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Genome engineering and gene expression analysis in a model plant Arabidopsis thaliana

Research Project

Project/Area Number 22310129
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied genomics
Research InstitutionOkayama University

Principal Investigator

MURATA Minoru  岡山大学, 資源植物科学研究所, 資源植物科学研究所 (20166292)

Co-Investigator(Kenkyū-buntansha) NAGAKI Kiyotaka  岡山大学, 資源植物科学研究所, 准教授 (70305481)
Co-Investigator(Renkei-kenkyūsha) KASHIHARA Kazunari  岡山大学, 資源植物科学研究所, 技術職員 (60379807)
Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥17,940,000 (Direct Cost: ¥13,800,000、Indirect Cost: ¥4,140,000)
Fiscal Year 2012: ¥6,240,000 (Direct Cost: ¥4,800,000、Indirect Cost: ¥1,440,000)
Fiscal Year 2011: ¥6,890,000 (Direct Cost: ¥5,300,000、Indirect Cost: ¥1,590,000)
Fiscal Year 2010: ¥4,810,000 (Direct Cost: ¥3,700,000、Indirect Cost: ¥1,110,000)
Keywordsゲノム再編成 / シロイヌナズナ / 染色体 / Cre/LoxP / 相互転座 / 遺伝子発現 / ゲノム再構成 / Cre-LoxP / Ac-Ds / 組換え / ゲノム / 再構成 / Ac / Ds / 転座
Research Abstract

In order to reconstruct the nuclear genome of Arabidopsis thaliana, we introduced the LoxP sequence, which originated from bacteriophase P1, into the chromosomes, and have created 30 lines carrying one or two copies of LoxP per chromosome. These LoxP sites were combined in the genome by crossing, and the sequence-specific recombination was induced with the Cre-recombinase. PCR and FISH analyses revealed that reciprocal translocations are possibly induced by recombination between two LoxP sites located on different chromosomes. It was also suggested that alteration of chromatin structure associated with the reciprocal translocation, induces phenotypic changes.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (14 results)

All 2013 2012 2011 2010

All Journal Article (2 results) (of which Peer Reviewed: 2 results) Presentation (9 results) Book (3 results)

  • [Journal Article] Stability of monocentric and dicentric ring minichromosomes in Arabidopsis.2011

    • Author(s)
      Yokota, E., Shibata, F., Nagaki, K., Murata, M.
    • Journal Title

      Chromosome Research

      Volume: 19 Pages: 999-1012

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Minichromosome stability induced by partial genome duplication in Arabidopsis thaliana.2010

    • Author(s)
      Yokota, E., Nagaki, K., Murata, M.
    • Journal Title

      Chromosoma

      Volume: 119 Pages: 361-369

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Presentation] シロイヌナズナにおける染色体再編成の誘発とゲノム安定性2012

    • Author(s)
      村田稔・柴田洋・藤本聡・長岐清孝
    • Organizer
      日本遺伝学会第84回大会
    • Place of Presentation
      福岡市
    • Related Report
      2012 Annual Research Report 2012 Final Research Report
  • [Presentation] Cre/LoxP組換えによるシロイヌナズナ染色体の大規模再構成2011

    • Author(s)
      村田稔, 他4名
    • Organizer
      日本遺伝学会第84回大会
    • Place of Presentation
      京都大学(京都府)
    • Year and Date
      2011-09-22
    • Related Report
      2011 Annual Research Report
  • [Presentation] Arabidopsisring mini- chromosomes: A candidate for artificial chromosome vector. Japan-Germany Joint Seminar2011

    • Author(s)
      Murata, M
    • Organizer
      Frontiers of Plant Chromosome Research: Centromeres and Artificial Chromosomes
    • Place of Presentation
      Gatersleben, Germany
    • Related Report
      2012 Final Research Report
  • [Presentation] シロイヌナズナ環状ミニ染色体の構造と安定性2011

    • Author(s)
      横田悦子・柴田洋・長岐清孝・村田稔
    • Organizer
      染色体学会第62 会年会
    • Place of Presentation
      平塚市
    • Related Report
      2012 Final Research Report
  • [Presentation] Cre/LoxP組換えによるシロイヌナズナ染色体の大規模再編成2011

    • Author(s)
      村田稔・柴田洋・弘中明子・柏原壱成・長岐清孝
    • Organizer
      日本遺伝学会第83回大会
    • Place of Presentation
      京都市
    • Related Report
      2012 Final Research Report
  • [Presentation] Influence of partial genome duplication on gene expression : a case study in Arabidopsis2010

    • Author(s)
      Minoru Murata
    • Organizer
      10th Gatersleben Research Conference
    • Place of Presentation
      植物遺伝学作物研究所(ドイツ、ガーテルスレーベン)
    • Year and Date
      2010-11-23
    • Related Report
      2010 Annual Research Report
  • [Presentation] Influence of partial genome duplication on gene expression: a study case in Arabidopsis2010

    • Author(s)
      Murata, M
    • Organizer
      Gatersleben Research Conference X
    • Place of Presentation
      Gatersleben, Germany
    • Related Report
      2012 Final Research Report
  • [Presentation] シロイヌナズナにおいて新規に見出された染色体構造変異とその伝達2010

    • Author(s)
      横田悦子・長岐清孝・村田稔
    • Organizer
      染色体学会第61 会年会
    • Place of Presentation
      船橋市
    • Related Report
      2012 Final Research Report
  • [Presentation] シロイヌナズナに誘発された部分的ゲノム重複と遺伝子発現2010

    • Author(s)
      村田稔・横田悦子・長岐清孝
    • Organizer
      、日本遺伝学会第82回大会
    • Place of Presentation
      札幌市
    • Related Report
      2012 Final Research Report
  • [Book] Plant centromere biology2013

    • Author(s)
      Murata, M.
    • Publisher
      Wiley-Blackwell
    • Related Report
      2012 Final Research Report
  • [Book] Plant Centromere Biology2013

    • Author(s)
      Murata, M.
    • Total Pages
      208
    • Publisher
      Wiley-Blackwell
    • Related Report
      2012 Annual Research Report
  • [Book] Plant Centromere Biology(J.Jiang and J.Birchler, eds.)2012

    • Author(s)
      Murata, M.
    • Publisher
      Wiley-Blackwell Publishing(In press)
    • Related Report
      2011 Annual Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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