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Investigating spider silk self-assembly via liquid-liquid phase separation

Research Project

Project/Area Number 21K06043
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 43020:Structural biochemistry-related
Research InstitutionInstitute of Physical and Chemical Research (2021, 2023)
Tokyo Institute of Technology (2022)

Principal Investigator

Malay Ali  国立研究開発法人理化学研究所, 環境資源科学研究センター, 上席研究員 (40467006)

Project Period (FY) 2021-04-01 – 2024-03-31
Project Status Completed (Fiscal Year 2023)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2023: ¥260,000 (Direct Cost: ¥200,000、Indirect Cost: ¥60,000)
Fiscal Year 2022: ¥390,000 (Direct Cost: ¥300,000、Indirect Cost: ¥90,000)
Fiscal Year 2021: ¥3,510,000 (Direct Cost: ¥2,700,000、Indirect Cost: ¥810,000)
Keywordssilk / biopolymer / liquid phase separation / biomolecular condensate / biomimetic / fibrous protein / coacervate / nanofibril / self-assembly / biomimetics / phase separation / spider / biomaterial / biochemistry / silk protein
Outline of Research at the Start

Spider silk is a protein biopolymer with extreme mechanical properties; however, the mechanism for silk fiber formation is not well understood. Recently, we found that spider silk undergoes self-assembly via liquid-liquid phase separation and nanoscale fibril formation in response to different chemical stimuli. In this project we will explore the sequence features of silk proteins that govern the the self-assembly process. These results will help develop methods to produce artificial spider silk fibers that mimic the hierarchical structure and mechanical properties of natural spider silk.

Outline of Final Research Achievements

Most of the research goals discussed in the grant proposal were achieved, including the design and evaluation of spider silk protein (spidroin) sequence variants to investigate the role of conserved motifs within the repetitive regions of MaSp2, particularly in the context of liquid-liquid phase separation (LLPS) behavior and self-assembly into hierarchical nanofibril structures in response to native-like chemical and physical gradients. In addition, a novel platform for recombinant MaSp1 production was established, allowing the detailed characterization of LLPS events and development of a method for real-time monitoring of the self-assembly process from soluble protein state into hierarchically organized fibers. Furthermore, investigations into the synergistic effects of MaSp1 and MaSp2 with respect to dragline fiber structure and function have been carried out. Finally, a study concerning the self-assembly of recombinant spider silk via microfluidics has been completed.

Academic Significance and Societal Importance of the Research Achievements

材料科学における長年の目標は、驚異的な強靭さと生体適合性で知られるクモの糸の特性に匹敵するかそれを上回る人工繊維を製造することである。この研究では、天然繊維の紡績装置内で起こる複雑な化学的・物理的プロセスを理解し再現することで、必要最小限のエネルギーと非常に低い環境フットプリントで高性能繊維を実現しようとしている。また、慎重に設計された組換えタンパク質配列と液液相分離の応用、および原生に近い物理化学的トリガーに反応するナノフィブリルの自己組織化に基づき、人工クモ糸製造のためプラットフォームを作ろると試みこれらの成果は将来、高性能で環境に優しい素材のさらなる開発につながることが期待される。

Report

(4 results)
  • 2023 Annual Research Report   Final Research Report ( PDF )
  • 2022 Research-status Report
  • 2021 Research-status Report
  • Research Products

    (14 results)

All 2024 2023 2022 2021

All Journal Article (9 results) (of which Int'l Joint Research: 9 results,  Peer Reviewed: 9 results,  Open Access: 4 results) Presentation (5 results) (of which Int'l Joint Research: 1 results,  Invited: 1 results)

  • [Journal Article] Replicating shear-mediated self-assembly of spider silk through microfluidics2024

    • Author(s)
      Jianming Chen, Arata Tsuchida, Ali D. Malay, Kousuke Tsuchiya, Hiroyasu Masunaga, Yui Tsuji, Mako Kuzumoto, Kenji Urayama, Hirofumi Shintaku & Keiji Numata
    • Journal Title

      Nature Communications

      Volume: 15 Issue: 1 Pages: 527-527

    • DOI

      10.1038/s41467-024-44733-1

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] NMR assignment and dynamics of the dimeric form of soluble C-terminal domain major ampullate spidroin 2 from Latrodectus hesperus2023

    • Author(s)
      NA Oktaviani, AD Malay, M Goto, T Nagashima, F Hayashi, K Numata
    • Journal Title

