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Studies of alternative macroautophagy and its application for "Autophagic Diseases"

Research Project

Project/Area Number 22229002
Research Category

Grant-in-Aid for Scientific Research (S)

Allocation TypeSingle-year Grants
Research Field Pathological medical chemistry
Research InstitutionTokyo Medical and Dental University

Principal Investigator

SHIMIZU Shigeomi  東京医科歯科大学, 難治疾患研究所, 教授 (70271020)

Co-Investigator(Kenkyū-buntansha) KONISHI Akimitsu  東京医科歯科大学, 難治疾患研究所, 講師 (50381877)
YOSHIDA Tatsushi  東京医科歯科大学, 難治疾患研究所, 講師 (80315936)
Co-Investigator(Renkei-kenkyūsha) ARAKAWA Satoko  東京医科歯科大学, 難治疾患研究所, 助教 (90415159)
Project Period (FY) 2010-04-01 – 2015-03-31
Project Status Completed (Fiscal Year 2014)
Budget Amount *help
¥217,360,000 (Direct Cost: ¥167,200,000、Indirect Cost: ¥50,160,000)
Fiscal Year 2014: ¥41,080,000 (Direct Cost: ¥31,600,000、Indirect Cost: ¥9,480,000)
Fiscal Year 2013: ¥42,640,000 (Direct Cost: ¥32,800,000、Indirect Cost: ¥9,840,000)
Fiscal Year 2012: ¥43,160,000 (Direct Cost: ¥33,200,000、Indirect Cost: ¥9,960,000)
Fiscal Year 2011: ¥42,380,000 (Direct Cost: ¥32,600,000、Indirect Cost: ¥9,780,000)
Fiscal Year 2010: ¥48,100,000 (Direct Cost: ¥37,000,000、Indirect Cost: ¥11,100,000)
Keywordsオートファジー / Atg5非依存性 / がん / 神経変性疾患 / 発生 / Atg5非依存的オートファジー / 癌 / 遺伝学 / シグナル伝達 / 生体分子 / ストレス / 貧血 / 発癌 / alternative macroautophagy / Atg5 / 低分子化合物 / オートファジー病
Outline of Final Research Achievements

Autophagy is a process that leads to the bulk degradation of subcellular constituents through the creation of autophagosomes/ autolysosomes. Previously, it was believed that Atg5 is essential for induction of autophagy. However, we found that cells lacking Atg5 can still induce autophagy. Therefore, we here analyzed Atg5-independent alternative autophagy. We first discovered that alternative autophagy is conserved phylogenetically from yeast to mammals. We next identified 14 novel genes that are required for alternative autophagy and unveiled the molecular mechanisms. Using 11 different types of alternative autophagy-deficient mice, we discovered the involvement of alternative autophagy in the development and cell differentiation. We also identified the defect of alternative autophagy causes various diseases, including cancer and neurodegenerative diseases. We further discovered autophagy-inducing small compounds for applying “Autophagy Diseases”

Assessment Rating
Verification Result (Rating)

A

Assessment Rating
Result (Rating)

A-: Progress in the research is steadily towards the initial goal. However, further efforts are necessary as a part of the research progress is delayed.

Report

(9 results)
  • 2015 Research Progress Assessment (Verification Result) ( PDF )
  • 2014 Annual Research Report   Final Research Report ( PDF )
  • 2013 Annual Research Report   Abstract(Research Progress Assessment) ( PDF )   Research Progress Assessment (Result) ( PDF )
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (58 results)

All 2015 2014 2013 2012 2011 2010 Other

All Journal Article (24 results) (of which Peer Reviewed: 24 results,  Acknowledgement Compliant: 2 results) Presentation (23 results) (of which Invited: 10 results) Book (3 results) Remarks (5 results) Patent(Industrial Property Rights) (3 results) (of which Overseas: 1 results)

  • [Journal Article] Ulk1-mediated Atg5-independent macroautophagy mediates elimination of mitochondria from embryonic reticulocytes2014

    • Author(s)
      S. Honda, S. Arakawa, Y. Nishida, H. Yamaguchi, E. Ishii, S. Shimizu.
    • Journal Title

      Nature communications

      Volume: 5 Issue: 1 Pages: 4004-4004

    • DOI

      10.1038/ncomms5004

    • Related Report
      2014 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Autophagic Cell Death and Cancer.2014

    • Author(s)
      S. Shimizu, T. Yoshida, M. Tsujioka, S. Arakawa.
    • Journal Title

      Int J Mol Sci.

