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Development of Gaussian-type function based projector-augmented waves method

Research Project

Project/Area Number 21K18931
Research Category

Grant-in-Aid for Challenging Research (Exploratory)

Allocation TypeMulti-year Fund
Review Section Medium-sized Section 32:Physical chemistry, functional solid state chemistry, and related fields
Research InstitutionNagoya University

Principal Investigator

Takeshi Yanai  名古屋大学, 理学研究科(WPI), 教授 (00462200)

Project Period (FY) 2021-07-09 – 2023-03-31
Project Status Completed (Fiscal Year 2022)
Budget Amount *help
¥6,370,000 (Direct Cost: ¥4,900,000、Indirect Cost: ¥1,470,000)
Fiscal Year 2022: ¥3,120,000 (Direct Cost: ¥2,400,000、Indirect Cost: ¥720,000)
Fiscal Year 2021: ¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
Keywords密度汎関数理論 / 射影増強波法 / 擬ポテンシャル / 基底関数 / ガウス型関数 / 解析的エネルギー微分
Outline of Research at the Start

我々は,最近射影増強波法(PAW) と呼ばれる擬ポテンシャル法の数値安定性・効率性に着目し,それを量子化学計算法のガウス型基底 に組み入れる試みを提案している。ガウス型基底とPAWの組み合わせるこの枠組みを「GTF-PAW法」と以降呼ぶ。本研究では,GTF-PAW法を活用した,現実的な量子化学計算を実現する革新的な高速・高精度DFTソルバーの開発が行われる。DFT計算ソルバーの心臓部である数値計算アルゴリズムを置き換える新しい高速・高精度計算システムの確立を目指す。

Outline of Final Research Achievements

We proposed a scheme to incorporate the PAW method into the conventional quantum
chemical DFT implementation based on Gauss-type function (GTF) basis. The potentially high usability of the GTF-based PAW method, referred to as GTF-PAW, was previously shown, while its implementation was limited to the local density approximation (LDA). The GTF-PAW-based formulation and implementation to raise the level of the functional treatment to the generalized gradient approximation (GGA) was developed. In addition, we introduced the uniform mesh grid for DFT’s quadrature in place of the conventional Becke grid. With the test calculations performed on illustrative molecules, it is confirmed that the conventional approach to implement GGA within GTF basis code can be straightforwardly integrated into the GTF-PAW method, allowing for the numerically stable treatment of the gradients of density.

Academic Significance and Societal Importance of the Research Achievements

今計算法は,従来型の全電子の計算を高い精度で再現できる基盤的な手法ありながら,一方で,数値計算の面で優位性をもつ。Gauss型関数としては,高指数を持つ基底を取り除いた圧倒的にコンパクトな基底系を利用しても,遜色のない精度を得ることができる。Meshグリッドを用いた計算を達成し,その結果がBeckeグリッドを用いた従来型と遜色のない,あるいは,潜在的には優位性を示すような結果を得る。本基底関数が全電子基底の結果を高精度に再現することができることを示すことに成功した。

Report

(3 results)
  • 2022 Annual Research Report   Final Research Report ( PDF )
  • 2021 Research-status Report
  • Research Products

    (28 results)

All 2023 2022 2021

All Journal Article (23 results) (of which Int'l Joint Research: 6 results,  Peer Reviewed: 23 results,  Open Access: 9 results) Presentation (5 results) (of which Int'l Joint Research: 2 results,  Invited: 5 results)

  • [Journal Article] Algorithm for analytic nuclear energy gradients of state averaged DMRG-CASSCF theory with newly derived coupled-perturbed equations2023

    • Author(s)
      Iino Tsubasa、Shiozaki Toru、Yanai Takeshi
    • Journal Title

      The Journal of Chemical Physics

      Volume: 158 Issue: 5 Pages: 054107-054107

    • DOI

      10.1063/5.0130636

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Discovery of 2,6-Dihalopurines as Stomata Opening Inhibitors: Implication of an LRX-Mediated H<sup>+</sup>-ATPase Phosphorylation Pathway2023

    • Author(s)
      Ueda Ayaka、Aihara Yusuke、Sato Shinya、Kano Keiko、Mishiro-Sato Emi、Kitano Hiroyuki、Sato Ayato、Fujimoto Kazuhiro J.、Yanai Takeshi、Amaike Kazuma、Kinoshita Toshinori、Itami Kenichiro
    • Journal Title

