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Development of artificial intelligence assisted Raman microscopy for reliable and automated examination of urine sediment

Research Project

Project/Area Number 21K18081
Research Category

Grant-in-Aid for Early-Career Scientists

Allocation TypeMulti-year Fund
Review Section Basic Section 90130:Medical systems-related
Research InstitutionShimane University

Principal Investigator

Noothalapati Hemanth  島根大学, 学術研究院農生命科学系, 助教 (30748025)

Project Period (FY) 2021-04-01 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2022: ¥1,430,000 (Direct Cost: ¥1,100,000、Indirect Cost: ¥330,000)
Fiscal Year 2021: ¥3,120,000 (Direct Cost: ¥2,400,000、Indirect Cost: ¥720,000)
KeywordsRaman Spectroscopy / Single cell analysis / Disease diagnostics / Molecular imaging / Artificial Intelligence / Machine learning / Explainable AI / Raman spectroscopy / Urinalysis / Urine sediment analysis / Artificial intelligence / disease diagnosis / machine learning / MCR-ALS / multivariate analysis
Outline of Research at the Start

Urine sediment microscopy is vital in accurate diagnosis of kidney and urinary tract diseases. It is not universally adopted because it is time-consuming, expensive and requires specially trained personnel. Automation can solve the problem. But current efforts rely only on morphological changes which fail to identify many components. Raman spectroscopy relies on molecular information and has demonstrated excellent classification of various biomaterials. In this research, I propose to elucidate the potential of artificial intelligence assisted Raman microscopic examination of urine sediment.

Outline of Final Research Achievements

Urine is a rich body fluid with over 3,000 metabolites. Determining exact composition of urine, its collection and storage are difficult and expensive. During the development of new modalities of urinalysis, therefore, artificial urine has many advantages as it is both practical and fast to obtain over human urine for research and educational purposes. In this work, we investigated several formulations and examined suitability of artificial urine for the development of AI assisted Raman spectroscopy based urinalysis. Raman spectra were measured using both portable Raman spectrometer and a Raman micro-spectrometer under liquid or air-dried conditions. By optimizing several experimental parameters, we realized artificial urine spectra that matched well with standard human urine. We believe this formulation of AU can be used to replace human urine during development of Raman spectroscopy based urinalysis successfully.

Academic Significance and Societal Importance of the Research Achievements

Human urine flows through kidneys, ureters, bladder, urethra etc. and it accurately reflects change in all the organs. Separate screening tests are done for each disease. Proposed urinalysis by Raman microscopy helps to screen multiple conditions in one step, reduce cost/time and contribute to SDG3

Report

(3 results)
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Research-status Report
  • Research Products

    (21 results)

All 2023 2022 2021 Other

All Int'l Joint Research (2 results) Journal Article (8 results) (of which Int'l Joint Research: 6 results,  Peer Reviewed: 8 results,  Open Access: 6 results) Presentation (11 results) (of which Int'l Joint Research: 7 results,  Invited: 4 results)

  • [Int'l Joint Research] ACTREC, Tata Memorial Centre/Manipal Academy of Higher Education/SRM University AP, Amaravati(インド)

    • Related Report
      2022 Annual Research Report
  • [Int'l Joint Research] ACTREC, Tata Memorial Center, Mumbai(インド)

    • Related Report
      2021 Research-status Report
  • [Journal Article] Removal of hemolysis interference in serum Raman spectroscopy by multivariate curve resolution analysis for accurate classification of oral cancers2023

    • Author(s)
      Anjikar Ajinkya、Jadhav Priyanka、Hole Arti、Paneerselvam Rajapandian、Ingle Arvind、Yamamoto Tatsuyuki、Noothalapati Hemanth、C. Murali Krishna
    • Journal Title

      Sensors & Diagnostics

      Volume: 2 Issue: 2 Pages: 390-397

    • DOI

      10.1039/d2sd00137c

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Development of In-situ Raman Diagnosis Technique of Eosinophil Esophagitis2023

    • Author(s)
      Riki Zakaria, Bibin.B. Andria, Takumu Watanabe, AnisaMaryani, Pradjna N.Paramitha, Yasmi P.Kuntana, Yukako Kusaka, Hemanth Noothalapati, Keita Iwasaki, Naoki Oshima, Kosuke Hashimoto, Hiroko Matsuyoshi, Shunji Ishihara, Tatsuyuki Yamamoto, Hidetoshi Sato
    • Journal Title

      Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy

      Volume: 285 Pages: 121804-121804

    • DOI

      10.1016/j.saa.2022.121804

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Co-ingestion with γ-cyclodextrin improves bioavailability of α-linolenic acid in Perilla frutescens seed oil2023

    • Author(s)
      Yoshikiyo Keisuke、Takahashi Miho、Narumiya Yu、Honda Mikito、Iwasaki Keita、Ishigaki Mika、Nagato Edward G.、Noothalapati Hemanth、Shimizu Hidehisa、Murota Kaeko、Yamamoto Tatsuyuki
    • Journal Title

      Food Hydrocolloids for Health

      Volume: 3 Pages: 100116-100116

    • DOI

      10.1016/j.fhfh.2023.100116

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Salivary Raman spectroscopy: Understanding alterations in saliva of tobacco habitu?s and oral cancer subjects2022

    • Author(s)
      Hole Arti、Jadhav Priyanka、Pansare Kshama、Noothalapati Hemanth、Deshmukh Atul、Gota Vikram、Chaturvedi Pankaj、Krishna C. Murali
    • Journal Title

