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Development of e-learning environment for neuroimaging analysis

Research Project

Project/Area Number 21K12153
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeMulti-year Fund
Section一般
Review Section Basic Section 62030:Learning support system-related
Research InstitutionUniversity of Tsukuba

Principal Investigator

Nemoto Kiyotaka  筑波大学, 医学医療系, 准教授 (80550152)

Project Period (FY) 2021-04-01 – 2024-03-31
Project Status Completed (Fiscal Year 2023)
Budget Amount *help
¥4,160,000 (Direct Cost: ¥3,200,000、Indirect Cost: ¥960,000)
Fiscal Year 2023: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2022: ¥1,560,000 (Direct Cost: ¥1,200,000、Indirect Cost: ¥360,000)
Fiscal Year 2021: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Keywords脳画像解析 / 脳画像解析学習支援 / 学習支援環境 / eラーニング / ウェブ会議システム
Outline of Research at the Start

脳画像研究は非侵襲的に脳の構造や機能を探索することができるが、脳画像解析手法を習得することは容易ではない。各研究者が自分の研究室からライブセミナーに参加することができれば、自身の研究環境で解析手法が学ぶことができ、能率が向上する可能性がある。そこで、本研究では、ウェブ会議システムを活用した脳画像解析学習支援環境の開発を行う。このシステムの特徴は、学習コンテンツ以外にも、脳画像解析システムも提供すること、そして、個別サポートもパッケージングすることにより、個々の研究者の研究の論文化まで見据えているところである。

Outline of Final Research Achievements

In this study, we developed a learning support environment for brain image analysis using a web conferencing system. We created and released the brain image analysis system Lin4Neuro as a virtual machine. Additionally, we introduced the communication tool Pumble to build a community of researchers. Furthermore, we developed various scripts for handling DICOM images to support researchers and made these scripts publicly available. As a result, several brain image analysis projects that had been stalled were able to progress, contributing to the publication of over 20 papers.

Academic Significance and Societal Importance of the Research Achievements

脳画像解析に速やかに取り組める環境を構築し、PCビルダーと協働して脳画像解析ツールがプリインストールされているPCの発売も行うことができた。また、ビデオ会議ツールを使った画面共有、コミュニケーションツールを使ったインタラクティブなコミュニケーションを併用することで、脳画像解析の支障となる様々な問題が従前よりも速やかに解決されるようになった。さらに、近年IT業界で頻用されているバージョン管理ツールを活用することで、開発したスクリプトを公開するとともに、必要に応じてスクリプトを柔軟に改変することもできるようになった。

Report

(4 results)
  • 2023 Annual Research Report   Final Research Report ( PDF )
  • 2022 Research-status Report
  • 2021 Research-status Report
  • Research Products

    (30 results)

All 2024 2023 2022 2021 Other

All Journal Article (23 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 23 results,  Open Access: 17 results) Presentation (3 results) (of which Invited: 1 results) Remarks (4 results)

  • [Journal Article] Brain Healthcare Quotient as a Tool for Standardized Approach in Brain Healthcare Interventions2024

    • Author(s)
      Yoshida Keitaro、Nemoto Kiyotaka、Hamano Ami、Kawamori Masahito、Arai Tetsuaki、Yamakawa Yoshinori
    • Journal Title

      Life

      Volume: 14 Issue: 5 Pages: 560-560

    • DOI

      10.3390/life14050560

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Smartphone app for lifestyle improvement improves brain health and boosts the vitality and cognitive function of healthy middle‐aged adults2024

    • Author(s)
      Kokubun Keisuke、Nemoto Kiyotaka、Yamakawa Yoshinori
    • Journal Title

      Brain and Behavior

      Volume: 14 Issue: 5

    • DOI

      10.1002/brb3.3500

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Distinct eye movement patterns to complex scenes in Alzheimer’s disease and Lewy body disease2024

    • Author(s)
      Yamada Yasunori、Shinkawa Kaoru、Kobayashi Masatomo、Nemoto Miyuki、Ota Miho、Nemoto Kiyotaka、Arai Tetsuaki
    • Journal Title

