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Designing of novel bone-inducing molecules by an experimental-computational approach

Research Project

Project/Area Number 21K09963
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 57040:Regenerative dentistry and dental engineering-related
Research InstitutionWaseda University

Principal Investigator

Nilson Kunioshi  早稲田大学, 理工学術院, 教授 (30254577)

Co-Investigator(Kenkyū-buntansha) ハラ エミリオ・サトシ  岡山大学, 医歯薬学域, 研究准教授 (40779443)
Project Period (FY) 2021-04-01 – 2024-03-31
Project Status Completed (Fiscal Year 2023)
Budget Amount *help
¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2023: ¥910,000 (Direct Cost: ¥700,000、Indirect Cost: ¥210,000)
Fiscal Year 2022: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2021: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Keywordsmineralization / quantum chemistry / reaction dynamics / reaction mechanisms / mineralization process / mineralization mechanism / phospholipids / activation energies / reaction mechanism / リン脂質 / 石灰化 / 骨再生 / in vitro実験 / 量子化学計算
Outline of Research at the Start

In this research, first the mechanism of mineralization of known (naturally occurring) phospholipids will be investigated in detail through experiments and computational chemistry methods. The origin of differences in mineralization ability of different phospholipids will be identified, and the mineralization mechanism elucidated. Then, novel molecules that can mineralize faster than the phospholipids investigated experimentally will be designed and synthesized. Finally, the mineralization ability of the designed novel molecules will be verified in vitro and in vivo.

Outline of Final Research Achievements

To elucidate the mechanism of mineralization of phospholipids, we first assumed that the hydrolysis reactions are the first step in the mechanism, releasing the phosphate group from the molecule to the aqueous solution and facilitating the formation of hydroxyapatite, for example. The dynamics of relevant elementary reactions was analyzed via quantum chemical calculations. Phospholipids having 6 carbons in the hydrophobic tail, and choline (PC6) or serine (PS6) as the hydrophilic head were chosen as the reactants. We started analyzing reactions of single molecures and then complexes composed of two phospholipids surrounding a Ca ion (2PC6Ca or 2PS6Ca). The steps involved in the hydrolysis reactions were identified, and the energies of reactants, transition states and products were determined. From the values of activation energy and heat release, the sequences through which the steps proceed were determined, and differences between the hydrolysis of 2PC6Ca and 2PS6Ca were found.

Academic Significance and Societal Importance of the Research Achievements

Recovery from bone fracture is slow and is a growing global social problem as the percentage of elderly people increases. Accelerating bone fracture repair would reduce treatment costs. The final aim of our research is to develop biomaterials that mineralize quickly and lead to fast bone formation.

Report

(4 results)
  • 2023 Annual Research Report   Final Research Report ( PDF )
  • 2022 Research-status Report
  • 2021 Research-status Report
  • Research Products

    (8 results)

All 2024 2023 2022 2021

All Presentation (8 results) (of which Int'l Joint Research: 3 results,  Invited: 1 results)

  • [Presentation] 複数種類のリン脂質分子の加水分解反応における量子化学計算2024

    • Author(s)
      程 雲昊,ハラ エミリオサトシ,国吉 ニルソン
    • Organizer
      日本化学会第104回春季年会
    • Related Report
      2023 Annual Research Report
  • [Presentation] Computational investigations of the formation mechanism of bone-like minerals from phospholipids2023

    • Author(s)
      Nilson Kunioshi, Emilio Satoshi Hara
    • Organizer
      20th International Conference on Crystal Growth and Epitaxy, ICGE20
    • Related Report
      2023 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Cell membrane as a potential cell-free therapeutic for rapid bone tissue engineering2023

    • Author(s)
      Emilio Satoshi Hara
    • Organizer
      XII Latin-American Congress of Artificial Organs and Biomaterials
    • Related Report
      2023 Annual Research Report
    • Int'l Joint Research
  • [Presentation] 細胞膜を材料として用いた組織工学アプローチ2023

    • Author(s)
      ハラエミリオサトシ
    • Organizer
      第45回日本バイオマテリアル学会大会
    • Related Report
      2023 Annual Research Report
  • [Presentation] リン脂質分子の石灰化反応における量子化学計算2023

    • Author(s)
      程 雲昊、ハラ エミリオサトシ、国吉 ニルソン
    • Organizer
      第103春季年会
    • Related Report
      2022 Research-status Report
  • [Presentation] 生体内初期石灰化を模倣したセラミックス複合材料の開発とその応用2023

    • Author(s)
      Hara ES, Anada R, Hatano E, Okada M, Matsumoto T.
    • Organizer
      第61回セラミックス基礎科学討論会
    • Related Report
      2022 Research-status Report
    • Invited
  • [Presentation] 量子化学計算によるリン脂質の石灰化機構の解析2022

    • Author(s)
      塩谷 恭史, ハラ エミリオ, 山口 勉功, 国吉 ニルソン
    • Organizer
      日本化学会第101回春季大会
    • Related Report
      2021 Research-status Report
  • [Presentation] Computational analysis of chemical reactions in the mineralization of phospholipids2021

    • Author(s)
      Nilson Kunioshi, , Emilio Satoshi Hara, Reina Kurihara, Takafumi Shiotani, Katsunori Yamaguchi
    • Organizer
      15th International Conference on Materials Chemistry (MC15)
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research

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Published: 2021-04-28   Modified: 2025-01-30  

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