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Development of comparative metagenomics for soil microbiome analysis

Research Project

Project/Area Number 22248038
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Boundary agriculture
Research InstitutionThe University of Tokyo

Principal Investigator

SENOO Keishi  東京大学, 大学院・農学生命科学研究科, 教授 (40206652)

Co-Investigator(Kenkyū-buntansha) OHTA Hiroyuki  茨城大学, 農学部, 教授 (80168947)
Co-Investigator(Renkei-kenkyūsha) HATTORI Masahira  東京大学, 新領域創成科学研究科, 教授 (70175537)
SHINANO Takuro  (独)農業・食品産業技術総合研究機構, 東北農業研究センター 農業放射線研究 センター, センター長 (20235542)
MINAMISAWA Kiwamu  東北大学, 大学院・生命科学研究科, 教授 (70167667)
OTSUKA Shigeto  東京大学, 大学院・農学生命科学研究科, 准教授 (10313074)
HASHIMOTO Tomoyoshi  (独)農業・食品産業技術総合研究機構, 中央農業総合研究センター, 上席研究員 (90343946)
YOH Muneoki  東京農工大学, 農学研究院, 教授 (50260526)
Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥46,670,000 (Direct Cost: ¥35,900,000、Indirect Cost: ¥10,770,000)
Fiscal Year 2012: ¥11,570,000 (Direct Cost: ¥8,900,000、Indirect Cost: ¥2,670,000)
Fiscal Year 2011: ¥14,690,000 (Direct Cost: ¥11,300,000、Indirect Cost: ¥3,390,000)
Fiscal Year 2010: ¥20,410,000 (Direct Cost: ¥15,700,000、Indirect Cost: ¥4,710,000)
Keywords生物環境 / 土壌メタゲノミクス / 土壌環境再生 / 窒素循環 / 水田土壌 / メタトランスクリプトーム解析 / 畑土壌 / 三宅島森林土壌 / 細菌群集構造 / 糸状菌群集構造 / 一酸化二窒素 / RNAクローンライブラリー解析 / 定量PCR解析 / Rice cluster VI / 初成土壌 / Leptosprillum属細菌 / Acidithiobacillus属細菌 / RubisCO
Research Abstract

We tried to uncover the structure and function of microbial communities in soil ecosystem through soil metagenomics using the new DNA-sequencing technology. Novel microbial communities responsible for reduction reaction and nitrogen transformation in rice paddy soil were revealed. The resilience of soil microbial community to the volcanic eruption impact was revealed and the detailed picture of soil microbial genetic response to the long-term application of livestock liquid manure was obtained.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (66 results)

All 2013 2012 2011 2010 Other

All Journal Article (5 results) (of which Peer Reviewed: 5 results) Presentation (59 results) (of which Invited: 6 results) Book (2 results)

  • [Journal Article] Analysis of Early Bacterial Communities on Volcanic Deposits on the Island of Miyake (Miyake-jima), Japan: a 6-year Study at a Fixed Site2012

    • Author(s)
      藤村玲子
    • Journal Title

      Microbes and Environments

      Volume: 27 Issue: 1 Pages: 19-29

    • DOI

      10.1264/jsme2.ME11207

    • NAID

      10030122581

    • ISSN
      1342-6311, 1347-4405
    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Complete genome sequence of Leptospirillum ferrooxidans strain C2-3 isolated from fresh volcanic ash deposit on the island of Miyake2012

    • Author(s)
      Reiko Fujimura, Yoshinori Sato, Tomoyasu Nishizawa, Kenshiro Oshima, Seok-Won Kim, Masahira Hattori, Takashi Kamijo and Hiroyuki Ohta
    • Journal Title

      Japan, Journal of Bacteriology

      Volume: 194 Issue: 15 Pages: 4122-4123

    • DOI

      10.1128/jb.00696-12

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] III-1. Metagenomics in agriculture: Metagenomic analysis of rice paddy field soil2011

    • Author(s)
      伊藤英臣、石井聡、妹尾啓史
    • Journal Title

      NIPPON SUISAN GAKKAISHI

      Volume: 77 Issue: 2 Pages: 254

    • DOI

      10.2331/suisan.77.254

    • NAID

      10029124420

    • ISSN
      0021-5392, 1349-998X
    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 初成土壌環境における微生物-三宅島土壌 生態系再生のメカニズムを探る-2011