      Volume: 15 Issue: 2 Pages: 3145-3153

    • DOI

      10.3390/ijms15023145

    • NAID

      40019721683

    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Alternative Macroautophagy and Mitophagy2014

    • Author(s)
      S. Shimizu, S. Honda, S. Arakawa, H. Yamaguchi
    • Journal Title

      Int. J. Biochem. Cell Biol.

      Volume: 50 Pages: 64-66

    • DOI

      10.1016/j.biocel.2014.02.016

    • Related Report
      2014 Annual Research Report 2013 Annual Research Report
    • Peer Reviewed / Acknowledgement Compliant
  • [Journal Article] Ulk1-mediated Atg5-independent macroautophagy mediates elimination of mitochondria from embryonic reticulocytes.2014

    • Author(s)
      S. Honda, S. Arakawa, Y. Nishida, H. Yamaguchi, E. Ishii, S. Shimizu,
    • Journal Title

      Nature Communications

      Volume: press

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Inhibition of epithelial cell death by Bcl-2 improved chronic colitis in IL10 KO mice2013

    • Author(s)
      T. Mizushima, S. Arakawa, Y. Sanada, I. Yoshino, D. Miyazaki, H. Urushima, Y. Tsujimoto, T. Ito, S. Shimizu
    • Journal Title

      Am J Pathol.

      Volume: 183 Issue: 6 Pages: 1936-1944

    • DOI

      10.1016/j.ajpath.2013.08.012

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] p53 Inhibits Vascular Endothelial Growth Factor Expression in Solid Tumor.2012

    • Author(s)
      Yasuhiko Yoshioka
    • Journal Title

      Journal of Surgical Research

      Volume: 174 Issue: 2 Pages: 291-297

    • DOI

      10.1016/j.jss.2010.12.028

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Involvement of Beclin 1 in the engulfment of apoptotic cells2012

    • Author(s)
      Konishi A, Arakawa S, Yue Z, Shimizu S
    • Journal Title

      J.Biol.Chem.

      Volume: (epub) Issue: 17 Pages: 13919-13929

    • DOI

      10.1074/jbc.m112.348375

    • Related Report
      2012 Annual Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Shigella targets epithelial tricellular junctions to spread between cells via a noncanonical clathrin-dependent endocytic pathway.2012

    • Author(s)
      Makoto Fukumatsu
    • Journal Title

      Cell Host & Microbe

      Volume: 11 Issue: 4 Pages: 325-336

    • DOI

      10.1016/j.chom.2012.03.001

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Hypertrophy and unconventional cell division of hepatocytes underlie liver regeneration.2012

    • Author(s)
      Yuichiro Miyaoka
    • Journal Title

      Current Biology

      Volume: 22 Issue: 13 Pages: 1166-1175

    • DOI

      10.1016/j.cub.2012.05.016

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Transformation of an antimicrobial peptide into a plasma membrane-permeable, mitochondria-targeted peptide via the substitution of lysine with arginine2012

    • Author(s)
      Ikuhiko Nakase, Shinya Okumura, Sayaka Katayama, Hisaaki Hirose, Silvia Pujals, Hirofumi Yamaguchi, Satoko Arakawa, Shigeomi Shimizu, Shiroh Futaki
    • Journal Title

      Chemical Communications

      Volume: 48 Issue: 90 Pages: 11097-11099

    • DOI

      10.1039/c2cc35872g

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Shigella Targets Epithelial Tricellular Junctions to Spread Between Cells via a Noncanonical Clathrin-dependent Endocytic Pathway2012

    • Author(s)
      Makoto Fukumatsu
    • Journal Title

      Cell Host & Microbe

      Volume: (in press)

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Delayed-onset caspase-dependent massive hepatocyte apoptosis upon Fasactivation in Bak/Bax-deficient mice2011

