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Study Design and Statistical Analysis in a Genome-Wide Pharmacogenomics Study

Research Project

Project/Area Number 21890035
Research Category

Grant-in-Aid for Research Activity Start-up

Allocation TypeSingle-year Grants
Research Field Human genetics
Research InstitutionChiba University

Principal Investigator

SATO Yasunori  Chiba University, 医学部附属病院, 講師 (90536723)

Project Period (FY) 2009 – 2010
Project Status Completed (Fiscal Year 2010)
Budget Amount *help
¥2,652,000 (Direct Cost: ¥2,040,000、Indirect Cost: ¥612,000)
Fiscal Year 2010: ¥1,261,000 (Direct Cost: ¥970,000、Indirect Cost: ¥291,000)
Fiscal Year 2009: ¥1,391,000 (Direct Cost: ¥1,070,000、Indirect Cost: ¥321,000)
Keywordsゲノム / 薬剤反応性 / 統計科学 / 遺伝疫学 / ゲノム網羅的アプローチ / ファーマコゲノミクス / 一塩基多型(SNP) / 生物統計手法 / 母集団薬物動態解析 / 一塩基多型 / 薬物動態解析 / 統計学的アプローチ / 生存時間解析
Research Abstract

The purpose of this research is to examine problems of study design and analyzing methods for genome-wide pharmacogenomics studies from statistical viewpoints, and then to present new proposals in order to contribute to the development of personalized. In this study, three specific issues were addressed regarding the genome-wide pharmacogenomics studies as follows ; i) Statistical analysis for the association between pharmacokinetics and SNP, ii) Statistical analysis for the association between clinical outcome and SNP, iii) Statistical analysis for PK and SNP-PD modeling. These findings of research were reported in academic journals and meetings.

Report

(3 results)
  • 2010 Annual Research Report   Final Research Report ( PDF )
  • 2009 Annual Research Report
  • Research Products

    (19 results)

All 2011 2010 2009 Other

All Journal Article (12 results) (of which Peer Reviewed: 12 results) Presentation (5 results) Remarks (2 results)

  • [Journal Article] Genome-wide association study detected candidate polvmorphisms associated with overall survival (OS) in advanced non-small cell lung cancer treated with carboplatin and paclitaxel.2011

    • Author(s)
      Sato Y, Yamamoto N, Kunitoh H, Ohe Y, Minami H, Laird NM, Katori N, Saito Y, Ohnami S, Sakamoto H, Sawada J, Saijo N, Yoshida T, Tamura T.
    • Journal Title

      J Thorac Oncol. 6

      Pages: 132-138

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Genome-wide association study detected candidate polymorphisms associated with overall survival (OS) in advanced non-small cell lung cancer treated with carboplatin and paclitaxel2011

    • Author(s)
      Sato Y., et al
    • Journal Title

      J Thorac Oncol

      Volume: 6 Pages: 132-138

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Detection of inappropriate samples in association studies by an IBS-based method considering linkage disequilibrium between genetic markers.2010

    • Author(s)
      Andoh M, Sato Y, Sakamoto H, Yoshida T, Ohtaki M.
    • Journal Title

      J Hum Genet. 53

      Pages: 436-440

    • NAID

      10030735869

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Bio statistic tools in Pharmacogenomics-advances, challenges, potential.2010

    • Author(s)
      Sato Y, Laird NM, Yoshida T.
    • Journal Title

      Cur Pharm Design.

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Genetic Polymorphisms in Folate and Alcohol metabolism and breast cancer risk : A case-control study in Thai women.2010

    • Author(s)
      Sangrajrang S, Sato Y, Sakamoto H, Ohnami S, Khuhaprema T, Yoshida T.
    • Journal Title

      Breast Cancer Res Treat.