    • Author(s)
      藤村玲子、佐藤嘉則、難波謙二、 太田寛行
    • Journal Title

      日本生態学会誌

      Volume: 61巻 Pages: 211-218

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] 初成土壌環境における微生物-三宅島土壌生態系再生のメカニズムを探る-2011

    • Author(s)
      藤村玲子,佐藤嘉則,難波謙二,太田寛行
    • Journal Title

      日本生態学会誌

      Volume: 61 Pages: 211-218

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Presentation] 環境RNAからrRNAを除去するテーラーメイド型手法の開発2013

    • Author(s)
      増田曜子、伊藤英臣、白鳥豊、海野佑介、信濃卓郎、下村有美、早津雅仁、大島健志朗、服部正平、磯部一夫、大塚重人、妹尾啓史
    • Organizer
      第7回日本ゲノム微生物学会年会
    • Place of Presentation
      長浜バイオ大学、長浜市
    • Related Report
      2012 Annual Research Report
  • [Presentation] メタゲノム・メタトランスクリプトーム解析法を用いた水田土壌微生物群集の構造と機能の網羅的解明2012

    • Author(s)
      伊藤英臣、石井聡、白鳥豊、大島健志朗、大塚重人、 服部正平、 妹尾啓史
    • Organizer
      第28回日本微生物生態学会大会 第 4回日韓微生物生態シンポジウム
    • Place of Presentation
      豊橋技術科学大学、豊橋市
    • Year and Date
      2012-09-20
    • Related Report
      2012 Final Research Report
  • [Presentation] メタゲノム解析から明らかにされた三宅島初成土壌微生物生態系の遷移2012

    • Author(s)
      藤村玲子,金錫元,佐藤 嘉則,須田亙,西澤 智康,大島健志朗,服部正平,上條隆志,太田寛行
    • Organizer
      第28回日本微生物生態学会大会
    • Place of Presentation
      豊橋技術科学大学、豊橋市
    • Year and Date
      2012-09-20
    • Related Report
      2012 Final Research Report
  • [Presentation] スラリー長期連用圃場における土壌微生物生態系のメタゲノム解析2012

    • Author(s)
      石川美友紀,藤村玲子,新美洋,橋本知義,金錫元,須田亙,大島健志朗,服部正平,太田寛行
    • Organizer
      第28回日本微生物生態学会大会
    • Place of Presentation
      豊橋技術科学大学、豊橋市
    • Year and Date
      2012-09-20
    • Related Report
      2012 Final Research Report
  • [Presentation] メタゲノム 解析法を用いた水田土壌微生物群集の構造と機能の網羅的解明-メタゲノム解析から 見えた脱窒反応に関与する新たな微生物群集構造-2012

    • Author(s)
      伊藤英臣、石井聡、白鳥豊、大島健志郎、大塚重人 、服部正 平 、妹尾啓史
    • Organizer
      日本土壌肥料学会 2012 年度鳥取大会
    • Place of Presentation
      鳥取大学、鳥取市
    • Year and Date
      2012-09-05
    • Related Report
      2012 Final Research Report
  • [Presentation] Effect of vegetation cover on bacterial diversity of volcanic deposits in Miyake-jima2012

    • Author(s)
      Yong Guo, Reiko Fujimura, Yoshinori Sato, Wataru Suwata, Kenshiro Oshima, Masahira Hattori, Takashi Kamijo, Hiroyuki Ohta
    • Organizer
      Japan, 日本土壌肥料学会2012年度鳥取大会
    • Place of Presentation
      鳥取大学、鳥取市
    • Year and Date
      2012-09-04
    • Related Report
      2012 Final Research Report
  • [Presentation] Bacterial community of the fresh volcanic deposits on barren land, grassland, and woodland in the Island of Miyake, Japan, as revealed by pyrosequencing-based analysis of 16S rRNA genes2012

    • Author(s)
      Yong Guo, Reiko Fujimura, Yoshinori Sato, Kenshiro Oshima, Masahira Hattori, Takashi Kamijo, Hiroyuki Ohta
    • Organizer
      14th International Symposium on Microbial Ecology
    • Place of Presentation
      コペンハーゲン、デンマーク
    • Year and Date
      2012-08-21
    • Related Report
      2012 Final Research Report
  • [Presentation] Metagenomic analysis uncovered novel structure of microbial communities involved in denitrification in paddy soil2012

