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Elucidating the molecular mechanism of herbal medicine by the advances in computational mass spectrometry

Research Project

Project/Area Number 21K18216
Research Category

Grant-in-Aid for Challenging Research (Pioneering)

Allocation TypeMulti-year Fund
Review Section Medium-sized Section 37:Biomolecular chemistry and related fields
Research InstitutionTokyo University of Agriculture and Technology

Principal Investigator

Tsugawa Hiroshi  東京農工大学, 工学(系)研究科(研究院), 准教授 (30647235)

Co-Investigator(Kenkyū-buntansha) 今見 考志  国立研究開発法人理化学研究所, 生命医科学研究センター, ユニットリーダー (30528344)
Project Period (FY) 2021-07-09 – 2024-03-31
Project Status Completed (Fiscal Year 2023)
Budget Amount *help
¥26,000,000 (Direct Cost: ¥20,000,000、Indirect Cost: ¥6,000,000)
Fiscal Year 2023: ¥7,800,000 (Direct Cost: ¥6,000,000、Indirect Cost: ¥1,800,000)
Fiscal Year 2022: ¥9,100,000 (Direct Cost: ¥7,000,000、Indirect Cost: ¥2,100,000)
Fiscal Year 2021: ¥9,100,000 (Direct Cost: ¥7,000,000、Indirect Cost: ¥2,100,000)
Keywordsオミクス / 質量分析 / 情報科学 / メタボロミクス / 生薬 / マルチオミクス / 統合オミクス / インフォマティクス / 天然物化学 / システムバイオロジー / 質量分析インフォマティクス / メタボローム / データサイエンス / プロテオーム
Outline of Research at the Start

本研究では、各階層のオミクス科学を「質量分析インフォマティクス」という概念で総合的に捉え、代謝統合オミクスのスループット及びアノテーション率の革新的向上を行い、生命代謝システムの深層理解を目指す挑戦的開拓研究を遂行する。そして構築される基盤技術を用いることで、生薬・漢方薬の科学的根拠を分子レベルで解明し、植物とヒトとの関わりを紐解く代謝オミクス科学を展開する。

Outline of Final Research Achievements

Through the technological development of mass spectrometry informatics, we aimed to establish an integrated omics environment and conducted research to elucidate the molecular mechanisms underlying the pharmacological effects of the herbal medicine licorice. Specifically, we used an acute inflammation model with macrophage-derived RAW264.7 cells and lipopolysaccharide (LPS) and evaluated the anti-inflammatory effects of adding either isoliquiritigenin (ILG) or a licorice extract (GU). In the process, we developed a new method for measuring hydrophilic metabolome and the results are currently being submitted for publication. In addition, we integrated the acquired omics data to discover pathways that vary specifically with ILG and those that vary specifically with GU.

Academic Significance and Societal Importance of the Research Achievements

本研究では、質量分析オミクスのデータ科学を活用し、生薬・漢方薬の効果が分子レベルでどのように発揮されるかを解明することを目指した。これにより、西洋医学と東洋医学の融合を推進する基礎的データが得られ、植物資源の価値を高めるとともに、漢方薬の品質評価や予防医学への応用が可能となる。さらに、新規生体分子の同定や生理活性の評価を通じて、創薬の新たなシーズを探るという革新的なアプローチも展開できる可能性がある。この研究は国際的な「持続可能な開発目標」(SDGs)への貢献を目指すとともに、将来的にはすべての薬用植物に適用可能な研究成果を提供し、薬学・医学研究の進展を支える基盤となり得る。

Report

(5 results)
  • 2023 Annual Research Report   Final Research Report ( PDF )
  • 2022 Research-status Report
  • 2021 Comments on the Screening Results   Research-status Report
  • Research Products

    (16 results)

All 2024 2022 2021 Other

All Journal Article (12 results) (of which Int'l Joint Research: 6 results,  Peer Reviewed: 10 results,  Open Access: 10 results) Book (1 results) Remarks (3 results)

  • [Journal Article] A lipidome landscape of aging in mice2024

    • Author(s)
      Tsugawa Hiroshi、Ishihara Tomoaki、Ogasa Kota、Iwanami Seigo、Hori Aya、Takahashi Mikiko、Yamada Yutaka、Satoh-Takayama Naoko、Ohno Hiroshi、Minoda Aki、Arita Makoto
    • Journal Title

      Nature Aging

      Volume: 4 Issue: 5 Pages: 709-726

    • DOI

      10.1038/s43587-024-00610-6

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Multiomics analysis to explore blood metabolite biomarkers in an Alzheimer’s Disease Neuroimaging Initiative cohort2024

    • Author(s)
      Oka Takaki、Matsuzawa Yuki、Tsuneyoshi Momoka、Nakamura Yoshitaka、Aoshima Ken、Tsugawa Hiroshi
    • Journal Title

      Scientific Reports

      Volume: 14 Issue: 1 Pages: 6797-6797

    • DOI

      10.1038/s41598-024-56837-1

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Using Data-Dependent and -Independent Hybrid Acquisitions for Fast Liquid Chromatography-Based Untargeted Lipidomics2024

    • Author(s)
      Tokiyoshi Kanako、Matsuzawa Yuki、Takahashi Mikiko、Takeda Hiroaki、Hasegawa Mayu、Miyamoto Junki、Tsugawa Hiroshi
    • Journal Title