      Frontiers in Neuroscience

      Volume: 18

    • DOI

      10.3389/fnins.2024.1333894

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Longitudinal reduction in brain volume in patients with schizophrenia and its association with cognitive function2024

    • Author(s)
      Yamazaki R, Matsumoto J, Ito S, Nemoto K, Fukunaga M, Hashimoto N, Kodaka F, Takano H, Hasegawa N, Yasuda Y, Fujimoto M, Yamamori H, Watanabe Y, Miura K, Hashimoto R
    • Journal Title

      Neuropsychopharmacology Reports

      Volume: 44 Issue: 1 Pages: 206-215

    • DOI

      10.1002/npr2.12423

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Continuous inhalation of essential oil increases gray matter volume2024

    • Author(s)
      Kokubun Keisuke、Nemoto Kiyotaka、Yamakawa Yoshinori
    • Journal Title

      Brain Research Bulletin

      Volume: 208 Pages: 110896-110896

    • DOI

      10.1016/j.brainresbull.2024.110896

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Nucleus accumbens degeneration in spinocerebellar ataxia type 2: a preliminary study2024

    • Author(s)
      Nakayama Kenjiro、Nemoto Kiyotaka、Arai Tetsuaki
    • Journal Title

      Psychogeriatrics

      Volume: 24 Issue: 2 Pages: 345-354

    • DOI

      10.1111/psyg.13080

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The Association between Lifestyles (Walking/Diet) and Cultural Intelligence: A New Attempt to Apply Health Science to Cross-Cultural Research2023

    • Author(s)
      Kokubun Keisuke、Nemoto Kiyotaka、Yamakawa Yoshinori
    • Journal Title

      Behavioral Sciences

      Volume: 14 Issue: 1 Pages: 28-28

    • DOI

      10.3390/bs14010028

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Prediction of Cochlear Implant Effectiveness With Surface-Based Morphometry2023

    • Author(s)
      Minami Shujiro、Takahashi Masahiro、Shinden Seiichi、Shirai Kyoko、Oishi Naoki、Nishimura Hiroshi、Masuda Masatsugu、Masuda Sawako、Nishiyama Takanori、Hosoya Makoto、Ueno Masafumi、Kashio Akinori、Yamada Hiroyuki、Matsunaga Tatsuo、Kaga Kimitaka、Shintani Ayumi、Nemoto Kiyotaka
    • Journal Title

      Otology & Neurotology

      Volume: 45 Issue: 2 Pages: 114-120

    • DOI

      10.1097/mao.0000000000004070

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Cerebral cortical structural alteration patterns across four major psychiatric disorders in 5549 individuals.2023

    • Author(s)
      J. Matsumoto,M. Fukunaga,K. Miura,K. Nemoto K,N. Okada, et al.
    • Journal Title

      Mol Psychiatry

      Volume: 28 Issue: 11 Pages: 4915-4923

    • DOI

      10.1038/s41380-023-02224-7

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Subcortical volumetric alterations in four major psychiatric disorders: a mega-analysis study of 5604 subjects and a volumetric data-driven approach for classification.2023

    • Author(s)
      N. Okada,et al.
    • Journal Title

      Mol Psychiatry.

      Volume: 28 Issue: 12 Pages: 5206-5216

    • DOI

      10.1038/s41380-023-02141-9

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Posterior cingulate cortex spontaneous activity associated with motor response inhibition in patients with obsessive-compulsive disorder: A resting-state fMRI study2023

    • Author(s)
      Tomiyama Hirofumi、Murayama Keitaro、Nemoto Kiyotaka、Tomita Mayumi、Hasuzawa Suguru、Mizobe Taro、Kato Kenta、Matsuo Akira、Ohno Aikana、Kan Minji、Togao Osamu、Hiwatashi Akio、Ishigami Kousei、Nakao Tomohiro
    • Journal Title

      Psychiatry Research: Neuroimaging

      Volume: 334 Pages: 111669-111669

    • DOI

      10.1016/j.pscychresns.2023.111669

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Gyrification of the medial and lateral orbitofrontal cortex in first-degree relatives of patients with obsessive-compulsive disorder2023