    • Author(s)
      Hideomi Itoh, Satoshi Ishii, Yutaka Shiratori, Kenshiro Oshima, Shigeto Otsuka, Masahira Hattori and Keishi Senoo
    • Organizer
      14th International Symposium on Microbial Ecology
    • Place of Presentation
      コペンハーゲン、 デンマーク
    • Year and Date
      2012-08-20
    • Related Report
      2012 Final Research Report
  • [Presentation] メタゲノム解析から見えた土壌圏の一酸化二窒素還元に関与する新たな微生物群集構造2012

    • Author(s)
      伊藤英臣、石井聡、大島健志郎、 大塚重人 、服 部正平 、妹尾啓史
    • Organizer
      日本土壌微生物学会2012年度神戸大会
    • Place of Presentation
      神戸大学、神戸市
    • Year and Date
      2012-06-23
    • Related Report
      2012 Annual Research Report 2012 Final Research Report
  • [Presentation] Metagenomicand metatranscriptomic analysis of microbial communities in rice paddy soil2012

    • Author(s)
      Hideomi Itoh and Keishi Senoo
    • Organizer
      Japan-China International Symposium of Biotechnology onAgriculture and Environment
    • Place of Presentation
      東京大学、東京
    • Year and Date
      2012-05-13
    • Related Report
      2012 Final Research Report
  • [Presentation] 水田土壌微 生物群集のメタトランスクリプトーム解析2012

    • Author(s)
      伊藤英臣、石井聡、大島健志朗、白鳥豊、 大 塚重人、服部正 平 、妹尾啓史
    • Organizer
      第6回日本ゲノム微生物学会年会(東京)
    • Place of Presentation
      立教大学、東京
    • Year and Date
      2012-03-11
    • Related Report
      2012 Final Research Report
  • [Presentation] Metagenomic analysis uncovered novel structure of microbial communities involved in denitrification in paddy soil2012

    • Author(s)
      Hideomi Itoh, Satoshi Ishii, Yutaka Shiratori, Kenshiro Oshima, Shigeto Otsuka, Masahira Hattori and Keishi Senoo
    • Organizer
      14th International Symposium on Microbial Ecology
    • Place of Presentation
      コペンハーゲン、デンマーク
    • Related Report
      2012 Annual Research Report
  • [Presentation] メタゲノム解析法を用いた水田土壌微生物群集の構造と機能の網羅的解明-メタゲノム解析から見えた脱窒反応に関与する新たな微生物群集構造-2012

    • Author(s)
      伊藤英臣、石井聡、白鳥豊、大島健志郎、大塚重人、服部正平、妹尾啓史
    • Organizer
      日本土壌肥料学会2012年度鳥取大会
    • Place of Presentation
      鳥取大学、鳥取市
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] メタゲノム・メタトランスクリプトーム解析法を用いた水田土壌微生物群集の構造と機能の網羅的解明2012

    • Author(s)
      伊藤英臣、石井聡、白鳥豊、大島健志朗、大塚重人、服部正平、妹尾啓史
    • Organizer
      第28回日本微生物生態学会大会 第4回日韓微生物生態シンポジウム
    • Place of Presentation
      豊橋技術科学大学、豊橋市
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 水田土壌微生物群集のメタトランスクリプトーム解析2012

    • Author(s)
      伊藤英臣、石井聡、大島健志朗、白鳥豊、大塚重人、服部正平、妹尾啓史
    • Organizer
      第6回日本ゲノム微生物学会年会(東京)
    • Place of Presentation
      立教大学、東京
    • Related Report
      2011 Annual Research Report
  • [Presentation] メタゲノ ム解析による水田脱窒機構の解明、農業環境 技術研究所公開セミナー2011

    • Author(s)
      妹尾啓 史 、吉田愛美、伊藤英臣
    • Organizer
      微生物ゲノム情報の活用による温室効果ガス研究の新展開
    • Place of Presentation
      つくば国際会議場、つくば市
    • Year and Date
      2011-12-06
    • Related Report
      2012 Final Research Report
  • [Presentation] 三宅島 2000 年噴火堆積物から分離された鉄 酸化細菌 Leptospirillum ferrooxidans C2-3 株の ゲノム解析2011

