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Enhancer based fine-tuning of Runx family for the regulation of HSC division during bone marrow recovery

Research Project

Project/Area Number 21K16272
Research Category

Grant-in-Aid for Early-Career Scientists

Allocation TypeMulti-year Fund
Review Section Basic Section 54010:Hematology and medical oncology-related
Research InstitutionKumamoto University

Principal Investigator

Ahmad Shah Adil Ishtiyaq  熊本大学, 国際先端医学研究機構, 客員助教 (80893833)

Project Period (FY) 2021-04-01 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2022: ¥2,340,000 (Direct Cost: ¥1,800,000、Indirect Cost: ¥540,000)
Fiscal Year 2021: ¥2,210,000 (Direct Cost: ¥1,700,000、Indirect Cost: ¥510,000)
Keywordsstem cells / hematopoietic stem cell / hematopoietic stem cells / bone marrow recovery / epigenetic regulation
Outline of Research at the Start

This project will depend mainly on the CRISPR-Cas9 based deletion of Runx protein enhancer sequences in HSCs. After confirmation of the functionality of each enhancer sequences, I will utilize the enhancer-deleted HSCs in bone marrow transplantation and bone marrow recovery studies to assess their involvement during bone marrow recovery process following 5-FU treatment. I will also analyze the differential epigenome regulation during bone marrow recovery process and clarify the involvement of Runx proteins by combining RNA-seq, ATAC-seq and Chip-seq analysis.

Outline of Final Research Achievements

I compared chromatin accessibility of Runx enhancers between self-renewal and differentiation types of HSCs after 5-FU administration by ATA-seq, and identified candidate regions of novel metabolic-epigenetic functional axis targeting RUNX enhancer sequences. Moreover, I confirm that these regions have H3K27 acetylation by CUT&Tag system. In addition, Runx3, which is related to differentiation, was highly expressed in EPCR Low HSCs, compared to EPCR High HSCs that is most primitive HSCs. Consistent with this results, the chromatin accessibility of enhancer regions that I identify by using HSCs obtained from 5-FU-treated mice was enhanced when EPCR high HSCs differentiate into EPCR low HSCs in vitro. These data suggest that I identify the enhancer regions of Runx3 that is important for the regulation of expression level in HSCs and this enhancer regions is involved in the differentiation of HSCs.

Academic Significance and Societal Importance of the Research Achievements

The achievement of my research may contribute to understanding the mechanism for the determination of HSC fate under proliferation conditions. So, this achievement may also contribute to the development for ex vivo expansion of HSCs.

Report

(3 results)
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Research-status Report
  • Research Products

    (1 results)

All 2022

All Journal Article (1 results) (of which Int'l Joint Research: 1 results,  Peer Reviewed: 1 results,  Open Access: 1 results)

  • [Journal Article] ATP citrate lyase controls hematopoietic stem cell fate and supports bone marrow regeneration2022

    • Author(s)
      Umemoto Terumasa、Johansson Alban、Ahmad Shah Adil Ishtiyaq、Hashimoto Michihiro、Kubota Sho、Kikuchi Kenta、Odaka Haruki、Era Takumi、Kurotaki Daisuke、Sashida Goro、Suda Toshio
    • Journal Title

      The EMBO Journal

      Volume: 41 Issue: 8 Pages: 1-20

    • DOI

      10.15252/embj.2021109463

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research

URL: 

Published: 2021-04-28   Modified: 2024-01-30  

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