域研究合同シンポジウム
    • Place of Presentation
      学術総合センター-橋記念講堂
    • Year and Date
      2010-01-14
    • Related Report
      2010 Final Research Report
  • [Presentation] 遺伝子発現パターンを網羅的に調べたり小規模に作ったり2010

    • Author(s)
      戎家美紀
    • Organizer
      定量生物学の会第二回年会
    • Place of Presentation
      大阪大学吹田キャンパス
    • Year and Date
      2010-01-11
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Presentation] 遺伝子ネットワークの解析と作製2009

    • Author(s)
      戎家美紀
    • Organizer
      第82回日本生化学会大会
    • Place of Presentation
      神戸ポートアイランド
    • Year and Date
      2009-10-22
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Presentation] 細胞周期におけるMAPキナーゼ経路依存的な転写調節機構の解析2009

    • Author(s)
      戎家美紀, 山本拓也, 西田栄介
    • Organizer
      がん研究に係わる特定領域研究合同シンポジウム
    • Place of Presentation
      学術総合センター 一橋記念講堂
    • Year and Date
      2009-01-14
    • Related Report
      2009 Annual Research Report
  • [Remarks] ホームページ等

    • Related Report
      2010 Final Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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