    • Author(s)
      藤村玲子,佐藤嘉則,細川研,西澤智康, 大島健志朗,服部正平,上條隆志,太田寛行
    • Organizer
      日本土壌微生物学会2011年度大会
    • Place of Presentation
      鳴子公民館、大崎市
    • Year and Date
      2011-11-26
    • Related Report
      2012 Final Research Report
  • [Presentation] Analysis of bacterial community in early stage of soil ecosystem after the 2000 volcanic eruption in Miyake-jima Island, Japan2011

    • Author(s)
      Yong Guo, Reiko Fujimura, Ken Hosokawa, Yoshinori Sato, Tomoyasu Nishizawa , TakashiKamijo and Hiroyuki Ohta
    • Organizer
      第26回日本微生物生態学会大会(つ くば)
    • Place of Presentation
      筑波大学
    • Year and Date
      2011-11-25
    • Related Report
      2012 Final Research Report
  • [Presentation] 三宅島 2000 年噴火火山灰堆 積物における初成土壌微生物生態系のメタゲノム解析2011

    • Author(s)
      藤村玲子,金錫元,郭永,佐藤嘉則,細川 研,須田亙,大島健志朗,服部正平,上條隆志,太田寛行
    • Organizer
      日本微生物生態学会第27回大会
    • Place of Presentation
      京都大学、京都市
    • Year and Date
      2011-10-09
    • Related Report
      2012 Final Research Report
  • [Presentation] Metagenomic analysis of microbial succession on fresh volcanic ash deposits in the Island of Miyake2011

    • Author(s)
      Reiko Fujimura, Seokwon Kim, Yong Guo, Yoshinori Sato, Ken Hosokawa, Wataru Suda, Erika Iioka, Kenshiro Ohshima, Masahira Hattori, Takashi Kamijo and Hiroyuki Ohta
    • Organizer
      Japan, 20th International Symposium on Environmental Biogeochemistry
    • Place of Presentation
      イスタンブール工科大学,イスタンブール
    • Year and Date
      2011-09-28
    • Related Report
      2012 Final Research Report
  • [Presentation] ACTIVEBACTERIAL AND ARCHAEAL COMMUNITIES RESPONDED TO WATERLOGGING OR DRAINAGE IN RICE PADDY SOIL, AS REVEALED BY COMPARATIVE LARGE-SCALE CLONE LIBRARY ANALYSIS2011

    • Author(s)
      Hideomi Itoh, Satoshi Ishii, Yutaka Shiratori, Kenshiro Oshima, Shigeto Otuka, Masahira Hattori, and Keishi Senoo
    • Organizer
      International Union of Microbiological Societies 2011 Congress
    • Place of Presentation
      札幌国際会議場、札幌
    • Year and Date
      2011-09-08
    • Related Report
      2012 Final Research Report
  • [Presentation] Relationship between development of bacterial community and vegetation succession on early soil ecosystem in the Island of Miyake, Japan2011

    • Author(s)
      郭永,藤村玲子,細川研,佐藤嘉則,西澤智康 , 上條隆志 , 太田寛行
    • Organizer
      日本土壌肥料学会 2011 年度つくば大会
    • Place of Presentation
      筑波大学、つくば市
    • Year and Date
      2011-08-09
    • Related Report
      2012 Final Research Report
  • [Presentation] Seasonal transition of active microbial communities in rice paddy soil, as revealed by metatranscriptomic approach2011

    • Author(s)
      Hideomi Itoh, Satoshi Ishii, Kenshiro Oshima, Yutaka Shiratori, Shigeto Otsuka, Masahira Hattori, and Keishi Senoo
    • Organizer
      11th Conference on Bacterial Genetics and Ecology
    • Place of Presentation
      Corfu, ギリシャ
    • Year and Date
      2011-06-01
    • Related Report
      2012 Final Research Report 2011 Annual Research Report
  • [Presentation] Metagenomic and metatranscriptomic analysis of microbial communities in rice paddy soil2011

    • Author(s)
      Hideomi Itoh, Satoshi Ishii, Kenshiro Oshima, Yutaka Shiratori, Shigeto Otsuka, Masahira Hattori, and Keishi Senoo
    • Organizer
      The first International EMP (Earth Microbiome Project) Conference
    • Place of Presentation
      Shenzhen, 中国
    • Related Report
      2011 Annual Research Report
  • [Presentation] Phylogenic andmetabolic analysis of microbial communities in paddy soil through comparative metagenomics2010