      Vibrational Spectroscopy

      Volume: 122 Pages: 103414-103414

    • DOI

      10.1016/j.vibspec.2022.103414

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Raman spectroscopy for microplastic detection in water sources: a systematic review2022

    • Author(s)
      Chakraborty I.、Banik S.、Biswas R.、Yamamoto T.、Noothalapati H.、Mazumder N.
    • Journal Title

      International Journal of Environmental Science and Technology

      Volume: 0 Issue: 9 Pages: 1-14

    • DOI

      10.1007/s13762-022-04505-0

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Microfluidics and surface-enhanced Raman spectroscopy, a win?win combination?2022

    • Author(s)
      Panneerselvam Rajapandiyan、Sadat Hasan、Hohn Eva-Maria、Das Anish、Noothalapati Hemanth、Belder Detlev
    • Journal Title

      Lab on a Chip

      Volume: 22 Issue: 4 Pages: 665-682

    • DOI

      10.1039/d1lc01097b

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Non-invasive diagnosis of colorectal cancer by Raman spectroscopy: Recent developments in liquid biopsy and endoscopy approaches2021

    • Author(s)
      Noothalapati Hemanth、Iwasaki Keita、Yamamoto Tatsuyuki
    • Journal Title

      Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy

      Volume: 258 Pages: 119818-119818

    • DOI

      10.1016/j.saa.2021.119818

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] DNA Fingerprint Analysis of Raman Spectra Captures Global Genomic Alterations in Imatinib-Resistant Chronic Myeloid Leukemia: A Potential Single Assay for Screening Imatinib Resistance2021

    • Author(s)
      Mojidra Rahul、Hole Arti、Iwasaki Keita、Noothalapati Hemanth、Yamamoto Tatsuyuki、C Murali Krishna、Govekar Rukmini
    • Journal Title

      Cells

      Volume: 10 Issue: 10 Pages: 2506-2506

    • DOI

      10.3390/cells10102506

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Presentation] Explainable AI assisted identification of molecular signatures in Raman spectroscopy for reliable and automated classification of cancer cells2023

    • Author(s)
      H. Noothalapati
    • Organizer
      American Chemical Society Spring Meeting
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Artificial intelligence assisted Raman spectroscopy for reliable classification of cancer cells2022

    • Author(s)
      H. Noothalapati, A. Anjikar and T. Yamamoto
    • Organizer
      International Conference on Nanoscience and Photonics for Medical Applications
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] Visualizing cell wall dynamics during yeast sporulation process by Raman microspectroscopy and MCR-ALS technique2022

    • Author(s)
      H. Noothalapati, H.M. Imrul and T. Yamamoto
    • Organizer
      27th International Conference on Raman Spectroscopy
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research
  • [Presentation] Label-free analysis of single cells by Raman microspectroscopy2022

    • Author(s)
      H. Noothalapati
    • Organizer
      4th Meeting on Biometrics of redox, oxidative stress and phytochemicals
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] Raman microspectroscopy: From single cell imaging to diagnostics2022

    • Author(s)
      H. Noothalapati
    • Organizer
      第28回中国四国支部分析化学若手セミナー
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] Label-free visualization of fungal cell and spore wall architecture by confocal Raman microscopy2021

    • Author(s)
      Hemanth Noothalapati and Tatsuyuki Yamamoto
    • Organizer
      American Chemical Society Spring 2021
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research
  • [Presentation] MCR-ALS assisted identification of spectral markers for objective discrimination of breast cancer from mammary epithelial cells by Raman microspectroscopy2021

    • Author(s)
      Hemanth Noothalapati, Keita Iwasaki, Asuka Araki, Tatsuyuki Yamamoto, Riruke Maruyama
    • Organizer
      11th International Conference on Advanced Vibrational Spectroscopy
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research
  • [Presentation] Raman Microspectrocopy: From label-free single cell imaging to disease diagnosis2021

    • Author(s)
      Hemanth Noothalapati and Tatsuyuki Yamamoto
    • Organizer
      Indo-Japan Sakura Science Program
    • Related Report
      2021 Research-status Report
    • Invited
  • [Presentation] Machine learning assisted Raman microspectroscopy for objective discrimination of breast cancer cells from normal mammary epithelial cells2021

    • Author(s)
      Hemanth Noothalapati, Keita Iwasaki, Ajinkya Anjikar, Asuka Araki, Riruke Maruyama, Tatsuyuki Yamamoto
    • Organizer
      Saratov Fall Meeting SFM'21 & 9th International Symposium on Optics and Biophotonics
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research
  • [Presentation] Accurate classification of breast cancer cells from normal mammary epithelial cells by machine learning assisted Raman microspectroscopy2021

    • Author(s)
      Hemanth Noothalapati, Keita Iwasaki, Ajinkya Anjikar, Asuka Araki, Riruke Maruyama, Tatsuyuki Yamamoto
    • Organizer
      12th International Symposium of Indian Scientist Association in Japan
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research
  • [Presentation] Objective discrimination of drug resistant cells in chronic myeloid leukemia by Raman spectroscopy and multivariate curve resolution analysis2021

    • Author(s)
      Hemanth Noothalapati, Rahul Mojidra, Arti Hole, Keita Iwasaki, Tatsuyuki Yamamoto, Murali Krishna C and Rukmini Govekar
    • Organizer
      第 19 回医用分光学研究会
    • Related Report
      2021 Research-status Report

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Published: 2021-04-28   Modified: 2024-01-30  

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