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Large-scale Tomography Computation

Research Project

Project/Area Number 21K17750
Research Category

Grant-in-Aid for Early-Career Scientists

Allocation TypeMulti-year Fund
Review Section Basic Section 60090:High performance computing-related
Research InstitutionNational Institute of Advanced Industrial Science and Technology

Principal Investigator

陳 鵬  国立研究開発法人産業技術総合研究所, 情報・人間工学領域, 研究員 (30890199)

Project Period (FY) 2021-04-01 – 2025-03-31
Project Status Granted (Fiscal Year 2023)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2024: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2023: ¥1,040,000 (Direct Cost: ¥800,000、Indirect Cost: ¥240,000)
Fiscal Year 2022: ¥1,300,000 (Direct Cost: ¥1,000,000、Indirect Cost: ¥300,000)
Fiscal Year 2021: ¥1,170,000 (Direct Cost: ¥900,000、Indirect Cost: ¥270,000)
KeywordsGPGPU / Tensor Core / Supercomputer / Image reconstruction / Computed Tomography / MPI / Image Reconstruction / Filtered Back-projection / CPU / GPU / FPGA / Ptychography / HPC / Image Processing
Outline of Research at the Start

In this study, the applicant seeks to (1) design novel image reconstruction algorithms to push the frontier of high-resolution images with high image quality, and (2) explore the holy grail of high-resolution image reconstruction: real-time reconstruction of 3D volumes for CT scans.

Outline of Annual Research Achievements

To achieve large-scale tomographic imaging, we leverage cutting-edge technology, such as Nvidia GPUs and Tensor Cores, to tackle the challenge of producing high-resolution images. While traditional methods rely on supercomputers and are time-consuming, our goal is to achieve rapid and accurate results, even on smaller systems. Our innovative approach utilizes special GPU features, including Tensor Cores, to accelerate image generation without compromising quality. Additionally, we develop a system that enables multiple GPUs to collaborate, further enhancing image processing speed. Evaluations demonstrate that our approach significantly outperforms conventional methods, even with large datasets. In summary, our work effectively meets the demands of modern imaging technology.

Current Status of Research Progress
Current Status of Research Progress

2: Research has progressed on the whole more than it was originally planned.

Reason

To achieve large-scale tomographic imaging, we utilize advanced Nvidia GPUs and Tensor Cores for rapid generation of high-resolution images. While traditional methods rely on supercomputers and are slow, our approach operates efficiently, even on smaller systems, such as 8 Nvidia A100 GPUs. By harnessing the power of GPUs, we expedite image generation without compromising quality. Our system facilitates collaboration among multiple GPUs, further enhancing processing speed. This proven method has garnered recognition in esteemed conferences and journals. In conclusion, our innovative use of Nvidia GPUs and Tensor Cores establishes a new benchmark for large-scale high-resolution tomographic imaging. Our solution is not only faster but also more efficient compared to traditional methods.

Strategy for Future Research Activity

Our goal is to enhance image reconstruction by optimizing computing kernels using supercomputers and various accelerators, achieving superior computational and power efficiency. We will continually leverage the latest accelerators, such as Nvidia GPUs, AMD GPUs, and FPGAs, to optimize computing kernels. Additionally, we will utilize state-of-the-art supercomputers like Fugaku and ABCI to enhance the computing capabilities for large-scale image reconstruction.

Report

(3 results)
  • 2023 Research-status Report
  • 2022 Research-status Report
  • 2021 Research-status Report
  • Research Products

    (36 results)

All 2024 2023 2022 2021 Other

All Int'l Joint Research (2 results) Journal Article (15 results) (of which Int'l Joint Research: 12 results,  Peer Reviewed: 10 results,  Open Access: 13 results) Presentation (17 results) (of which Int'l Joint Research: 10 results,  Invited: 16 results) Funded Workshop (2 results)

  • [Int'l Joint Research] Oak Ridge National Laboratory(米国)

    • Related Report
      2023 Research-status Report
  • [Int'l Joint Research] A*STAR(シンガポール)

    • Related Report
      2023 Research-status Report
  • [Journal Article] Evolutionary Architecture Search for Generative Adversarial Networks Based On Weight Sharing2024

    • Author(s)
      Xue Yu、Tong Weinan、Neri Ferrante、Chen Peng、Luo Tao、Zhen Liangli、Wang Xiao
    • Journal Title