    • Author(s)
      Hideomi Itoh, Satoshi Ishii, Kenshiro Oshima, Yutaka Shiratori, Shigeto Otuka, Masahira Hattori, and Keishi Senoo
    • Organizer
      Soil Metagenomics 2010
    • Place of Presentation
      Braunschweig, Germany
    • Year and Date
      2010-12-09
    • Related Report
      2012 Final Research Report
  • [Presentation] Phylogenic and metabolic analysis of microbial communities in paddy soil through comparative metagenomics2010

    • Author(s)
      Hideomi Itoh, Satoshi Ishii, Kenshiro Oshima, Yutaka Shiratori, Shigeto Otuka, Masahira Hattori, Keishi Senoo
    • Organizer
      Soil Metagenomics 2010
    • Place of Presentation
      Braunschweig, Germany
    • Year and Date
      2010-12-09
    • Related Report
      2010 Annual Research Report
  • [Presentation] 水田土壌のメタゲノム解析2010

    • Author(s)
      伊藤英臣、石井聡、大島健志朗、白鳥豊、 大 塚重人、服部正 平 、妹尾啓史
    • Organizer
      第26回日本微生物生態学 会大会(つくば)
    • Place of Presentation
      筑波大学
    • Year and Date
      2010-11-25
    • Related Report
      2012 Final Research Report
  • [Presentation] 水田土壌のメタゲノム解析2010

    • Author(s)
      伊藤英臣、石井聡、大島健志朗、白鳥豊、大塚重人、服部正平、妹尾啓史
    • Organizer
      第26回日本微生物生態学会大会(つくば)
    • Place of Presentation
      筑波大学
    • Year and Date
      2010-11-25
    • Related Report
      2010 Annual Research Report
  • [Presentation] Analysis of bacterial community in early stage of soil ecosystem after the 2000 volcanic eruption in Miyake-jima Island, Japan2010

    • Author(s)
      Yong Guo, Reiko Fujimura, Ken Hosokawa, Yoshinori Sato, Tomoyasu Nishizawa, Takashi Kamijo, Hiroyuki Ohta
    • Organizer
      第26回日本微生物生態学会大会(つくば)
    • Place of Presentation
      筑波大学
    • Year and Date
      2010-11-25
    • Related Report
      2010 Annual Research Report
  • [Presentation] Thinking about ecological species and ecotype of bacteria2010

    • Author(s)
      Hiroyuki OHTA, Tomoyasu NISHIZAWA, Reiko FUJIMURA, Yoshinori SATO
    • Organizer
      第26回日本微生物生態学会大会(つくば)
    • Place of Presentation
      筑波大学
    • Year and Date
      2010-11-25
    • Related Report
      2010 Annual Research Report
  • [Presentation] 農業環境分野へのメタゲノム解析の展開2010

    • Author(s)
      妹尾啓 史 ・石井聡・伊藤英臣
    • Organizer
      日本水産学会2010 年度秋季大会シンポジウム
    • Place of Presentation
      京都大学
    • Year and Date
      2010-09-25
    • Related Report
      2012 Final Research Report
  • [Presentation] 農業環境分野へのメタゲノム解析の展開2010

    • Author(s)
      妹尾啓史・石井聡・伊藤英臣
    • Organizer
      日本水産学会2010年度秋季大会シンポジウム
    • Place of Presentation
      京都大学
    • Year and Date
      2010-09-25
    • Related Report
      2010 Annual Research Report
  • [Presentation] 農耕地土壌の細菌・古細菌群集構造の季節動態2010

    • Author(s)
      伊藤英臣、白鳥豊、服部正平、石井聡、大塚重人、妹尾啓史
    • Organizer
      日本土壌肥料学会2010年度札幌大会
    • Place of Presentation
      北海道大学
    • Year and Date
      2010-09-08
    • Related Report
      2010 Annual Research Report
  • [Presentation] Characterization of soil microbial community in the early soil ecosystem in Miyake Island, Japan2010

