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Comprehensive genetic analysis of hearing loss using next generation sequencer.

Research Project

Project/Area Number 22249057
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Otorhinolaryngology
Research InstitutionShinshu University

Principal Investigator

USAMI Shinichi  信州大学, 医学部, 教授 (10184996)

Co-Investigator(Kenkyū-buntansha) KUMAKAWA Kozo  (財)冲中記念成人病研究所, 虎の門病院, 研究員 (40142252)
SATO Hiroaki  岩手医科大学, 医学部, 教授 (40215827)
TONO Tetsuya  宮崎大学, 宮崎大学, 教授 (80145424)
FURUYA Nobuhiko  群馬大学, 医学部, 教授 (80107606)
NAGAI Kyoko  群馬大学, 医学部, 助教 (50302469)
TAKUMI Yutaka  信州大学, 医学部, 准教授 (70312501)
MOTEKI Hideaki  信州大学, 医学部, 助教 (60422698)
Co-Investigator(Renkei-kenkyūsha) MIYAKAWA Maiko  信州大学, 医学部附属病院, 助教(特定雇用) (60467165)
NAITO Takehiko  信州大学, 医学部附属病院, 助教(特定雇用) (50467164)
NISHIO Shinya  信州大学, 医学部, 助教(特定雇用) (70467166)
Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥48,100,000 (Direct Cost: ¥37,000,000、Indirect Cost: ¥11,100,000)
Fiscal Year 2012: ¥10,140,000 (Direct Cost: ¥7,800,000、Indirect Cost: ¥2,340,000)
Fiscal Year 2011: ¥16,900,000 (Direct Cost: ¥13,000,000、Indirect Cost: ¥3,900,000)
Fiscal Year 2010: ¥21,060,000 (Direct Cost: ¥16,200,000、Indirect Cost: ¥4,860,000)
Keywords耳科学 / 次世代シークエンサー / 遺伝子 / 難聴 / 内耳 / 感音難聴 / 細胞外マトリソクス
Research Abstract

Target exon resequencing using Massively Parallel DNA Sequencing (MPS) is a new powerful strategy to discover causative genes in rare Mendelian disorders such as deafness. We attempted to identify genomic variations responsible for deafness by massive sequencing of the exons of the 112 target candidate genes. By the analysis of 216 (120 early-onset and 96 late-detected) randomly selected Japanese deafness patients, who had already been evaluated for common genes/mutations, we efficiently identified causative mutations and/or mutation candidates in 51 genes that could be used to initiate searching for responsible genes. Approximately 63.4% (137/216) of the patients had at least one mutation.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (53 results)

All 2013 2012 2011 2010

All Journal Article (18 results) (of which Peer Reviewed: 14 results) Presentation (34 results) Book (1 results)

  • [Journal Article] Comprehensive Genetic Screening of KCNQ4 in a Large Autosomal Dominant Nonsyndromic Hearing Loss Cohort: Genotype-Phenotype Correlations and a Founder Mutation2013

    • Author(s)
      aito T, Nishio SY, Iwasa Y, Yano T,Kumakawa K, Abe S, Ishikawa K, Kojima H, Namba A, Oshikawa C, Usami S
    • Journal Title

      PLoS One

      Volume: 8(5) Issue: 5 Pages: e63231-e63231

    • DOI

      10.1371/journal.pone.0063231

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Prevalence and clinical features of hearing loss patients with CDH23 mutations: a large cohort study2012

    • Author(s)
      iyagawa M, Nishio SY, Usami S.
    • Journal Title

      PLoS One

      Volume: 7(8) Issue: 8 Pages: e40366-e40366

    • DOI

      10.1371/journal.pone.0040366

    • NAID

      120007108255

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] TECTA mutations in Japanese with mid-frequency hearing loss affected by zona pellucida domain protein secretion2012

    • Author(s)
      Moteki H, Nishio SY, Hashimoto S, Takumi Y, Iwasaki S, Takeichi N, Fukuda S, Usami S.
    • Journal Title