      IEEE Transactions on Evolutionary Computation

      Volume: 1 Issue: 3 Pages: 1-1

    • DOI

      10.1109/tevc.2023.3338371

    • Related Report
      2023 Research-status Report
  • [Journal Article] PERKS: a Locality-Optimized Execution Model for Iterative Memory-bound GPU Applications2023

    • Author(s)
      Zhang Lingqi、Wahib Mohamed、Chen Peng、Meng Jintao、Wang Xiao、Endo Toshio、Matsuoka Satoshi
    • Journal Title

      ICS '23: Proceedings of the 37th International Conference on Supercomputing

      Volume: 1 Pages: 2767-2782

    • DOI

      10.1145/3577193.3593705

    • Related Report
      2023 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Revisiting Temporal Blocking Stencil Optimizations2023

    • Author(s)
      Zhang Lingqi、Wahib Mohamed、Chen Peng、Meng Jintao、Wang Xiao、Endo Toshio、Matsuoka Satoshi
    • Journal Title

      ICS '23: Proceedings of the 37th International Conference on Supercomputing

      Volume: 1 Pages: 2767-2782

    • DOI

      10.1145/3577193.3593716

    • Related Report
      2023 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Simeuro: A Hybrid CPU-GPU Parallel Simulator for Neuromorphic Computing Chips2023

    • Author(s)
      Zhang Huaipeng、Ho Nhut-Minh、Polat Dogukan Yigit、Chen Peng、Wahib Mohamed、Nguyen Truong Thao、Meng Jintao、Goh Rick Siow Mong、Matsuoka Satoshi、Luo Tao、Wong Weng-Fai
    • Journal Title

      IEEE Transactions on Parallel and Distributed Systems

      Volume: 34 Issue: 10 Pages: 2767-2782

    • DOI

      10.1109/tpds.2023.3291795

    • Related Report
      2023 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] At the locus of performance: a case study in enhancing CPUs with copious 3D-stacked cache2023

    • Author(s)
      Jens Domke, Emil Vatai, Balazs Gerofi, Yuetsu Kodama、Mohamed Wahib, Artur Podobas, Sparsh Mittal, Miquel Perics, Lingqi Zhang, Peng Chen, Aleksandr Drozd, Satoshi Matsuoka
    • Journal Title

      ACM Transactions on Architecture and Code Optimization (TACO)

      Volume: 1 Pages: 2767-2782

    • Related Report
      2023 Research-status Report
  • [Journal Article] FPGAを用いたCT画像のバックプロジェクション処理の高速化に向けて2023

    • Author(s)
      真野淳平, 宮島敬明, 陳 鵬, Mohamed Wahib, 佐野健太郎
    • Journal Title

      第201回システムとLSIの設計技術研究発表会

      Volume: 2023-SLDM-201 Pages: 1-2

    • Related Report
      2022 Research-status Report
    • Open Access
  • [Journal Article] Exploiting Scratchpad Memory for Deep Temporal Blocking2023

    • Author(s)
      Lingqi Zhang, Mohamed Wahib, Peng Chen, Jintao Meng, Xiao Wang, Toshio Endo, Satoshi Matsuoka
    • Journal Title

      GPGPU 2023 workshop

      Volume: 8 Pages: 1-2

    • Related Report
      2022 Research-status Report
    • Open Access / Int'l Joint Research
  • [Journal Article] Breaking the Memory Bottleneck for Iterative Memory-bound Applications Via Persistent Kernels2023

    • Author(s)
      Lingqi Zhang, Mohamed Wahib, Peng Chen, Jintao Meng, Xiao Wang, Toshio Endo, Satoshi Matsuoka
    • Journal Title

      第188回ハイパフォーマンスコンピューティング研究発表会

      Volume: 8 Pages: 1-8

    • Related Report
      2022 Research-status Report
    • Open Access / Int'l Joint Research
  • [Journal Article] Image Gradient Decomposition for Parallel and Memory-Efficient Ptychographic Reconstruction2022

    • Author(s)
      Xiao Wang, Aristeidis Tsaris, Debangshu Mukherjee, Mohamed Wahib, Peng Chen, Mark Oxley, Olga Ovchinnikova, Jacob Hinkle
    • Journal Title

      Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis (SC'22)

      Volume: 8 Pages: 1-13

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Automatic Generation of High-Performance Convolution Kernels on ARM CPUs for Deep Learning2022