    • Author(s)
      Yong Guo, Reiko Fujimura, Ken Hosokawa, Yoshinori Sato, Tomoyasu Nishizawa, Takashi Kamijo, and Hiroyuki Ohta
    • Organizer
      日本土壌肥料学会2010年度札幌大会
    • Place of Presentation
      北海道大学
    • Year and Date
      2010-09-07
    • Related Report
      2012 Final Research Report 2010 Annual Research Report
  • [Presentation] MICROBIAL COMMUNITY STRUCTURE IN VOLCANICDEPOSITS WITH DIFFERENT SUCCESSION STAGES OF VEGETATION RECOVERY IN MIYAKE ISLAND, JAPAN2010

    • Author(s)
      Yong Guo, Reiko Fujimura, Ken Hosokawa, Yoshinori Sato, Tomoyasu Nishizawa, Takashi Kamijo, and Hiroyuki Ohta
    • Organizer
      13th International Symposium on Microbial Ecology
    • Place of Presentation
      Seattle, WA, USA
    • Year and Date
      2010-08-26
    • Related Report
      2012 Final Research Report
  • [Presentation] NITROGEN FIXATION BY IRON-OXIDIZING BACTERIA DURING EARLY ECOSYSTEM DEVELOPMENT ON MIYAKE-JIMA2010

    • Author(s)
      Reiko Fujimura, Yoshinori Sato, Tomonori Sugawara, Ken Hosokawa, Tomoyasu Nishizawa, Kenji Nanba, Takashi Kamijo, Bill Holben and Hiroyuki Ohta
    • Organizer
      JAPAN, 13th International Symposium on Microbial Ecology
    • Place of Presentation
      Seattle, WA, USA
    • Year and Date
      2010-08-26
    • Related Report
      2012 Final Research Report
  • [Presentation] MICROBIAL COMMUNITY STRUCTURE IN VOLCANIC DEPOSITS WITH DIFFERENT SUCCESSION STAGES OF VEGETATION RECOVERY IN MIYAKE ISLAND, JAPAN2010

    • Author(s)
      Yong Guo, Reiko Fujimura, Ken Hosokawa, Yoshinori Sato, Tomoyasu Nishizawa, Takashi Kamijo, Hiroyuki Ohta
    • Organizer
      13th International Symposium on Microbial Ecology
    • Place of Presentation
      Seattle, WA, USA
    • Year and Date
      2010-08-26
    • Related Report
      2010 Annual Research Report
  • [Presentation] NITROGEN FIXATION BY IRON-OXIDIZING BACTERIA DURING EAELY ECOSYSTEM DEVELOPMENT ON MIYAKE-JIMA, JAPAN VOLCANIC DEPOSITS2010

    • Author(s)
      Reiko Fujimura, Yoshinori Sato, Tomonori Sugawara, Ken Hosokawa, Tomoyasu Nishizawa, Kenji Nanba, Takashi Kamijo, Bill Holben, Hiroyuki Ohta
    • Organizer
      13th International Symposium on Microbial Ecology
    • Place of Presentation
      Seattle, WA, USA
    • Year and Date
      2010-08-26
    • Related Report
      2010 Annual Research Report
  • [Presentation] SEASONAL TRANSITION OF BACTERIA, ARCHAEA, AND EUKARYOTE COMMUNITIES ALONG REDOX POTENTIAL CHANGES IN RICE PADDY SOIL2010

    • Author(s)
      Hideomi Itoh, Yutaka Shiratori, Satoshi Ishii, Shigeto Otsuka, Keishi Senoo
    • Organizer
      13th International Symposium on Microbial Ecology
    • Place of Presentation
      Seattle, WA, USA
    • Year and Date
      2010-08-25
    • Related Report
      2012 Final Research Report 2010 Annual Research Report
  • [Presentation] 水田土壌における逐次還元反応と微生物群集の季節動態2010

    • Author(s)
      伊藤英臣、白鳥豊、石井聡、大塚重人、妹尾啓史
    • Organizer
      日本土壌微生物学会2010年度大会(東京)
    • Place of Presentation
      東京大学
    • Year and Date
      2010-05-21
    • Related Report
      2010 Annual Research Report
  • [Presentation] Metagenomic and metatranscriptomic analysis of microbial communities in rice paddy soil

    • Author(s)
      Hideomi Itoh and Keishi Senoo
    • Organizer
      Japan-China International Symposium of Biotechnology on Agriculture and Environment
    • Place of Presentation
      東京大学、東京
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Bacterial community of the fresh volcanic deposits on barren land, grassland, and woodland in the Island of Miyake, Japan, as revealed by pyrosequencing-based analysis of 16S rRNA genes