      J Hum Genet

      Volume: 57(9) Issue: 9 Pages: 587-92

    • DOI

      10.1038/jhg.2012.73

    • NAID

      10031056980

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Patients with CDH23 mutation and the 1555A>G mitochondrial mutation are good candidates for electric acoustic stimulation (EAS)2012

    • Author(s)
      Usami S., Miyagawa M., Nishio S., Moteki H., Takumi Y., Suzuki M., Kitano Y., Iwasaki S.
    • Journal Title

      Acta Otolaryngol

      Volume: 132 Issue: 4 Pages: 377-384

    • DOI

      10.3109/00016489.2011.649493

    • NAID

      120007110630

    • Related Report
      2012 Annual Research Report 2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Deafness Gene Study Consortium. Simultaneous screening of multiple mutations by invader assay improves molecular diagnosis of hereditary hearing loss: a multicenter study.2012

    • Author(s)
      Usami S, Nishio SY, Nagano M, Abe S, Yamaguchi T
    • Journal Title

      PLoS One

      Volume: 7(2) Issue: 2 Pages: 1-8

    • DOI

      10.1371/journal.pone.0031276

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Mutations in the NOG gene are commonly found in congenital stapes ankylosis with symphalangism, but not in otosclerosis2012

    • Author(s)
      Usami S, Abe S, Nishio S, Sakurai Y, Kojima H, Tono T, Suzuki N
    • Journal Title

      Clin Genet.

      Volume: 82(6) Issue: 6 Pages: 514-20

    • DOI

      10.1111/j.1399-0004.2011.01831.x

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 残存聴力活用型人工内耳(EAS:electric acoustic stimulation)~低侵襲手術、聴力保存成績、術後聴取能、遺伝的背景について~2012

    • Author(s)
      宇佐美真一
    • Journal Title

      耳鼻臨床

      Volume: 133 Pages: 312-312

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] 両側性特発性感音難聴2012

    • Author(s)
      宇佐美真一
    • Journal Title

      JOHNS

      Volume: 28(5) Pages: 775-778

    • Related Report
      2012 Final Research Report
  • [Journal Article] 難聴遺伝子はどこまで解明されたのか2012

    • Author(s)
      宇佐美真一
    • Journal Title

      JOHNS.

      Volume: 28(3) Pages: 292-293

    • Related Report
      2012 Final Research Report
  • [Journal Article] 難聴と遺伝子2012

    • Author(s)
      宇佐美真一
    • Journal Title

      耳喉頭頸

      Volume: 84 Pages: 883-890

    • Related Report
      2012 Annual Research Report
  • [Journal Article] 人工内耳埋め込み術を行ったCDH23遺伝子変異による難聴症例2012

    • Author(s)
      宮川麻衣子、茂木英明、工穣、宇佐美真一
    • Journal Title

      耳喉頭頸

      Volume: 84 Pages: 59-63

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Different cortical metabolic activation by visual stimuli possibly due to different time courses of hearing loss in patients with GJB2 and SLC26A4 mutations2011

    • Author(s)
      Moteki H, Naito Y, Fujiwara K, Kitoh R, Nishio S Y, Oguchi K, Takumi Y, Usami SI
    • Journal Title

      Acta Oto-Laryngol

      Volume: 131 Issue: 11 Pages: 1232-1236

    • DOI

      10.3109/00016489.2011.593719

    • NAID

      120007110633

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 残存聴力活用型人工内耳(electric acoustic stimulation) ~手術法と聴力保存成績について~2011

    • Author(s)
      宇佐美真一、茂木英明、宮川麻衣子、内藤武彦、西尾信哉、工 穣、岩崎聡
    • Journal Title

      Otol Jpn

      Volume: 21(5) Pages: 763-770

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] 補聴器と人工内耳の融合残存聴力活用型人工内耳について2011

    • Author(s)
      宇佐美真一
    • Journal Title

      耳鼻咽喉科・頭頸部外科

      Volume: 83(6) Pages: 393-401

    • Related Report
      2012 Final Research Report
  • [Journal Article] 難聴の遺伝子診断2011