    • Author(s)
      Meng Jintao、Zhuang Chen、Chen Peng、Wahib Mohamed、Schmidt Bertil、Wang Xiao、Lan Haidong、Wu Dou、Deng Minwen、Wei Yanjie、Feng Shenzhong
    • Journal Title

      IEEE Transactions on Parallel and Distributed Systems

      Volume: - Issue: 11 Pages: 1-15

    • DOI

      10.1109/tpds.2022.3146257

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Boosting the predictive performance with aqueous solubility dataset curation2022

    • Author(s)
      Meng Jintao、Chen Peng、Wahib Mohamed、Yang Mingjun、Zheng Liangzhen、Wei Yanjie、Feng Shengzhong、Liu Wei
    • Journal Title

      Scientific Data

      Volume: 9 Issue: 1

    • DOI

      10.1038/s41597-022-01154-3

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Performance portable back-projection algorithms on CPUs2021

    • Author(s)
      Chen Peng、Wahib Mohamed、Wang Xiao、Takizawa Shinichiro、Hirofuchi Takahiro、Ogawa Hirotaka、Matsuoka Satoshi
    • Journal Title

      ICS '21: Proceedings of the ACM International Conference on SupercomputingJune 2021

      Volume: - Pages: 1-1

    • DOI

      10.1145/3447818.3460353

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Scalable FBP decomposition for cone-beam CT reconstruction2021

    • Author(s)
      Chen Peng、Wahib Mohamed、Wang Xiao、Hirofuchi Takahiro、Ogawa Hirotaka、Biguri Ander、Boardman Richard、Blumensath Thomas、Matsuoka Satoshi
    • Journal Title

      SC '21: Proceedings of the International Conference for High Performance Computing, Networking, Storage and AnalysisNovember 2021

      Volume: - Pages: 1-16

    • DOI

      10.1145/3458817.3476139

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] 特集 映像情報処理のための高性能計算基盤2021

    • Author(s)
      Chen Peng、Mohamed Wahib, Yusuke Tanimura, Hirotaka Ogawa, Satoshi Matsuoka
    • Journal Title

      映像情報メディア学会誌

      Volume: 75 (5) Pages: 597-602

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Matrix Engines for High Performance Computing: A Paragon of Performance or Grasping at Straws?2021

    • Author(s)
      Domke Jens、Vatai Emil、Drozd Aleksandr、Chen Peng、Oyama Yosuke、Zhang Lingqi、Salaria Shweta、Mukunoki Daichi、Podobas Artur、Wahib Mohamed、Matsuoka Satoshi
    • Journal Title

      2021 IEEE International Parallel and Distributed Processing Symposium (IPDPS)

      Volume: - Pages: 1056-1065

    • DOI

      10.1109/ipdps49936.2021.00114

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] High Throughput 3D Image Reconstruction with GPUDirect and Tensor Core2024

    • Author(s)
      Wu Du, Peng Chen, Miyajima Takaaki, Endo Toshio, Matsuoka, Satoshi, Wahib Mohamed
    • Organizer
      IPSJ HPC-193
    • Related Report
      2023 Research-status Report
    • Invited
  • [Presentation] Optimizing Matrix Multiplication on Arm Architectures2024

    • Author(s)
      Du Wu, Peng Chen, Toshio Endo, Satoshi Matsuoka, Mohamed Wahib
    • Organizer
      The 6th R-CCS International Symposium
    • Related Report
      2023 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Efficient Edge-Cloud Computing and Communication Platform2024

    • Author(s)
      Peng Chen, Yiyu Tan, Du Wu, Mohamed Wahib, Yusuke Tanimura
    • Organizer
      The 6th R-CCS International Symposium
    • Related Report
      2023 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] General and Scalable Framework for GCN Training on CPU-powered Supercomputers2024

    • Author(s)
      Chen Zhuang, Peng Chen, Xin Liu, Toshio Endo, Mohamed Wahib
    • Organizer
      The 6th R-CCS International Symposium
    • Related Report
      2023 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Efficient Distributed Sequence Parallelism for Transformer-based Image Segmentation2024

    • Author(s)
      Isaac Lyngaas, Murali Gopalakrishnan Meena, Evan Calabrese, Mohamed Wahib, Peng Chen, Jun Igarashi, Xiao Wang
    • Organizer
      Electronic Imaging 2024
    • Related Report
      2023 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] High-performance Data Loader for Large-scale Data Processing2024