      ACS Chemical Biology

      Volume: 18 Issue: 2 Pages: 347-355

    • DOI

      10.1021/acschembio.2c00771

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Machine‐Learning Classification for the Prediction of Catalytic Activity of Organic Photosensitizers in the Nickel(II)‐Salt‐Induced Synthesis of Phenols2023

    • Author(s)
      Noto Naoki、Yada Akira、Yanai Takeshi、Saito Susumu
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 62 Issue: 11

    • DOI

      10.1002/anie.202219107

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Comment on “Canonical transcorrelated theory with projected Slater-type geminals” [J. Chem. Phys. 136, 084107 (2012)]2023

    • Author(s)
      Masteran Conner、Kumar Ashutosh、Teke Nakul、Gaudel Bimal、Yanai Takeshi、Valeev Edward F.
    • Journal Title

      The Journal of Chemical Physics

      Volume: 158 Issue: 5 Pages: 057101-057101

    • DOI

      10.1063/5.0135257

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular Mechanism of Spectral Tuning by Chloride Binding in Monkey Green Sensitive Visual Pigment2023

    • Author(s)
      Fujimoto Kazuhiro J.、Minowa Fumika、Nishina Michiya、Nakamura Shunta、Ohashi Sayaka、Katayama Kota、Kandori Hideki、Yanai Takeshi
    • Journal Title

      The Journal of Physical Chemistry Letters

      Volume: 14 Issue: 7 Pages: 1784-1793

    • DOI

      10.1021/acs.jpclett.2c03619

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Artificial neural network encoding of molecular wavefunctions for quantum computing2023

    • Author(s)
      Hagai Masaya、Sugiyama Mahito、Tsuda Koji、Yanai Takeshi
    • Journal Title

      Digital Discovery

      Volume: - Issue: 3 Pages: 634-650

    • DOI

      10.1039/d2dd00093h

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Local <i>N</i>-electron valence state perturbation theory using pair-natural orbitals based on localized virtual molecular orbitals2023

    • Author(s)
      Uemura Kazuma、Saitow Masaaki、Ishimaru Takaki、Yanai Takeshi
    • Journal Title

      The Journal of Chemical Physics

      Volume: 158 Issue: 15 Pages: 154110-154110

    • DOI

      10.1063/5.0143793

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] In Silico Analysis and Synthesis of Nafamostat Derivatives and Evaluation of Their Anti-SARS-CoV-2 Activity2022

    • Author(s)
      Fujimoto Kazuhiro J.、Hobbs Daniel C. F.、Umeda Miki、Nagata Akihiro、Yamaguchi Rie、Sato Yoshitaka、Sato Ayato、Ohmatsu Kohsuke、Ooi Takashi、Yanai Takeshi、Kimura Hiroshi、Murata Takayuki
    • Journal Title

      Viruses

      Volume: 14 Issue: 2 Pages: 389-389

    • DOI

      10.3390/v14020389

    • Related Report
      2022 Annual Research Report 2021 Research-status Report
    • Peer Reviewed / Open Access
  • [Journal Article] Fluorescent Organic π‐Radicals Stabilized with Boron: Featuring a SOMO?LUMO Electronic Transition2022

    • Author(s)
      Ito Masato、Shirai Shusuke、Xie Yongfa、Kushida Tomokatsu、Ando Naoki、Soutome Hiroki、Fujimoto Kazuhiro J.、Yanai Takeshi、Tabata Kenichi、Miyata Yasuo、Kita Hiroshi、Yamaguchi Shigehiro
    • Journal Title

      Angewandte Chemie International Edition

      Volume: 61 Issue: 25

    • DOI

      10.1002/anie.202201965

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 5-Thiaporphyrinium Cation: Effect of Sulphur Incorporation on Excited State Dynamics2022

    • Author(s)
      Takiguchi Aashi、Inai Naoto、Kang Seongsoo、Hagai Masaya、Lee Seokwon、Yanai Takeshi、Kim Dongho、Shinokubo Hiroshi
    • Journal Title

      Chemical Communications

      Volume: 58 Issue: 40 Pages: 5956-5959

    • DOI

      10.1039/d2cc00522k

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] Stochastic evaluation of four-component relativistic second-order many-body perturbation energies: A potentially quadratic-scaling correlation method2022