    • Author(s)
      Tomiyama Hirofumi、Murayama Keitaro、Nemoto Kiyotaka、Kato Kenta、Matsuo Akira、Ohno Aikana、Kang Mingi、Togao Osamu、Ishigami Kousei、Nakao Tomohiro
    • Journal Title

      Cerebral Cortex

      Volume: 33 Issue: 14 Pages: 8913-8920

    • DOI

      10.1093/cercor/bhad170

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Resting state hyperconnectivity of the default mode network in schizophrenia and clinical high-risk state for psychosis2023

    • Author(s)
      Sasabayashi Daiki、Takahashi Tsutomu、Takayanagi Yoichiro、Nemoto Kiyotaka、Ueno Maya、Furuichi Atsushi、Higuchi Yuko、Mizukami Yuko、Kobayashi Haruko、Yuasa Yusuke、Noguchi Kyo、Suzuki Michio
    • Journal Title

      Cerebral Cortex

      Volume: 33 Issue: 13 Pages: 8456-8464

    • DOI

      10.1093/cercor/bhad131

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Functional connectivity between pre-supplementary motor area and inferior parietal lobule associated with impaired motor response inhibition in first-degree relatives of patients with obsessive-compulsive disorder2023

    • Author(s)
      Hirofumi Tomiyama, Keitaro Murayama, Kiyotaka Nemoto, Mayumi Tomita, Kenta Kato 1 , Akira Matsuo, Aikana Ohno, Mingi Kang , Osamu Togao , Kousei Ishigami , Tomohiro Nakao
    • Journal Title

      Cerebral Cortex

      Volume: 9 Issue: 12 Pages: 7531-7539

    • DOI

      10.1093/cercor/bhad058

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Word-producing brain: Contribution of the left anterior middle temporal gyrus to word production patterns in spoken language2023

    • Author(s)
      Sugimoto Hikaru、Abe Masato S.、Otake-Matsuura Mihoko
    • Journal Title

      Brain and Language

      Volume: 238 Pages: 105233-105233

    • DOI

      10.1016/j.bandl.2023.105233

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Association between social comparison orientation and hippocampal properties in older adults: A multimodal MRI study2022

    • Author(s)
      Sugimoto Hikaru、Sekiguchi Takuya、Otake-Matsuura Mihoko
    • Journal Title

      Social Neuroscience

      Volume: 17 Issue: 6 Pages: 544-557

    • DOI

      10.1080/17470919.2023.2166580

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Aberrant resting‐state functional connectivity of major depressive disorder with higher risk of suicide2022

    • Author(s)
      Ishikawa Kazuhiro、Nemoto Kiyotaka、Shiratori Yuki、Sodeyama Noriko、Kodama Kikuko、Usuniwa Hitoshi、Yamada Noriko、Yaguchi Chie、Hori Takafumi、Arai Tetsuaki、Tachikawa Hirokazu
    • Journal Title

      Psychiatry and Clinical Neurosciences Reports

      Volume: 1 Issue: 3

    • DOI

      10.1002/pcn5.35

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Dark Chocolate Intake May Reduce Fatigue and Mediate Cognitive Function and Gray Matter Volume in Healthy Middle-Aged Adults2022

    • Author(s)
      Nemoto Kiyotaka、Kokubun Keisuke、Ogata Yousuke、Koike Yasuharu、Arai Tetsuaki、Yamakawa Yoshinori
    • Journal Title

      Behavioural Neurology

      Volume: 2022 Pages: 1-8

    • DOI

      10.1155/2022/6021811

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Trends in Big Data Analyses by Multicenter Collaborative Translational Research in Psychiatry2022

    • Author(s)
      Toshiaki Onitsuka, Yoji Hirano, Kiyotaka Nemoto, Naoki Hashimoto, Itaru Kushima, Daisuke Koshiyama, Michihiko Koeda, Tsutomu Takahashi, Yoshihiro Noda, Junya Matsumoto, Kenichiro Miura, Takanobu Nakazawa, Takatoshi Hikida, Kiyoto Kasai, Norio Ozaki, Ryota Hashimoto
    • Journal Title