    • Author(s)
      Edgar Josafat Martinez-Noriega, Peng Chen
    • Organizer
      Electronic Imaging 2024
    • Related Report
      2023 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Back-Projection Optimization: The Key to Tomographic Imaging2024

    • Author(s)
      Peng Chen
    • Organizer
      Electronic Imaging 2024
    • Related Report
      2023 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Optimizing Matrix Multiplication on Arm Architectures2023

    • Author(s)
      Wu Du, Peng Chen, Endo Toshio, Matsuoka Satoshi, Wahib Mohamed
    • Organizer
      IPSJ HPC-192
    • Related Report
      2023 Research-status Report
    • Invited
  • [Presentation] Scalable Training of Graph Convolutional Networks on Supercomputers2023

    • Author(s)
      Chen Zhuang, Peng Chen, Xin Liu, Satoshi Matsuoka, Toshio Endo, Mohamed Wahib
    • Organizer
      SWOPP2023
    • Related Report
      2023 Research-status Report
    • Invited
  • [Presentation] High-performance Temporal Blocking Stencils at Low GPU Occupancy2023

    • Author(s)
      Lingqi Zhang, Mohamed Wahib, Peng Chen, Yusuke Tanimura, Toshio Endo, Satoshi Matsuoka
    • Organizer
      SWOPP2023
    • Related Report
      2023 Research-status Report
    • Invited
  • [Presentation] Exploiting Scratchpad Memory for Deep Temporal Blocking2023

    • Author(s)
      Lingqi Zhang, Mohamed Wahib, Peng Chen, Jintao Meng, Xiao Wang, Toshio Endo, Satoshi Matsuoka
    • Organizer
      GPGPU 2023 workshop
    • Related Report
      2022 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Breaking the Memory Bottleneck for Iterative Memory-bound Applications Via Persistent Kernels2023

    • Author(s)
      Lingqi Zhang, Mohamed Wahib, Peng Chen, Jintao Meng, Xiao Wang, Toshio Endo, Satoshi Matsuoka
    • Organizer
      第188回ハイパフォーマンスコンピューティング研究発表会
    • Related Report
      2022 Research-status Report
  • [Presentation] High-performance image reconstruction on GPU-accelerated supercomputers2023

    • Author(s)
      Peng Chen
    • Organizer
      Electronic Imaging 2023
    • Related Report
      2022 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Image Gradient Decomposition for Parallel and Memory-Efficient Ptychographic Reconstruction2022

    • Author(s)
      Xiao Wang, Aristeidis Tsaris, Debangshu Mukherjee, Mohamed Wahib, Peng Chen, Mark Oxley, Olga Ovchinnikova, Jacob Hinkle
    • Organizer
      Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis (SC'22)
    • Related Report
      2022 Research-status Report
    • Invited
  • [Presentation] FPGAを用いたCT画像のバックプロジェクション処理の高速化に向けて2022

    • Author(s)
      真野淳平, 宮島敬明, 陳 鵬, Mohamed Wahib, 佐野健太郎
    • Organizer
      第201回システムとLSIの設計技術研究発表会
    • Related Report
      2022 Research-status Report
    • Invited
  • [Presentation] Performance portable back-projection algorithms on CPUs2021

    • Author(s)
      Chen Peng、Wahib Mohamed、Wang Xiao、Takizawa Shinichiro、Hirofuchi Takahiro、Ogawa Hirotaka、Matsuoka Satoshi
    • Organizer
      ICS '21: Proceedings of the ACM International Conference on SupercomputingJune 2021
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] Scalable FBP decomposition for cone-beam CT reconstruction2021

    • Author(s)
      Chen Peng、Wahib Mohamed、Wang Xiao、Hirofuchi Takahiro、Ogawa Hirotaka、Biguri Ander、Boardman Richard、Blumensath Thomas、Matsuoka Satoshi
    • Organizer
      SC '21: Proceedings of the International Conference for High Performance Computing, Networking, Storage and AnalysisNovember 2021
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research / Invited
  • [Funded Workshop] ICS '21: Proceedings of the ACM International Conference on SupercomputingJune 20212021

    • Related Report
      2021 Research-status Report
  • [Funded Workshop] SC '21: Proceedings of the International Conference for High Performance Computing, Networking, Storage and AnalysisNovember 20212021

    • Related Report
      2021 Research-status Report

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Published: 2021-04-28   Modified: 2024-12-25  

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