    • Author(s)
      Yong Guo, Reiko Fujimura, Yoshinori Sato, Kenshiro Oshima, Masahira Hattori, Takashi Kamijo, Hiroyuki Ohta
    • Organizer
      14th International Symposium on Microbial Ecology
    • Place of Presentation
      ベラ,センター,コペンハーゲン
    • Related Report
      2012 Annual Research Report
  • [Presentation] Effect of vegetation cover on bacterial diversity of volcanic deposits in Miyake-jima, Japan

    • Author(s)
      Yong Guo, Reiko Fujimura, Yoshinori Sato, Wataru Suwata, Kenshiro Oshima, Masahira Hattori, Takashi Kamijo, Hiroyuki Ohta
    • Organizer
      日本土壌肥料学会2012年度鳥取大会
    • Place of Presentation
      鳥取大学,鳥取市
    • Related Report
      2012 Annual Research Report
  • [Presentation] 土壌水分含量が畑地土壌のin vitro脱窒活性に及ぼす影響の解析

    • Author(s)
      太田寛行,新美洋,橋本知義,梅津昌史,奈良岡雅大,佐藤嘉則,西澤智康,赤池恵,藤村玲子,小松崎将一,金子信博
    • Organizer
      日本土壌肥料学会2012年度鳥取大会
    • Place of Presentation
      鳥取大学,鳥取市
    • Related Report
      2012 Annual Research Report
  • [Presentation] 三宅島2000 年噴火後の植生回復への菌類エンドファイトの関わりについて

    • Author(s)
      臼井絵里香,太田寛行,成澤才彦
    • Organizer
      第28回日本微生物生態学会大会
    • Place of Presentation
      豊橋技術科学大学,豊橋市
    • Related Report
      2012 Annual Research Report
  • [Presentation] メタゲノム解析から明らかにされた三宅島初成土壌微生物生態系の遷移

    • Author(s)
      藤村玲子,金錫元,佐藤 嘉則,須田亙,西澤 智康,大島健志朗,服部正平,上條隆志,太田寛行
    • Organizer
      第28回日本微生物生態学会大会
    • Place of Presentation
      豊橋技術科学大学,豊橋市
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 基質誘導呼吸法を用いた土壌モデル系での異なる農地土壌における真菌類の亜酸化窒素生成活性の比較

    • Author(s)
      奈良岡雅大,佐藤嘉則,新美洋,橋本知義,石川美友紀,太田寛行
    • Organizer
      第28回日本微生物生態学会大会
    • Place of Presentation
      豊橋技術科学大学,豊橋市
    • Related Report
      2012 Annual Research Report
  • [Presentation] スラリー長期連用圃場における土壌微生物生態系のメタゲノム解析

    • Author(s)
      石川美友紀,藤村玲子,新美洋,橋本知義,金 錫元,須田亙,大島健志朗,服部正平,太田 寛行
    • Organizer
      第28回日本微生物生態学会大会
    • Place of Presentation
      豊橋技術科学大学,豊橋市
    • Related Report
      2012 Annual Research Report
  • [Presentation] メタゲノム解析による水田脱窒機構の解明

    • Author(s)
      妹尾啓史、吉田愛美、伊藤英臣
    • Organizer
      農業環境技術研究所公開セミナー 微生物ゲノム情報の活用による温室効果ガス研究の新展開
    • Place of Presentation
      つくば国際会議場、つくば市
    • Related Report
      2011 Annual Research Report
    • Invited
  • [Presentation] ACTIVE BACTERIAL AND ARCHAEAL COMMUNITIES RESPONDED TO WATERLOGGING OR DRAINAGE IN RICE PADDY SOIL, AS REVEALED BY COMPARATIVE LARGE-SCALE CLONE LIBRARY ANALYSIS

    • Author(s)
      Hideomi Itoh, Satoshi Ishii, Yutaka Shiratori, Kenshiro Oshima, Shigeto Otuka, Masahira Hattori, and Keishi Senoo
    • Organizer
      International Union of Microbiological Societies 2011 Congress
    • Place of Presentation
      札幌国際会議場、札幌
    • Related Report
      2011 Annual Research Report
    • Invited
  • [Presentation] Relationship between development of bacterial community and vegetation succession on early soil ecosystem in the Island of Miyake, Japan