    • Author(s)
      宇佐美真一
    • Journal Title

      Audiology Japan

      Volume: 54 Pages: 44-55

    • NAID

      10029001688

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 難聴の遺伝子診断2011

    • Author(s)
      宇佐美真一
    • Journal Title

      日本臨牀

      Volume: 69(2) Pages: 357-367

    • NAID

      10029001688

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Clinical profile of hearing loss in children with congenital cytomegalovirus (CMV) infection : CMV DNA diagnosis using preserved umbilical cord2011

    • Author(s)
      Furutate S, Iwasaki s, Nishio S, Moteki H, Usami S
    • Journal Title

      Acta Oto-Laryngol

      Volume: 131 Issue: 9 Pages: 976-782

    • DOI

      10.3109/00016489.2011.583268

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Deafness Gene Study Consortium. A large cohort study of GJB2 mutations in Japanese hearing loss patients.2010

    • Author(s)
      Tsukada K, Nishio S, Usami S
    • Journal Title

      Clin Genet

      Volume: 78(5) Issue: 5 Pages: 464-70

    • DOI

      10.1111/j.1399-0004.2010.01407.x

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Presentation] 次世代シーケンサーによる難聴の遺伝子解析(1)~方法論および変異検出アルゴリズムについて~2012

    • Author(s)
      西尾信哉、宮川麻衣子、内藤武彦、宇佐美真一
    • Organizer
      第22回日本耳科学会総会
    • Place of Presentation
      名古屋国際会議場
    • Related Report
      2012 Final Research Report
  • [Presentation] 次世代シーケンサーによる難聴の遺伝子解析(2)~見出された原因遺伝子および表現型について~2012

    • Author(s)
      宮川麻衣子、内藤武彦、西尾信哉、宇佐美真一
    • Organizer
      第22回日本耳科学会総会
    • Place of Presentation
      名古屋国際会議場
    • Related Report
      2012 Final Research Report
  • [Presentation] ミトコンドリア遺伝子全領域シーケンスによる難聴の遺伝子解析2012

    • Author(s)
      矢野卓也、西尾信哉、宇佐美真一
    • Organizer
      第22回日本耳科学会総会
    • Place of Presentation
      名古屋国際会議場
    • Related Report
      2012 Final Research Report
  • [Presentation] MYO15A 遺伝子変異を認めた両側高度感音難聴の1症例2012

    • Author(s)
      矢野卓也、小林有美子、佐藤宏明、宇佐美真一
    • Organizer
      第74回耳鼻咽喉科臨床学会
    • Place of Presentation
      東京ドームホテル
    • Related Report
      2012 Final Research Report
  • [Presentation] Mutation spectrum and clinical characteristics of hearing loss patients caused by SLC26A4 mutations: a large cohort study.2012

    • Author(s)
      iyagawa M,Nishio S,Fukuoka H, Tsukada K, Usami S
    • Organizer
      27th Barany Society Meeting
    • Place of Presentation
      Uppsala,Sweden
    • Related Report
      2012 Final Research Report
  • [Presentation] 難聴のパーソナル医療:遺伝子診断から人工内耳まで2012

    • Author(s)
      宇佐美真一
    • Organizer
      第36回 日本遺伝カウンセリング学会
    • Place of Presentation
      信大附属病院外来棟 4F
    • Related Report
      2012 Final Research Report
  • [Presentation] 日本人高度感音難聴患者における OTOF 遺伝子変異の頻度の検討2012

    • Author(s)
      岩佐陽一郎、宇佐美真一
    • Organizer
      第113回日本耳鼻咽喉科学会総会・学術講演会
    • Related Report
      2012 Final Research Report
  • [Presentation] 難聴の遺伝子診断の進歩と臨床応用2012

    • Author(s)
      宇佐美真一
    • Organizer
      第116回日本眼科学会総会
    • Place of Presentation
      東京国際フォーラム
    • Related Report
      2012 Final Research Report
  • [Presentation] Genetics and presbycusis2012

    • Author(s)
      Usami S
    • Organizer
      Presbycusis Reseach Meetings 2012
    • Place of Presentation
      ミュンヘン/ドイツ
    • Related Report
      2012 Final Research Report
  • [Presentation] 日本人高度感音難聴患者におけるOTOF遺伝子変異の頻度の検討2012

