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A common and potentially prebiotic activating agent for phosphorylation of nucleosides and oligomerization of nucleotides and amino acids

Research Project

Project/Area Number 21K14029
Research Category

Grant-in-Aid for Early-Career Scientists

Allocation TypeMulti-year Fund
Review Section Basic Section 17050:Biogeosciences-related
Research InstitutionTokyo Institute of Technology

Principal Investigator

Yi Ruiqin  東京工業大学, 地球生命研究所, 研究員 (00860090)

Project Period (FY) 2021-04-01 – 2024-03-31
Project Status Completed (Fiscal Year 2023)
Budget Amount *help
¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Fiscal Year 2022: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2021: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
KeywordsThe Origins of Life / Amino acids / RNA / Peptides / Polymerzation / Activating Chemistry / amino acid / peptides / polymerization / chemical activation / nucleotides / amino acids / activating chemistry / peptide synthesis / RNA polymerization / solid-phase synthesis / activation chemistry / phosphorylation
Outline of Research at the Start

Recently, we proposed a “continuous reaction networks” model, and demonstrated that a wide variety of key precursors, useful for the synthesis of RNA monomers and amino acids, are constantly formed. The remaining key question of this model is whether this continuous reaction model can further enable the subsequent step towards RNA polymers generation compatible with forming other important substrates, such as oligopeptides. Therefore, this study aims for understanding how to generate RNA monomers, amino acids, as well as their polymers in a continuous manner under a single-pot environment.

Outline of Final Research Achievements

cyanogen chloride was proposed to activate the synthesis of RNA and peptides. In this research, the activation of nucleotides to their 5′-phosphorimidazoles for RNA polymerization and activation of amino acids to peptides has been demonstrated. The cyanogen chloride activated polymerization of amino acids in the solid-phase peptide synthesis was also demonstrated, which could be used for the peptide synthesis in the industry. The activation of nucleotides to their 5′-phosphorimidazoles for RNA polymerization and amino acids polymerization has been found to occur in a one-pot synthesis using cyanogen chloride as a common activating agent. These results suggest that cyanogen chloride is a very useful activating reagent in the prebiotic chemistry.

Academic Significance and Societal Importance of the Research Achievements

This study provides an understanding how RNA and peptides could evolve chemically starting from simple molecules to complex polymers under a one-single environment. The performed peptides synthesis affords an idea of the extension of the outcome from prebiotic chemistry to appliable chemistry.

Report

(4 results)
  • 2023 Annual Research Report   Final Research Report ( PDF )
  • 2022 Research-status Report
  • 2021 Research-status Report
  • Research Products

    (7 results)

All 2023 2022

All Journal Article (7 results) (of which Int'l Joint Research: 7 results,  Peer Reviewed: 7 results,  Open Access: 4 results)

  • [Journal Article] Spectroscopic and Biophysical Methods to Determine Differential Salt‐Uptake by Primitive Membraneless Polyester Microdroplets2023

    • Author(s)
      Chen Chen、Yi Ruiqin、Igisu Motoko、Sakaguchi Chie、Afrin Rehana、Potiszil Christian、Kunihiro Tak、Kobayashi Katsura、Nakamura Eizo、Ueno Yuichiro、Antunes Andre、Wang Anna、Chandru Kuhan、Hao Jihua、Jia Tony Z.
    • Journal Title

      Small Methods

      Volume: 7 Issue: 12 Pages: 2300119-2300119

    • DOI

      10.1002/smtd.202300119

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Carbonyl Migration in Uronates Affords a Potential Prebiotic Pathway for Pentose Production2023

    • Author(s)
      Yi Ruiqin、Mojica Mike、Fahrenbach Albert C.、James Cleaves H.、Krishnamurthy Ramanarayanan、Liotta Charles L.
    • Journal Title

      JACS Au

      Volume: 3 Issue: 9 Pages: 2522-2535

    • DOI

      10.1021/jacsau.3c00299

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Erythrose and Threose: Carbonyl Migrations, Epimerizations, Aldol, and Oxidative Fragmentation Reactions under Plausible Prebiotic Conditions2023

    • Author(s)
      Yi Ruiqin、Kern Ryan、Pollet Pamela、Lin Huacan、Krishnamurthy Ramanarayanan、Liotta Charles L.
    • Journal Title

      Chemistry A European Journal

      Volume: 29 Issue: 8

    • DOI

      10.1002/chem.202202816

    • Related Report
      2023 Annual Research Report 2022 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Towards a prebiotic chemoton nucleotide precursor synthesis driven by the autocatalytic formose reaction2023

    • Author(s)
      Tran Quoc Phuong、Yi Ruiqin、Fahrenbach Albert C.
    • Journal Title

      Chemical Science

      Volume: 14 Issue: 35 Pages: 9589-9599

    • DOI

      10.1039/d3sc03185c

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Alternating co-synthesis of glycol nucleic acid (GNA) monomers with dicarboxylic acids via drying2023

    • Author(s)
      Yi Ruiqin、Jia Tony Z.、Meringer Markus、Marshall Luke K.、Chen Chen、McGlynn Shawn Erin、Fahrenbach Albert C.、Cleaves H. James
    • Journal Title

      Chemical Communications

      Volume: 59 Issue: 45 Pages: 6865-6868

    • DOI

      10.1039/d2cc06818d

    • Related Report
      2023 Annual Research Report 2022 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] The Effects of Dehydration Temperature and Monomer Chirality on Primitive Polyester Synthesis and Microdroplet Assembly2022

    • Author(s)
      Afrin Rehana、Chen Chen、Sarpa Davide、Sithamparam Mahendran、Yi Ruiqin、Giri Chaitanya、Mamajanov Irena、Cleaves H. James、Chandru Kuhan、Jia Tony Z.
    • Journal Title

      Macromolecular Chemistry and Physics

      Volume: 223 Issue: 23 Pages: 2200235-2200235

    • DOI

      10.1002/macp.202200235

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A Physicochemical Consideration of Prebiotic Microenvironments for Self-Assembly and Prebiotic Chemistry2022

    • Author(s)
      Saha Arpita、Yi Ruiqin、Fahrenbach Albert C.、Wang Anna、Jia Tony Z.
    • Journal Title

      Life

      Volume: 12 Issue: 10 Pages: 1595-1595

    • DOI

      10.3390/life12101595

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Int'l Joint Research

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Published: 2021-04-28   Modified: 2025-01-30  

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