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Generating proteomic data on signalling pathways in pathogenic bacteria for the discovery of new antibiotic target molecules.

Research Project

Project/Area Number 21K06455
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 47010:Pharmaceutical chemistry and drug development sciences-related
Research InstitutionHiroshima University

Principal Investigator

Kinoshita Emiko  広島大学, 医系科学研究科(薬), 助教 (40379912)

Project Period (FY) 2021-04-01 – 2024-03-31
Project Status Completed (Fiscal Year 2023)
Budget Amount *help
¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2023: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2022: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2021: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Keywordsヒスチジンキナーゼ / 2成分伝達系 / レスポンスレギュレータ / リン酸化 / Phos-tag / 阻害剤 / 抗生物質 / 2成分伝達系 / ヒスチジンキナーゼ阻害剤
Outline of Research at the Start

近年,病原菌の薬剤耐性などに関わる情報伝達経路を構成するヒスチジンキナーゼを標的とした新規抗生物質の探索が進められている。また,その経路に関わる他のタンパク質も抗生物質の新規標的となり得ることが示唆されている。しかし,化学的に不安定なヒスチジンやアスパラギン酸のリン酸化を介するこの機構は,質量分析などが適用できず,情報経路を俯瞰できるプロテオームデータがない。本研究では,申請者らが開発した不安定リン酸化タンパク質の解析技術を利用し,細菌のシグナル伝達と外部環境因子との関連を網羅的に解析する。データから情報伝達機構のクロストークなどを発見し,新規抗生物質の標的分子を探索することを目的とする。

Outline of Final Research Achievements

In recent years, the development of inhibitors of histidine kinase (HK), which constitutes a signalling pathway involved in drug resistance, virulence development and growth potency of pathogenic bacteria, has been pursued in Japan and abroad. The aim of this study was to accumulate data on the comprehensive analysis of the relationship between signal activation by HK and external environmental factors using the ‘Fostag’ technique for analysing HK phosphorylation, so that the target molecules of novel antibiotics such as inhibitors can emerge. We created pseudo-E. coli in which several types of HKs, such as EvgS, which is considered to be involved in the development of virulence in pathogenic E. coli and dysenteriae, and HKs involved in drug resistance, were constantly expressed, and examined the transcriptome changes associated with the expression of these HKs.

Academic Significance and Societal Importance of the Research Achievements

薬剤耐性病原細菌は世界的脅威であり,それらの増殖,病原性,薬剤耐性遺伝子の発現にかかわる細菌独特のタンパク質は,既存の薬剤とは全く異なる作用店を持つ薬剤耐性菌にも有効な次世代型抗菌薬として期待され,開発が望まれている。しかし,それらのタンパク質の機能を俯瞰できるプロテオームデータはまだ揃っていない。それらの機能に迫るデータを蓄積することは,新しい抗菌薬の作用点の発見,開発に役立つ。

Report

(4 results)
  • 2023 Annual Research Report   Final Research Report ( PDF )
  • 2022 Research-status Report
  • 2021 Research-status Report
  • Research Products

    (16 results)

All 2023 2022 2021 Other

All Journal Article (9 results) (of which Peer Reviewed: 9 results,  Open Access: 9 results) Presentation (6 results) Remarks (1 results)

  • [Journal Article] Characterization of Zinc(II) Complex of 1,4,7,10-Tetrazacyclododecane and Deprotonated 5-Fluorouracil (FU) in Crystalline/Solution States and Evaluation of Anticancer Activity: Approach for Improving the Anticancer Activity of FU2023

    • Author(s)
      Yoshimi Ichimaru, Koichi Kato, Rina Nakatani, Kirara Sugiura, Hideki Mizutani, Emiko Kinoshita-Kikuta, Tohru Koike, Wanchun Jin, Masanori Imai, Hiromasa Kurosaki
    • Journal Title

      Inorganic Chemistry Communications

      Volume: 147 Pages: 110221-110221

    • DOI

      10.1016/j.inoche.2022.110221

    • Related Report
      2023 Annual Research Report 2022 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Use of <i>Escherichia coli</i> expression system for analyzing kinase motifs2022

    • Author(s)
      Kinoshita-Kikuta, E., Ino, Y., Kimura, Y., Akiyama, T., Kinoshita, E., Koike, T.
    • Journal Title

      Journal of Electrophoresis

      Volume: 66 Issue: 1 Pages: 13-20

    • DOI

      10.2198/jelectroph.66.13

    • ISSN
      1349-9394, 1349-9408
    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Characterization of phosphorylation status and kinase activity of Src family kinases expressed in cell-based and cell-free protein expression systems2022

    • Author(s)
      木下恵美子,木下英司,小池透
    • Journal Title

      Electrophoresis Letters

      Volume: 66 Issue: 2 Pages: 71-79

    • DOI

      10.2198/electroph.66.71

    • ISSN
      2189-2628, 2189-2636
    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Crystal Structure of Bis{1,3-bis[bis(pyridin-2-ylmethyl)amino]propan-​2-olato-dizinc(II)}orthophosphate Tris(perchlorate) Octahydrate, [(Phos-tag)<sub>2</sub>-PO<sub>4</sub><sup>3−</sup>][ClO<sub>4</sub><sup>−</sup>]<sub>3</sub>·8H<sub>2</sub>O2021