    • Author(s)
      岩佐陽一郎
    • Organizer
      第113回日本耳鼻咽喉科学会総会・学術講演会
    • Place of Presentation
      朱鷺メッセ(新潟市)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 先天性高度感音難聴小児例におけるMYO7A遺伝子解析2012

    • Author(s)
      吉村豪兼
    • Organizer
      第113回日本耳鼻咽喉科学会総会・学術講演会
    • Place of Presentation
      朱鷺メッセ(新潟市)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 難聴のパーソナル医療:遺伝子診断から人工内耳まで2012

    • Author(s)
      宇佐美真一
    • Organizer
      第36回 日本遺伝カウンセリング学会
    • Place of Presentation
      信州大学(松本市)
    • Related Report
      2012 Annual Research Report
  • [Presentation] Mutation spectrum and clinical characteristics of hearing loss patients caused by SLC26A4 mutations: a large cohort study2012

    • Author(s)
      Miyagawa M,Nishio S,Fukuoka H, Tsukada K, Usami S.
    • Organizer
      27th Barany Society Meeting
    • Place of Presentation
      Uppsala,Sweden
    • Related Report
      2012 Annual Research Report
  • [Presentation] 次世代シーケンサーによる難聴の遺伝子解析(1)~方法論および変異検出アルゴリズムについて~2012

    • Author(s)
      西尾信哉、宮川麻衣子、内藤武彦、宇佐美真一
    • Organizer
      第22回日本耳科学会総会
    • Place of Presentation
      名古屋国際会議場
    • Related Report
      2012 Annual Research Report
  • [Presentation] 次世代シーケンサーによる難聴の遺伝子解析(2)~見出された原因遺伝子および表現型について~2012

    • Author(s)
      宮川麻衣子、内藤武彦、西尾信哉、宇佐美真一
    • Organizer
      第22回日本耳科学会総会
    • Place of Presentation
      名古屋国際会議場
    • Related Report
      2012 Annual Research Report
  • [Presentation] Genetic diagnosis of Japanese congenital deafness using Invader assay2011

    • Author(s)
      Yutaka Takumi, Shinichi Usami
    • Organizer
      11^<th> Japan-Taiwan Conference on Otolaryngology-Head and Neck Surgery
    • Place of Presentation
      神戸
    • Year and Date
      2011-12-08
    • Related Report
      2011 Annual Research Report
  • [Presentation] 日本人難聴患者に見出されたSLC26A4遺伝子変異のスペクトラム2011

    • Author(s)
      宮川麻衣子、西尾信哉、鈴木宏明、宇佐美真一
    • Organizer
      第21回日本耳科学会総会
    • Place of Presentation
      沖縄
    • Year and Date
      2011-11-25
    • Related Report
      2011 Annual Research Report
  • [Presentation] 先進医療「先天性難聴の遺伝子診断」の現状2011

    • Author(s)
      工穣、岩佐陽一郎、吉村豪兼、矢野卓也、内藤武彦、宮川麻衣子、茂木英明、西尾信哉、宇佐美真一
    • Organizer
      第56回日本聴覚医学会総会・学術講演会
    • Place of Presentation
      福岡
    • Year and Date
      2011-10-27
    • Related Report
      2011 Annual Research Report
  • [Presentation] The genetic background of the patients with cochlear implantation2011

    • Author(s)
      Shin-ichi Usami
    • Organizer
      The 8th Asia Pacific Symposium on Cochlear Implant and Related science (APSCI 2011)
    • Place of Presentation
      韓国
    • Year and Date
      2011-10-26
    • Related Report
      2011 Annual Research Report
  • [Presentation] Genetics markers and hearing preservation2011

    • Author(s)
      Shin-ichi Usami
    • Organizer
      Collegium Oto-Rhino-laryngologium Amicitiae Sacrum
    • Place of Presentation
      ベルギー
    • Year and Date
      2011-09-05
    • Related Report
      2011 Annual Research Report
  • [Presentation] 難聴の遺伝子解析と臨床応用に関する研究2011

    • Author(s)
      Shin-ichi Usami
    • Organizer
      北京国際耳科学会
    • Place of Presentation
      北京(招待講演)
    • Year and Date
      2011-08-04
    • Related Report
      2011 Annual Research Report
  • [Presentation] Genetics markers and hearing preservation with Japanese children2011