    • Author(s)
      Hikita, H.
    • Journal Title

      Hepatology

      Volume: VOL. 54 Issue: 1 Pages: 240-251

    • DOI

      10.1002/hep.24305

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Spatial coupling of mTOR and autophagy augments secretory/phenotypes2011

    • Author(s)
      Masako Narita
    • Journal Title

      Science

      Volume: 332 Issue: 6032 Pages: 966-970

    • DOI

      10.1126/science.1205407

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Stress-activated protein kinase MKK7 regulates axon elongation in the developing cerebral cortex2011

    • Author(s)
      Tokiwa Yamasaki
    • Journal Title

      Journal of Neuroscience

      Volume: 31 Pages: 16872-16883

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] p53 Inhibits Vascular Endothelial Growth Factor Expression in Solid Tumor2011

    • Author(s)
      Y.Yoshioka, et al.
    • Journal Title

      J Surg Res.

      Volume: 印刷中

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Delayed-onset caspase-dependent massive hepatocyte apoptosis upon Fas activation in Bak/Bax-deficient mice2011

    • Author(s)
      H.Hikita, et al.
    • Journal Title

      Hepatology

      Volume: 印刷中

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Spatial coupling of mTOR and autophagy augments secretory phenotypes2011

    • Author(s)
      M.Narita, et al.
    • Journal Title

      Science

      Volume: 印刷中

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Involvement of JNK in the regulation of autophagic cell death2010

    • Author(s)
      S.Shimizu, et al.
    • Journal Title

      Oncogene

      Volume: 29 Pages: 2070-2082

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] xCT deficiency accelerates chemically induced tumorigenesis2010

    • Author(s)
      A.Nabeyama, et al.
    • Journal Title

      Proc.Natl.Acad.Ssi.USA

      Volume: 107 Pages: 6436-6441

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Autophagy takes an alternative pathway2010

    • Author(s)
      S.Shimizu, et al.
    • Journal Title

      Autophagy

      Volume: 6 Pages: 290-291

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] The role of cyclophilin D in learning and memory2010

    • Author(s)
      A.Mouri, et al.
    • Journal Title

      Hippocampus

      Volume: 20 Pages: 293-304

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Cyclophilin D-dependent mitochondrial permeability transition is not involved inneurodegeneration in mnd2 mice2010

    • Author(s)
      K.Ideguchi, et al.
    • Journal Title

      Biochem.Biophys.Res.Commun.

      Volume: 393 Pages: 264-267

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Preparation of connexin43-integrated giant Liposomes by a baculovirus expression-liposome fusion method2010

    • Author(s)
      K.Kamiya, et al.
    • Journal Title

      Biotechnol.Bioeng.

      Volume: 107 Pages: 836-843

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Neurodegeneration in mnd2 mutant mice is not prevented by parkin transgene2010

    • Author(s)
      T.Yoshida, et al.
    • Journal Title

      Biochem.Biophys.Res.Commun.

      Volume: 393 Pages: 264-267

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] Physiological Role of Atg5-independent macroautophagy2014

    • Author(s)
      Shimizu S
    • Organizer
      The 16th Northeastern Asian Symposium
    • Place of Presentation
      Busan, Korea
    • Year and Date
      2014-12-19 – 2014-12-20
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 新しく発見したオートファジー機構とオルガネラ分解2014

    • Author(s)
      清水重臣
    • Organizer
      第57回日本神経化学会大会
    • Place of Presentation
      奈良市
    • Year and Date
      2014-09-29
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] 新しく発見したオートファジーと肝疾患2014

    • Author(s)
      清水重臣
    • Organizer
      第21回 肝細胞研究会
    • Place of Presentation
      文京区
    • Year and Date
      2014-06-28
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Development of Molecularly Targeted Anticancer Agents Based on the Regulation of Autophagic Cell Death2014

    • Author(s)
      Shimizu S
    • Organizer
      The Uehara Memorial Foundation Symposium 2014
    • Place of Presentation
      Tokyo, Japan
    • Year and Date
      2014-06-15 – 2014-06-17
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] オートファジー破綻に起因する発癌機構の解明とその抗癌剤開発への応用2014

