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Development of clinical-fit aptamer targeting CYP24A1 using an integrated approach of high-speed atomic force microscopy and molecular docking

Research Project

Project/Area Number 21K15239
Research Category

Grant-in-Aid for Early-Career Scientists

Allocation TypeMulti-year Fund
Review Section Basic Section 47020:Pharmaceutical analytical chemistry and physicochemistry-related
Research InstitutionKanazawa University

Principal Investigator

Biyani Madhu  金沢大学, ナノ生命科学研究所, 特任助教 (30882245)

Project Period (FY) 2021-04-01 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥4,680,000 (Direct Cost: ¥3,600,000、Indirect Cost: ¥1,080,000)
Fiscal Year 2022: ¥2,080,000 (Direct Cost: ¥1,600,000、Indirect Cost: ¥480,000)
Fiscal Year 2021: ¥2,600,000 (Direct Cost: ¥2,000,000、Indirect Cost: ¥600,000)
KeywordsCYP24 / Vitamin D3 / Aptamer / in vivo / A549 cells / HS-AFM / Molecular docking / CYP24A1
Outline of Research at the Start

The overexpression of CYP24A1 in cancer cells decreases the level of vitamin D3, which has the anti-proliferative effect. We identified a highly specific CYP24A1 inhibiting DNA aptamer by in vitro methods. This project will optimize the aptamer using HS-AFM in combination with molecular docking to develop as the potent and specific CYP24A1-inhibitor for cancer therapeutics.

Outline of Final Research Achievements

Aptamer Apt-7 has shown high binding affinity, specificity, and inhibitory potency against CYP24 as well as anti-proliferative ability in vitro and in cellular assays. Next, we evaluated Apt-7 by in vivo study. To enhance the nucleases resistance in vivo, we designed and developed a circular bivalent version of Apt-7, called Cb-7, and performed systematic studies of Cb-7. Cb-7 showed high nuclease stability with increased functional activity and remarkable anti-proliferative effects in lung cancer cell line A549 cells. As a preliminary test, we investigated Cb-7 in vivo. We established an evaluation system of a xenograft mouse model with A549 cells. 1,25D3 was administered intraperitoneally three times a week, while Cb-7 was administrated directly into the tumor three times a week only in the tumor of the left shoulder. As the result, the tumor volume of the left shoulder (with Cb-7) showed a tendency to decrease. However, further study is needed in the future.

Academic Significance and Societal Importance of the Research Achievements

The novel aptamer identified in this study presents an opportunity to generate a new probe for the recognition and inhibition of CYP24 for biomedical research and could assist in the diagnosis and treatment of cancer.

Report

(3 results)
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Research-status Report
  • Research Products

    (7 results)

All 2023 2022 2021

All Journal Article (2 results) (of which Int'l Joint Research: 2 results,  Peer Reviewed: 1 results,  Open Access: 2 results) Presentation (4 results) (of which Int'l Joint Research: 2 results,  Invited: 3 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Highlights from the 24th workshop on vitamin D in Austin, September 20222023

    • Author(s)
      Meyer Mark B.Biyani Madhu、Campbell Moray J.、Chaudhari Snehal N.、Christakos Sylvia、Ingles Sue A.、Knuth Megan M.、Lee Seong Min、Lisse Thomas S.、Liu Eva S.、Piec Isabelle、Plum Lori A.、Rao Sudhaker D.、Reynolds Carmen J.、Thacher Tom D.、White John H.、Cantorna Margherita T.
    • Journal Title

      The Journal of Steroid Biochemistry and Molecular Biology

      Volume: 228 Pages: 106247-106247

    • DOI

      10.1016/j.jsbmb.2023.106247

    • Related Report
      2022 Annual Research Report
    • Open Access / Int'l Joint Research
  • [Journal Article] Novel DNA Aptamer for CYP24A1 Inhibition with Enhanced Antiproliferative Activity in Cancer Cells2022

    • Author(s)
      Biyani Madhu、Yasuda Kaori、Isogai Yasuhiro、Okamoto Yuki、Weilin Wei、Kodera Noriyuki、Flechsig Holger、Sakaki Toshiyuki、Nakajima Miki、Biyani Manish
    • Journal Title

      ACS Applied Materials, and Interfaces

      Volume: 14 Issue: 16 Pages: 18064-18078

    • DOI

      10.1021/acsami.1c22965

    • Related Report
      2022 Annual Research Report 2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] Study of the binding mechanism of aptamer to CYP24A1 by an integrated approach of HS-AFM and molecular docking2021

    • Author(s)
      Madhu Biyani
    • Organizer
      The 36th JSSX Annual Meeting (2021)
    • Related Report
      2021 Research-status Report
    • Invited
  • [Presentation] In vitro selection of a DNA aptamer inhibiting human CYP24A12021

    • Author(s)
      Madhu Biyani
    • Organizer
      The 94th Japanese Biochemical Society (2021)
    • Related Report
      2021 Research-status Report
  • [Presentation] Integration of a high-speed atomic force microscopy and a computational microscopy: from selection hits to clinical leads2021

    • Author(s)
      Madhu Biyani
    • Organizer
      The 16th Anniversary India-Japan Fest, BICON2021, Virtual International Conference, Dec. 14-18, 2021
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] APPLICATIONS OF APTAMERS AS RESEARCH TOOLS: PROBLEMS AND SOLUTIONS2021

    • Author(s)
      Madhu Biyani
    • Organizer
      AICTE Training And Learning Academy (ATAL), Online Faculty Development Program (FDP) 2021
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research / Invited
  • [Patent(Industrial Property Rights)] 特願2021-0829042022

    • Inventor(s)
      Madhu, Yasuda, Manish
    • Industrial Property Rights Holder
      Madhu, Yasuda, Manish
    • Industrial Property Rights Type
      特許
    • Filing Date
      2022
    • Related Report
      2022 Annual Research Report

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Published: 2021-04-28   Modified: 2024-01-30  

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