    • Author(s)
      Shin-ichi Usami
    • Organizer
      13th Symposium on Cochlear Implants Children
    • Place of Presentation
      シカゴ
    • Year and Date
      2011-07-14
    • Related Report
      2011 Annual Research Report
  • [Presentation] 信州大学における難聴医療の現況2011

    • Author(s)
      宮川麻衣子、茂木英明、工穣、宇佐美真一
    • Organizer
      第73回耳鼻咽喉科臨床学会
    • Place of Presentation
      松本
    • Year and Date
      2011-06-23
    • Related Report
      2011 Annual Research Report
  • [Presentation] 人工内耳の新しい流れ: EAS と低侵襲手術2011

    • Author(s)
      宇佐美真一
    • Organizer
      第21回日本耳科学会総会
    • Place of Presentation
      沖縄コンベンションセンター
    • Related Report
      2012 Final Research Report
  • [Presentation] The genetic background of the patients with cochlear implantation2011

    • Author(s)
      Usami S
    • Organizer
      The 8th Asia Pacific Symposium on Cochlear Implant and Related science(APSCI 2011)
    • Place of Presentation
      Korea
    • Related Report
      2012 Final Research Report
  • [Presentation] Achievement of hearing preservation in the presence of an electrode covering the residual hearing region.2011

    • Author(s)
      Usami S
    • Organizer
      The 8th Asia Pacific Symposium on Cochlear Implant and Related science(APSCI 2011)
    • Place of Presentation
      Korea
    • Related Report
      2012 Final Research Report
  • [Presentation] Genetic markers and hearing preservation Collegium2011

    • Author(s)
      Usami S
    • Organizer
      Oto-Rhino-laryngologium Amicitiae Sacrum
    • Place of Presentation
      ベルギー
    • Related Report
      2012 Final Research Report
  • [Presentation] 難聴の遺伝子解析と臨床応用に関する研究2011

    • Author(s)
      Usami S
    • Organizer
      北京国際耳科学会
    • Place of Presentation
      北京/中国
    • Related Report
      2012 Final Research Report
  • [Presentation] Genetics markers and hearing preservation with Japanese children.13th Symposium on Cochlear2011

    • Author(s)
      Usami S
    • Organizer
      Implants Children
    • Place of Presentation
      シカゴ/アメリカ
    • Related Report
      2012 Final Research Report
  • [Presentation] The responsible genes for Japanese deafness patients and clinical application using Invader assay2010

    • Author(s)
      Usami S
    • Organizer
      2nd East Asian Symposium in Otology
    • Place of Presentation
      国立台湾大学/台湾
    • Related Report
      2012 Final Research Report
  • [Presentation] 遺伝性難聴2010

    • Author(s)
      宇佐美真一
    • Organizer
      日本人類遺伝学会
    • Place of Presentation
      大宮
    • Related Report
      2012 Final Research Report
  • [Presentation] Gene expression pattern after insertion of dexamethasone eluting electrode2010

    • Author(s)
      Usami S
    • Organizer
      HEARING PRESERVATION WORKSHOP IX
    • Place of Presentation
      MIAMI,FLORIDA/アメリカ
    • Related Report
      2012 Final Research Report
  • [Presentation] 福島邦博先進医療(先天性難聴の遺伝子診断)の現況2010

    • Author(s)
      宇佐美真一、熊川孝三、東野哲也
    • Organizer
      第111回日本耳鼻咽喉科科学会総会・学術講演会
    • Place of Presentation
      仙台国際センター
    • Related Report
      2012 Final Research Report
  • [Presentation] Gene-related hearing loss and cochlear implantation in Japan2010

    • Author(s)
      Usami S
    • Organizer
      シーボルト記念シンポジウム
    • Place of Presentation
      長崎大学
    • Related Report
      2012 Final Research Report
  • [Book] きこえと遺伝子22012

    • Author(s)
      宇佐美真一
    • Total Pages
      126
    • Publisher
      金原出版
    • Related Report
      2012 Final Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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