    • Author(s)
      Cruz J. C?sar、Garza Jorge、Yanai Takeshi、Hirata So
    • Journal Title

      The Journal of Chemical Physics

      Volume: 156 Issue: 22 Pages: 224102-224102

    • DOI

      10.1063/5.0091973

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Desulfonylative Coupling of Alkylsulfones with <i>gem-</i>Difluoroalkenes by Visible-Light Photoredox Catalysis2022

    • Author(s)
      Nambo Masakazu、Ghosh Koushik、Yim Jacky C.-H.、Tahara Yasuyo、Inai Naoto、Yanai Takeshi、Crudden Cathleen M.
    • Journal Title

      ACS Catalysis

      Volume: 12 Issue: 15 Pages: 9526-9532

    • DOI

      10.1021/acscatal.2c02233

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Int'l Joint Research
  • [Journal Article] A local pair-natural orbital-based complete-active space perturbation theory using orthogonal localized virtual molecular orbitals2022

    • Author(s)
      Saitow Masaaki、Uemura Kazuma、Yanai Takeshi
    • Journal Title

      The Journal of Chemical Physics

      Volume: 157 Issue: 8 Pages: 084101-084101

    • DOI

      10.1063/5.0094777

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Structure?Function Study of a Novel Inhibitor of Cyclin-Dependent Kinase C in Arabidopsis2022

    • Author(s)
      Saito Ami N、Maeda Akari E、Takahara Tomoaki T、Matsuo Hiromi、Nishina Michiya、Ono Azusa、Shiratake Katsuhiro、Notaguchi Michitaka、Yanai Takeshi、Kinoshita Toshinori、Ota Eisuke、Fujimoto Kazuhiro J、Yamaguchi Junichiro、Nakamichi Norihito
    • Journal Title

      Plant and Cell Physiology

      Volume: 63 Issue: 11 Pages: 1720-1728

    • DOI

      10.1093/pcp/pcac127

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Machine-Learning- and Knowledge-Based Scoring Functions Incorporating Ligand and Protein Fingerprints2022

    • Author(s)
      Fujimoto Kazuhiro J.、Minami Shota、Yanai Takeshi
    • Journal Title

      ACS Omega

      Volume: 7 Issue: 22 Pages: 19030-19039

    • DOI

      10.1021/acsomega.2c02822

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Determination of FRET Orientation Factor between Artificial Fluorophore and Photosynthetic Light-Harvesting 2 Complex (LH2)2022

    • Author(s)
      Kazuhiro J. Fujimoto, Tomoya Miyashita, Takehisa Dewa, Takeshi Yanai
    • Journal Title

      Sci. Rep.

      Volume: 12 Issue: 1 Pages: 15091-15091

    • DOI

      10.1038/s41598-022-19375-2

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Planarization of a bowl-shaped molecule by triple-decker stacking2022

    • Author(s)
      Kawashima Hiroyuki、Fukui Norihito、Phung Quan Manh、Yanai Takeshi、Shinokubo Hiroshi
    • Journal Title

      Cell Reports Physical Science

      Volume: 3 Issue: 9 Pages: 101045-101045

    • DOI

      10.1016/j.xcrp.2022.101045

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Impact of Hydrophobic/Hydrophilic Balance on Aggregation Pathways, Morphologies, and Excited-state Dynamics of Amphiphilic Diketopyrrolopyrrole Dyes in Aqueous Media2022

    • Author(s)
      Natsumi Fukaya, Soichiro Ogi, Hikaru Sotome, Kazuhiro Fujimoto, Takeshi Yanai, Nils Baumer, Gustavo Fernandez, Hiroshi Miyasaka, Shigehiro Yamaguchi
    • Journal Title

      J. Am. Chem. Soc.

      Volume: 144 Issue: 49 Pages: 22479-22492

    • DOI

      10.1021/jacs.2c07299

    • Related Report
      2022 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Substituent and Solvent Effects on the Photoisomerization of Cinnamate Derivatives: An XMS-CASPT2 Study2022

    • Author(s)
      Nomoto Atsuro、Inai Naoto、Yanai Takeshi、Okuno Yukihiro
    • Journal Title