      Analytical Chemistry

      Volume: 96 Issue: 3 Pages: 991-996

    • DOI

      10.1021/acs.analchem.3c04400

    • Related Report
      2023 Annual Research Report
    • Peer Reviewed
  • [Journal Article] MS-DIAL 5 multimodal mass spectrometry data mining unveils lipidome complexities2024

    • Author(s)
      Takeda Hiroaki、Matsuzawa Yuki et al.
    • Journal Title

      bioRxiv

      Volume: 0 Pages: 0-0

    • DOI

      10.1101/2024.02.07.579267

    • Related Report
      2023 Annual Research Report
    • Open Access / Int'l Joint Research
  • [Journal Article] Using variable data independent acquisition for capillary electrophoresis-based untargeted metabolomics2024

    • Author(s)
      Kiuchi Saki、Otoguro Yasuhiro、Nitta Tomoaki、Chung Mi Hwa、Nakaya Taiki、Matsuzawa Yuki、Oobuchi Katsuya、Sasaki Kazunori、Yamamoto Hiroyuki、Tsugawa Hiroshi
    • Journal Title

      bioRxiv

      Volume: 0 Pages: 0-0

    • DOI

      10.1101/2024.01.17.576157

    • Related Report
      2023 Annual Research Report
    • Open Access
  • [Journal Article] Guiding the choice of informatics software and tools for lipidomics research applications2022

    • Author(s)
      Ni Zhixu et al.
    • Journal Title

      Nature Methods

      Volume: 20 Issue: 2 Pages: 193-204

    • DOI

      10.1038/s41592-022-01710-0

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Computational mass spectrometry accelerates C=C position-resolved untargeted lipidomics using oxygen attachment dissociation2022

    • Author(s)
      Uchino Haruki、Tsugawa Hiroshi、Takahashi Hidenori、Arita Makoto
    • Journal Title

      Communications Chemistry

      Volume: 5 Issue: 1 Pages: 162-162

    • DOI

      10.1038/s42004-022-00778-1

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Bioinformatics in bioscience and bioengineering: Recent advances, applications, and perspectives2022

    • Author(s)
      Uesaka Kazuma、Oka Hiroya、Kato Ryuji、Kanie Kei、Kojima Takaaki、Tsugawa Hiroshi、Toda Yosuke、Horinouchi Takaaki
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: 134 Issue: 5 Pages: 363-373

    • DOI

      10.1016/j.jbiosc.2022.08.004

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Pleiotropic Roles of Cholesteryl Sulfate during Entamoeba Encystation: Involvement in Cell Rounding and Development of Membrane Impermeability2022

    • Author(s)
      Mi-Ichi F, Tsugawa H, Arita M, Yoshida H.
    • Journal Title

      mSphere

      Volume: 7 Issue: 4 Pages: 431-431

    • DOI

      10.1128/msphere.00299-22

    • Related Report
      2022 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Defining the Scope of Exposome Studies and Research Needs from a Multidisciplinary Perspective2021

    • Author(s)
      Zhang Pei、Carlsten Christopher、Chaleckis Romanas、Hanhineva Kati、Huang Mengna、Isobe Tomohiko、Koistinen Ville M.、Meister Isabel、Papazian Stefano、Sdougkou Kalliroi、Xie Hongyu、Martin Jonathan W.、Rappaport Stephen M.、Tsugawa Hiroshi、Walker Douglas I.、Woodruff Tracey J.、Wright Robert O.、Wheelock Craig E.
    • Journal Title

      Environmental Science & Technology Letters

      Volume: 8 Issue: 10 Pages: 839-852

    • DOI

      10.1021/acs.estlett.1c00648

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment2021

    • Author(s)
      Robin Schmid, Daniel Petras, Louis-Felix Nothias, Mingxun Wang, Allegra T Aron, Annika Jagels, Hiroshi Tsugawa et al.
    • Journal Title

      Nature Communications

      Volume: 12 Issue: 1 Pages: 3832-3832

    • DOI

      10.1038/s41467-021-23953-9

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Metabolomics and complementary techniques to investigate the plant phytochemical cosmos2021

    • Author(s)
      Tsugawa Hiroshi、Rai Amit、Saito Kazuki、Nakabayashi Ryo
    • Journal Title

      Natural Product Reports

      Volume: 38 Issue: 10 Pages: 1729-1759

    • DOI

      10.1039/d1np00014d

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Book] 代謝物質量分析インフォマティクスの最新の研究動向と展望2022

    • Author(s)
      津川 裕司
    • Total Pages
      7
    • Publisher
      バイオサイエンスとインダストリー(バイオインダストリー協会)
    • Related Report
      2021 Research-status Report
  • [Remarks] SystemsOmicsLab

    • URL

      https://github.com/systemsomicslab

    • Related Report
      2023 Annual Research Report
  • [Remarks] RIKEN computational mass spectrometry

    • URL

      http://prime.psc.riken.jp/compms/index.html

    • Related Report
      2022 Research-status Report
  • [Remarks] RIKEN PRIMe CompMS

    • URL

      http://prime.psc.riken.jp/compms/index.html

    • Related Report
      2021 Research-status Report

URL: 

Published: 2021-07-13   Modified: 2025-01-30  

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