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] 個別化医療のための研究デザインと統計解析法2010

    • Author(s)
      佐藤泰憲, 長島健悟, 浜田知久馬
    • Journal Title

      臨床薬理 41

      Pages: 291-300

    • NAID

      10027754505

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Detection of inappropriate samples in association studies by an IBS-based method considering linkage disequilibrium between genetic markers2010

    • Author(s)
      Andoh M, Sato Y, Sakamoto H, Yoshida T, Ohtaki M
    • Journal Title

      J Hum Genet

      Volume: 55 Pages: 436-440

    • NAID

      10030735869

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 個別化医療のための研究デザインと統計解析法2010

    • Author(s)
      佐藤泰憲, 長島健悟, 浜田知久馬
    • Journal Title

      臨床薬理

      Volume: 41 Pages: 291-300

    • NAID

      10027754505

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Biostatistic tools in Pharmacogenomics-advances, challenges, potential.2010

    • Author(s)
      Sato Y., et al
    • Journal Title

      Cur Pharm Design (印刷中)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genetic Polymorphisms in Folate and Alcohol metabolism and breast cancer risk : A case-control study in Thai women2010

    • Author(s)
      Sangrajrang S., et al
    • Journal Title

      Breast Cancer Res Treat (印刷中)

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Statistical screening method for genetic. factors influencing susceptibility to common diseases in a two-stage genome-wide association study.2009

    • Author(s)
      Sato Y, Laird N, Suganami H. Hamata C, Niki N, Yoshimura I, Yoshida T.
    • Journal Title

      Stat Appl Genet Mol Biol.

    • Related Report
      2010 Final Research Report
    • Peer Reviewed
  • [Journal Article] Statistical screening method for genetic factors influencing susceptibility to common diseases in a two-stage genome-wide association study2009

    • Author(s)
      Sato Y., et al
    • Journal Title

      Stat Appl Genet Mol Biol 8

    • Related Report
      2009 Annual Research Report
    • Peer Reviewed
  • [Presentation] Studentized modified maximum contrast method for unequal sample sizes in pharmacogenomics Studies.2010

    • Author(s)
      Nagashima K, Sato Y. Hamada C.
    • Organizer
      International Biometric Society.
    • Place of Presentation
      Florianopolis, Brazil.
    • Year and Date
      2010-12-10
    • Related Report
      2010 Final Research Report
  • [Presentation] Studentized modified maximum contrast method for unequal sample sizes in pharmacogenomics STUDIES2010

    • Author(s)
      Nagashima K, Sato Y, Hamada C.
    • Organizer
      International Biometric Society
    • Place of Presentation
      Florianopolis, Brazil
    • Year and Date
      2010-12-10
    • Related Report
      2010 Annual Research Report
  • [Presentation] Genome-wide association scan detected candidate polymorphisms associated with overall survival (OS) in advanced non-small cell lung cancer (NSCLC) treated with carboplatin (CBDCA) and paclitaxel (PTX).2009

    • Author(s)
      Sato Y, Yamamoto N, Tamura T, Kunitoh H, Ohe Y, Katori N, Sawada J, Sakamoto H, Saijo N, Yoshida T.
    • Organizer
      第45回米国臨床腫瘍学会
    • Place of Presentation
      米国・オーランド
    • Related Report
      2010 Final Research Report
  • [Presentation] Genome-wide association scan detected candidate polymorphisms associated with overall survival in stage IV pancreatic adenocarcinoma patients receiving gemcitabine monotherapy.2009

    • Author(s)
      Uenol H, Okusakal T, Furuse J, Ishii H, Saijo N, Saito Y, Sawada J, Sakamoto H, Yoshida T, Sato Y.
    • Organizer
      第45回米国臨床腫瘍学会
    • Place of Presentation
      米国・オーランド
    • Related Report
      2010 Final Research Report 2009 Annual Research Report
  • [Presentation] Genome-wide association scan detected candidate polymorphisms associated with overall survival(OS)in advanced non-small cell lung cancer(NSCLC)treated with carboplatin(CBDCA)and paclitaxel(PTX).2009

    • Author(s)
      佐藤泰憲
    • Organizer
      第45回米国臨床腫瘍学会
    • Place of Presentation
      米国・オーランド
    • Related Report
      2009 Annual Research Report
  • [Remarks]

    • URL

      http://cran.r-project.org/web/packages/mmcm/

    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • URL

      https://gemdbj.nibio.go.jp/dgdb/

    • Related Report
      2010 Annual Research Report

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Published: 2009-04-01   Modified: 2016-04-21  

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