      Biomolecular NMR Assignments

      Volume: 17 Issue: 2 Pages: 249-255

    • DOI

      10.1007/s12104-023-10150-6

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Unusual pKa Values Mediate the Self-Assembly of Spider Dragline Silk Proteins2023

    • Author(s)
      Oktaviani Nur Alia、Malay Ali D.、Matsugami Akimasa、Hayashi Fumiaki、Numata Keiji
    • Journal Title

      Biomacromolecules

      Volume: 24 Issue: 4 Pages: 1604-1616

    • DOI

      10.1021/acs.biomac.2c01344

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Micrometer‐Scale Optical Web Made of Spider Dragline Fibers with Optical Gate Operations2022

    • Author(s)
      Hendra、Yamagishi Hiroshi、Heah Wey Yih、Malay Ali D.、Numata Keiji、Yamamoto Yohei
    • Journal Title

      Advanced Optical Materials

      Volume: (none) Issue: 13 Pages: 2202563-2202563

    • DOI

      10.1002/adom.202202563

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] 1000 spider silkomes: Linking sequences to silk physical properties2022

    • Author(s)
      Arakawa Kazuharu、Kono Nobuaki、Malay Ali D.、Tateishi Ayaka、Ifuku Nao、et al.
    • Journal Title

      Science Advances

      Volume: 8 Issue: 41 Pages: 6043-6043

    • DOI

      10.1126/sciadv.abo6043

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A silk composite fiber reinforced by telechelic-type polyalanine and its strengthening mechanism2022

    • Author(s)
      Chen J, Tsuchiya K, Masunaga H, Malay AD, Numata K
    • Journal Title

      Polymer Chemistry

      Volume: 13 Issue: 13 Pages: 1869-1879

    • DOI

      10.1039/d2py00030j

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Complexity of spider dragline silk2022

    • Author(s)
      Malay AD, Craig HC, Chen J, Oktaviani NA, Numata K
    • Journal Title

      Biomacromolecules

      Volume: 23 Issue: 5 Pages: 1827-1840

    • DOI

      10.1021/acs.biomac.1c01682

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Multicomponent nature underlies the extraordinary mechanical properties of spider dragline silk2021

    • Author(s)
      Kono N, Nakamura H, Mori M, Yoshida Y, Ohtoshi R, Malay AD, Moran DAP, Tomita M, Numata K, Arakawa K.
    • Journal Title

      Proc. Natl. Acad. Sci. USA

      Volume: 118 Issue: 31

    • DOI

      10.1073/pnas.2107065118

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Darwin's bark spider shares a spidroin repertoire with Caerostris extrusa but achieves extraordinary silk toughness through gene expression.2021

    • Author(s)
      Kono N, Ohtoshi R, Malay AD, Mori M, Masunaga H, Yoshida Y, Nakamura H, Numata K, Arakawa K
    • Journal Title

      Open Biology

      Volume: 11 Issue: 12 Pages: 210242-210242

    • DOI

      10.1098/rsob.210242

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] Probing rapid self-assembly of MaSp1 from soluble protein to hierarchical fiber2023

    • Author(s)
      Ali D. Malay
    • Organizer
      Gordon Research Conference: Silk Proteins and the Transition to Biotechnologies
    • Related Report
      2023 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Probing rapid self-assembly of MaSp1 from soluble protein to hierarchical fiber2023

    • Author(s)
      Ali D. Malay, Keiji Numata
    • Organizer
      繊維学会「地球に優しい繊維材料研究委員会2023年度シンポジウム」
    • Related Report
      2023 Annual Research Report
    • Invited
  • [Presentation] Exploring the self-assembly of MaSp1 dragline silk spidroin into native-like hierarchical fibers2022

    • Author(s)
      Malay, Ali D.
    • Organizer
      71st Symposium on Macromolecules and the Society Polymer Science
    • Related Report
      2022 Research-status Report
  • [Presentation] Biomimetic self-assembly of spider silk via liquid-liquid phase separation2022

    • Author(s)
      Malay, Ali D.
    • Organizer
      Annual Meeting of the Society of Fiber Science and Technology
    • Related Report
      2021 Research-status Report
  • [Presentation] Dissecting the molecular basis for liquid-liquid phase separation of spider silk proteins during self-assembly2022

    • Author(s)
      Malay, Ali D.
    • Organizer
      ERATO Numata Organellar Reaction Cluster Project Symposium
    • Related Report
      2021 Research-status Report

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Published: 2021-04-28   Modified: 2025-01-30  

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