    • Author(s)
      清水重臣
    • Organizer
      第13回南大阪癌フォーラム
    • Place of Presentation
      堺市
    • Year and Date
      2014-04-19
    • Related Report
      2014 Annual Research Report
    • Invited
  • [Presentation] Biological Roles of Autophagic Cell Death2013

    • Author(s)
      Shimizu S
    • Organizer
      CSH Asia conference on Mechanisms and Functions of Non-apoptotic Cell Death
    • Place of Presentation
      Suzhou, China
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Mitophagy is regulated by Ulk1-dependent alternative macroautophagy during erythrocyte maturation2013

    • Author(s)
      Shimizu S
    • Organizer
      International Symposium on Mitochondria
    • Place of Presentation
      Tokyo, Japan
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] オートファジーと細胞死のクロストーク2013

    • Author(s)
      清水重臣
    • Organizer
      第22回日本Cell Death学会
    • Place of Presentation
      京都
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Biological roles of Autophagic cell death2013

    • Author(s)
      Shimizu S
    • Organizer
      第86回日本生化学会
    • Place of Presentation
      横浜
    • Related Report
      2013 Annual Research Report
    • Invited
  • [Presentation] Alternative Macroautophagy and Cancer2012

    • Author(s)
      Shigeomi Shimizu
    • Organizer
      第71回日本癌学会
    • Place of Presentation
      札幌市
    • Related Report
      2012 Annual Research Report
  • [Presentation] Molecular Mechanisms and Physiological Roles of Atg5/Atg7-independent Macroautophagy2012

    • Author(s)
      Shigeomi Shimizu
    • Organizer
      The 6th Symposium on Autophagy
    • Place of Presentation
      名護市
    • Related Report
      2012 Annual Research Report
  • [Presentation] 様々なストレスに対応する為に機能するオートファジー2012

    • Author(s)
      清水重臣
    • Organizer
      第16回日本統合医療学会
    • Place of Presentation
      豊中市
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Maintenance of tissue homeostasis by dying cells and autophagy2012

    • Author(s)
      清水重臣
    • Organizer
      第35回日本分子生物学会
    • Place of Presentation
      福岡市
    • Related Report
      2012 Annual Research Report
  • [Presentation] Various Types of Cell Death and Autophagy2011

    • Author(s)
      Shigeomi Shimizu
    • Organizer
      第34回日本分子生物学会年会
    • Place of Presentation
      横浜市
    • Year and Date
      2011-12-15
    • Related Report
      2011 Annual Research Report
  • [Presentation] 生体で見られる様々な細胞死とオートファジー2011

    • Author(s)
      清水重臣
    • Organizer
      第1回横断的腫瘍フォーラム
    • Place of Presentation
      吹田市(招待講演)
    • Year and Date
      2011-12-07
    • Related Report
      2011 Annual Research Report
  • [Presentation] アポトーシスと非アポトーシス細胞死2011

    • Author(s)
      清水重臣
    • Organizer
      第73回日本血液学会
    • Place of Presentation
      名古屋市(招待講演)
    • Year and Date
      2011-10-14
    • Related Report
      2011 Annual Research Report
  • [Presentation] 様々な疾患を惹起するミトコンドリア細胞死孔の解析2011

    • Author(s)
      清水重臣
    • Organizer
      第84回日本生化学会
    • Place of Presentation
      京都市
    • Year and Date
      2011-09-24
    • Related Report
      2011 Annual Research Report
  • [Presentation] オートファジーと神経変性疾患2011

    • Author(s)
      清水重臣
    • Organizer
      「病態に根ざしたALSの新規治療法開発班」平成23年度ワークショップ
    • Place of Presentation
      千代田区(招待講演)
    • Year and Date
      2011-09-22
    • Related Report
      2011 Annual Research Report
  • [Presentation] オートファジーを標的とした難治疾患克服への戦略2011

    • Author(s)
      清水重臣
    • Organizer
      新適塾「難病への挑戦」
    • Place of Presentation
      豊中市(招待講演)
    • Year and Date
      2011-09-02
    • Related Report
      2011 Annual Research Report
  • [Presentation] 細胞死とオートファジーのクロストーク2011