      Psychiatry and Clinical Neurosciences

      Volume: 76 Issue: 1 Pages: 1-14

    • DOI

      10.1111/pcn.13311

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Abnormal White Matter Microstructure in the Limbic System Is Associated With Tuberous Sclerosis Complex-Associated Neuropsychiatric Disorders2022

    • Author(s)
      Sato, Akemi Tominaga, Koji Iwatani, Yoshiko Kato, Yoko Wataya-Kaneda, Mari Makita, Kai Nemoto, Kiyotaka Taniike, Masako Kagitani-Shimono, Kuriko
    • Journal Title

      Frontiers in Neurology

      Volume: 13 Pages: 1-15

    • DOI

      10.3389/fneur.2022.782479

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Increased functional connectivity between presupplementary motor area and inferior frontal gyrus associated with the ability of motor response inhibition in obsessive-compulsive disorder.2021

    • Author(s)
      Tomiyama H, Murayama K, Nemoto K, Tomita M, Hasuzawa S, Mizobe, T, Kato K, Ohno A, Tsuruta S, Hiwatashi A, Nakao T
    • Journal Title

      Human Brain Mapping

      Volume: Nov 24 Issue: 3 Pages: 974-984

    • DOI

      10.1002/hbm.25699

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Grey-matter brain healthcare quotient and cognitive function: A large cohort study of an MRI brain screening system in Japan2021

    • Author(s)
      Watanabe Keita、Kakeda Shingo、Nemoto Kiyotaka、Onoda Keiichi、Yamaguchi Shuhei、Kobayashi Shotai、Yamakawa Yoshinori
    • Journal Title

      Cortex

      Volume: 145 Pages: 97-104

    • DOI

      10.1016/j.cortex.2021.09.009

    • Related Report
      2021 Research-status Report
    • Peer Reviewed
  • [Journal Article] Gymkhana and pylon slalom driving training effects on the cerebellum structure2021

    • Author(s)
      Shimizu Toshiyuki、Gheorghe Lucian A.、Nemoto Kiyotaka、Horie Tomohiko、Takano Susumu、Haida Munetaka
    • Journal Title

      Neuroscience Letters

      Volume: 765 Pages: 136281-136281

    • DOI

      10.1016/j.neulet.2021.136281

    • Related Report
      2021 Research-status Report
    • Peer Reviewed
  • [Presentation] 汎用性のあるBIDS変換システムの開発2023

    • Author(s)
      黒下彰喜、根本清貴、中山顕次郎、新井哲明
    • Organizer
      第25回日本ヒト脳機能マッピング学会
    • Related Report
      2022 Research-status Report
  • [Presentation] 画像統計解析入門2022

    • Author(s)
      根本清貴
    • Organizer
      第41回日本認知症学会学術集会/第37回日本老年精神医学会合同開催
    • Related Report
      2022 Research-status Report
    • Invited
  • [Presentation] 最先端の精神医学研究は精神疾患の診断法の開発にどこまで迫れるか? 精神疾患と脳構造画像:脳構造画像で精神疾患は分類できるのか?2022

    • Author(s)
      根本清貴
    • Organizer
      BPCNPNPPP4学会合同年会
    • Related Report
      2022 Research-status Report
  • [Remarks] 脳画像解析e-Learning

    • URL

      https://www.nemotos.net/?page_id=2436

    • Related Report
      2023 Annual Research Report
  • [Remarks] kn-scripts

    • URL

      https://gitlab.com/kytk/kn-scripts

    • Related Report
      2023 Annual Research Report
  • [Remarks] 脳画像解析eラーニング

    • URL

      https://www.nemotos.net/?page̲id=2436

    • Related Report
      2022 Research-status Report
  • [Remarks] 脳画像解析eラーニング

    • URL

      https://www.nemotos.net/?page_id=2436

    • Related Report
      2021 Research-status Report

URL: 

Published: 2021-04-28   Modified: 2025-01-30  

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