    • Author(s)
      郭永,藤村玲子,細川研,佐藤嘉則,西澤智康,上條隆志,太田寛行
    • Organizer
      日本土壌肥料学会2011年度つくば大会
    • Place of Presentation
      茨城大学、つくば市
    • Related Report
      2011 Annual Research Report
  • [Presentation] Metagenomic analysis of microbial succession on fresh volcanic ash deposits in the Island of Miyake, Japan

    • Author(s)
      Reiko Fujimura, Seokwon Kim, Yong Guo, Yoshinori Sato, Ken Hosokawa, Wataru Suda, Erika Iioka, Kenshiro Ohshima, Masahira Hattori, Takashi Kamijo and Hiroyuki Ohta
    • Organizer
      20th International Symposium on Environmental Biogeochemistry
    • Place of Presentation
      イスタンブール工科大学,イスタンブール
    • Related Report
      2011 Annual Research Report
  • [Presentation] Continuous in vitro measurement of soil N2O production in a headspace gas-circulating jar system connected to an infrared gas analyzer

    • Author(s)
      Masahiro Naraoka, Yoshinori Sato, Megumi Akaike, Hiroyuki Ohta
    • Organizer
      20th International Symposium on Environmental Biogeochemistry
    • Place of Presentation
      イスタンブール工科大学,イスタンブール
    • Related Report
      2011 Annual Research Report
  • [Presentation] 三宅島2000年噴火火山灰堆積物における初成土壌微生物生態系のメタゲノム解析

    • Author(s)
      藤村玲子,金錫元,郭永,佐藤嘉則,細川研,須田亙,大島健志朗,服部正平,上條隆志,太田寛行
    • Organizer
      日本微生物生態学会第27回大会
    • Place of Presentation
      京都大学,京都市
    • Related Report
      2011 Annual Research Report
  • [Presentation] 微生物多様性研究の現状と可能性:土壌微生物研究からの考察

    • Author(s)
      太田寛行,藤村玲子
    • Organizer
      日本微生物生態学会第27回大会
    • Place of Presentation
      京都大学,京都市
    • Related Report
      2011 Annual Research Report
  • [Presentation] 基質誘導呼吸阻害法を用いた土壌モデル系での細菌と糸状菌の亜酸化窒素生成活性の解析

    • Author(s)
      奈良岡雅大,佐藤嘉則,赤池恵,太田寛行
    • Organizer
      日本微生物生態学会第27回大会
    • Place of Presentation
      京都大学,京都市
    • Related Report
      2011 Annual Research Report
  • [Presentation] 三宅島2000年噴火堆積物から分離された鉄酸化細菌Leptospirillum ferrooxidans C2-3株のゲノム解析

    • Author(s)
      藤村玲子,佐藤嘉則,細川研,西澤智康,大島健志朗,服部正平,上條隆志,太田寛行
    • Organizer
      日本土壌微生物学会2011年度大会
    • Place of Presentation
      鳴子公民館,大崎市
    • Related Report
      2011 Annual Research Report
  • [Presentation] 土壌モデルを利用した畑地土壌における糸状菌の亜酸化窒素生成の解析

    • Author(s)
      奈良岡雅大,佐藤嘉則,赤池恵,太田寛行
    • Organizer
      日本土壌微生物学会2011年度大会
    • Place of Presentation
      鳴子公民館,大崎市
    • Related Report
      2011 Annual Research Report
  • [Presentation] 不耕起畑地土壌より分離した糸状菌株の亜酸化窒素生成活性

    • Author(s)
      赤池恵,鶴田和人,佐藤嘉則,西村歩,小松崎将一,太田寛行
    • Organizer
      日本土壌微生物学会2011年度大会
    • Place of Presentation
      鳴子公民館,大崎市
    • Related Report
      2011 Annual Research Report
  • [Book] 水田土壌のメタゲノム解析、In メタゲノム解析技術の最前線2010

    • Author(s)
      伊藤英臣、石井聡、妹尾啓史
    • Publisher
      シーエムシー出版
    • Related Report
      2012 Final Research Report
  • [Book] メタゲノム解析技術の最前線2010

    • Author(s)
      伊藤英臣・石井聡・妹尾啓史
    • Total Pages
      231
    • Publisher
      シー・エム・シー出版
    • Related Report
      2010 Annual Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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