      The Journal of Physical Chemistry A

      Volume: 126 Issue: 4 Pages: 497-505

    • DOI

      10.1021/acs.jpca.1c08504

    • Related Report
      2021 Research-status Report
    • Peer Reviewed
  • [Journal Article] Thermally Stable Array of Discrete C<sub>60</sub>s on a Two-Dimensional Crystalline Adlayer of Macrocycles both in Vacuo and under Ambient Pressure2022

    • Author(s)
      Kawano Shin-ichiro、Nakaya Masato、Saitow Masaaki、Ishiguro Atsuki、Yanai Takeshi、Onoe Jun、Tanaka Kentaro
    • Journal Title

      Journal of the American Chemical Society

      Volume: 144 Issue: 15 Pages: 6749-6758

    • DOI

      10.1021/jacs.1c13610

    • Related Report
      2021 Research-status Report
    • Peer Reviewed
  • [Journal Article] Phosphorylation of RNA Polymerase II by CDKC;2 Maintains the Arabidopsis Circadian Clock Period2022

    • Author(s)
      Uehara Takahiro N、Nonoyama Takashi、Taki Kyomi、Kuwata Keiko、Sato Ayato、Fujimoto Kazuhiro J、Hirota Tsuyoshi、Matsuo Hiromi、Maeda Akari E、Ono Azusa、Takahara Tomoaki T、Tsutsui Hiroki、Suzuki Takamasa、Yanai Takeshi、Kay Steve A、Itami Kenichiro、Kinoshita Toshinori、Yamaguchi Junichiro、Nakamichi Norihito
    • Journal Title

      Plant and Cell Physiology

      Volume: 63 Issue: 4 Pages: 450-462

    • DOI

      10.1093/pcp/pcac011

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Open Access / Int'l Joint Research
  • [Journal Article] Spectral Tuning Mechanism of Photosynthetic Light-Harvesting Complex II Revealed by <i>Ab Initio</i> Dimer Exciton Model2021

    • Author(s)
      Fujimoto Kazuhiro J.、Minoda Takumi、Yanai Takeshi
    • Journal Title

      The Journal of Physical Chemistry B

      Volume: 125 Issue: 37 Pages: 10459-10470

    • DOI

      10.1021/acs.jpcb.1c04457

    • Related Report
      2021 Research-status Report
    • Peer Reviewed
  • [Journal Article] A DMRG/CASPT2 Investigation of Metallocorroles: Quantifying Ligand Noninnocence in Archetypal 3d and 4d Element Derivatives2021

    • Author(s)
      Phung Quan Manh、Muchammad Yasin、Yanai Takeshi、Ghosh Abhik
    • Journal Title

      JACS Au

      Volume: 1 Issue: 12 Pages: 2303-2314

    • DOI

      10.1021/jacsau.1c00417

    • Related Report
      2021 Research-status Report
    • Peer Reviewed / Int'l Joint Research
  • [Presentation] ニューラルネットワーク符号化波動関数計算の量子アルゴリズムの開発2023

    • Author(s)
      柳井毅
    • Organizer
      73.スーパーコンピュータワークショップ2022「複雑電子系の理論・計算科学」
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] Use of Boltzmann machine quantum state ansatz for molecular wave function solver2022

    • Author(s)
      柳井毅
    • Organizer
      World Association of Theoretical and Computational Chemists (WATOC)
    • Related Report
      2022 Annual Research Report
    • Int'l Joint Research / Invited
  • [Presentation] 量子化学計算の大規模化・高精度化による挑戦2022

    • Author(s)
      柳井毅
    • Organizer
      俯瞰ワークショッフナノテクノロシー材料分野 区分別分科会
    • Related Report
      2022 Annual Research Report
    • Invited
  • [Presentation] Basic things of multiconfigurational wavefunction methods2022

    • Author(s)
      柳井毅
    • Organizer
      Virtual Winter School on Computational Chemistry
    • Related Report
      2021 Research-status Report
    • Int'l Joint Research / Invited
  • [Presentation] ニューラルネットワーク波動関数を用いた量子化学計算法2021

    • Author(s)
      柳井毅
    • Organizer
      第24回情報論的学習理論ワークショップ
    • Related Report
      2021 Research-status Report
    • Invited

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Published: 2021-07-13   Modified: 2024-01-30  

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