    • Author(s)
      清水重臣
    • Organizer
      日本Cell Death学会
    • Place of Presentation
      文京区
    • Year and Date
      2011-07-29
    • Related Report
      2011 Annual Research Report
  • [Presentation] Alternative macroautophagy2011

    • Author(s)
      Shigeomi Shimizu
    • Organizer
      Parkinson Disease and Mitophagy
    • Place of Presentation
      文京区
    • Year and Date
      2011-06-11
    • Related Report
      2011 Annual Research Report
  • [Presentation] Discovery of AtgS/Atg7-independent alternative macroautophagy2010

    • Author(s)
      S.Shimizu
    • Organizer
      6^<th> Institute network symposium
    • Place of Presentation
      Kanazawa
    • Year and Date
      2010-06-25
    • Related Report
      2010 Annual Research Report
  • [Presentation] A critical role for the autophagy gene Ulkl in Atg5- independent alternative macroautophagy2010

    • Author(s)
      S.Shimizu
    • Organizer
      Gordon Conference
    • Place of Presentation
      Italy
    • Year and Date
      2010-04-25
    • Related Report
      2010 Annual Research Report
  • [Book] Innovative Medicine : Basic Research and Development2015

    • Author(s)
      Shimizu S
    • Publisher
      Springer
    • Related Report
      2014 Annual Research Report
  • [Book] AUTOPHAGY: Cancer, Other Pathologies, Inflammation, Immunity, and Infection.Vol. 22014

    • Author(s)
      S. Shimizu, S. Arakawa, Y. Nishida, H. Yamaguchi, T. Yoshida.
    • Total Pages
      250
    • Publisher
      Academic Press,
    • Related Report
      2013 Annual Research Report
  • [Book] 細胞死解析プロトコール2011

    • Author(s)
      清水重臣
    • Total Pages
      223
    • Publisher
      羊土社
    • Related Report
      2011 Annual Research Report
  • [Remarks] 東京医科歯科大学 難治疾患研究所 病態細胞生物学分野ホームページ

    • URL

      http://www.tmd.ac.jp/mri/pcb/index.html

    • Related Report
      2014 Annual Research Report
  • [Remarks] 難治疾患研究所 病態細胞生物学分野ホームページ

    • URL

      http://www.tmd.ac.jp/mri/section/pathophysiology/pcb/index.html

    • Related Report
      2013 Annual Research Report
  • [Remarks] 東京医科歯科大学 難治疾患研究所 病態細胞生物学分野ホームページ

    • URL

      http://www.tmd.ac.jp/mri/pcb/index.html

    • Related Report
      2012 Annual Research Report
  • [Remarks]

    • URL

      http://www.tmd.ac.jp/mri/pcb/index.html

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www.tmd.ac.jp/mri/pcb/index.html

    • Related Report
      2010 Annual Research Report
  • [Patent(Industrial Property Rights)] ベンゾチオフェン化合物、該化合物を有効成分とするオルタナティブオートファジー誘導剤及び抗癌剤、並びに抗癌活性を有する化合物をスクリーニングするための方法2013

    • Inventor(s)
      清水重臣、室橋道子、細谷孝充、 吉田優
    • Industrial Property Rights Holder
      国立大学法人東京医科歯科大学
    • Industrial Property Rights Type
      特許
    • Filing Date
      2013-02-07
    • Related Report
      2012 Annual Research Report
    • Overseas
  • [Patent(Industrial Property Rights)] 抗癌活性を有する化合物をスクリーニングするための方法2012

    • Inventor(s)
      清水重臣, 室橋道子
    • Industrial Property Rights Holder
      国立大学法人東京医科歯科大学
    • Industrial Property Number
      2012-026377
    • Filing Date
      2012-02-09
    • Related Report
      2011 Annual Research Report
  • [Patent(Industrial Property Rights)] ベンゾチオフェン化合物、並びに該化合物を有効成分とするオルタナティブオートファジー誘導剤及び抗癌剤2012

    • Inventor(s)
      清水重臣, 室橋道子, 細谷孝充, 吉田満
    • Industrial Property Rights Holder
      国立大学法人東京医科歯科大学
    • Industrial Property Number
      2012-026373
    • Filing Date
      2012-02-09
    • Related Report
      2011 Annual Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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