    • Author(s)
      Ichimaru Yoshimi、Kato Koichi、Jin Wanchun、Sugiura Kirara、Kinoshita-Kikuta Emiko、KINOSHITA Eiji、Kurosaki Hiromasa、Koike Tohru
    • Journal Title

      X-ray Structure Analysis Online

      Volume: 37 Issue: 0 Pages: 87-88

    • DOI

      10.2116/xraystruct.37.87

    • NAID

      130008127785

    • ISSN
      1883-3578
    • Year and Date
      2021-12-10
    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] An assay of human tyrosine protein kinase ABL activity using an Escherichia coli protein expression system.2021

    • Author(s)
      Kinoshita-Kikuta E, Yoshimoto M, Yano M, Eiji Kinoshita, Koike T.
    • Journal Title

      Biotechniques

      Volume: 70(4) Issue: 4 Pages: 209-217

    • DOI

      10.2144/btn-2020-0154

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Characterization of phosphorylation status and kinase activity of Src family kinases expressed in cell-based and cell-free protein expression system.2021

    • Author(s)
      Kinoshita-Kikuta E, Eiji Kinoshita, Suga M, Higashida M, Yamane Y, Nakamura T, Koike T.
    • Journal Title

      Biomolecules

      Volume: 11(10) Issue: 10 Pages: 1448-1448

    • DOI

      10.3390/biom11101448

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Evaluation of four phosphopeptide enrichment strategies for mass spectrometry‐based proteomic analysis2021

    • Author(s)
      Ino Yoko、Kinoshita Eiji、Kinoshita‐Kikuta Emiko、Akiyama Tomoko、Nakai Yusuke、Nishino Kohei、Osada Makoto、Ryo Akihide、Hirano Hisashi、Koike Tohru、Kimura Yayoi
    • Journal Title

      PROTEOMICS

      Volume: 22 Issue: 7 Pages: 2100216-2100216

    • DOI

      10.1002/pmic.202100216

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Recent advances in the Phos-tag technique focused on the analysis of phosphoproteins in a bacterial two-component system.2021

    • Author(s)
      Kinoshita-Kikuta E., Koike T., Kinoshita E
    • Journal Title

      J. Proteomics

      Volume: 252 Pages: 10429-10429

    • DOI

      10.1016/j.jprot.2021.104429

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] History of Phos-tag technology for phosphoproteomics.2021

    • Author(s)
      Kinoshita E., Kinoshita-Kikuta E., Koike T
    • Journal Title

      J. Proteomics

      Volume: 252 Pages: 104432-104432

    • DOI

      10.1016/j.jprot.2021.104432

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Presentation] 無細胞タンパク質合成系で作成したSrcファミリーチロシンキナーゼのリン酸化状態と活性2021

    • Author(s)
      木下恵美子、木下英司、小池透
    • Organizer
      第71回日本電気泳動学会シンポジウム
    • Related Report
      2021 Research-status Report
  • [Presentation] E. coli タンパク質共発現系を利用したチロシンキナーゼアッセイ2021

    • Author(s)
      木下恵美子、木下英司、小池透
    • Organizer
      62回 日本生化学会 中国・四国支部例会
    • Related Report
      2021 Research-status Report
  • [Presentation] 無細胞タンパク質合成系で作成したSrcファミリーチロシンキナーゼのリン酸化状態と活性2021

    • Author(s)
      木下恵美子、木下英司、小池透
    • Organizer
      94回 日本生化学会  2021,11/3-5
    • Related Report
      2021 Research-status Report
  • [Presentation] E. coli タンパク質共発現系を利用したチロシンキナーゼアッセイ2021

    • Author(s)
      木下恵美子、木下英司、小池透
    • Organizer
      第71回日本電気泳動学会総会
    • Related Report
      2021 Research-status Report
  • [Presentation] 新規ヒスチジンキナーゼ阻害剤スクリーニングのためのイムノドットブロットアッセイ2021

    • Author(s)
      丸田志乃、木下恵美子、木下英司、小池透
    • Organizer
      第71回日本電気泳動学会総会
    • Related Report
      2021 Research-status Report
  • [Presentation] 大腸菌の共発現システムを利用したABLチロシンキナーゼアッセイ2021

    • Author(s)
      吉本萌々香、矢野万莉奈、木下恵美子、木下英司、小池透
    • Organizer
      第71回日本電気泳動学会総会
    • Related Report
      2021 Research-status Report
  • [Remarks] Phos-tag SDS-PAGE データ集

    • URL

      http://phostag.hiroshima-u.ac.jp

    • Related Report
      2023 Annual Research Report 2022 Research-status Report 2021 Research-status Report

URL: 

Published: 2021-04-28   Modified: 2025-01-30  

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