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Metabolism of inositol stereoisomers in a thermophile,Geobacillus kaustophilusHTA426

Research Project

Project/Area Number 22310130
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied genomics
Research InstitutionKobe University

Principal Investigator

YOSHIDA Ken-ichi  神戸大学, 大学院・農学研究科, 教授 (20230732)

Co-Investigator(Renkei-kenkyūsha) TAKAMI Hideto  海洋研究開発機構, 海洋極限環境生物圏領域, 上席研究員 (70359165)
Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥18,850,000 (Direct Cost: ¥14,500,000、Indirect Cost: ¥4,350,000)
Fiscal Year 2012: ¥5,070,000 (Direct Cost: ¥3,900,000、Indirect Cost: ¥1,170,000)
Fiscal Year 2011: ¥5,980,000 (Direct Cost: ¥4,600,000、Indirect Cost: ¥1,380,000)
Fiscal Year 2010: ¥7,800,000 (Direct Cost: ¥6,000,000、Indirect Cost: ¥1,800,000)
Keywords遺伝子資源 / ゲノム機能 / Geobacillus kaustophilus / inositol / Bacillus subtilis
Research Abstract

Geobacillus kaustophilusHTA426, a thermophilic Bacillus-related species, utilizes someinositol stereoisomers, including myo-, D-chiro-, and scyllo-inositols, as sole carbon sources. Within its genome are three paralogous genes that possibly encode inositol dehydrogenase. These genes, gk1897, gk1898, and gk1899, are located in tandem within a large gene cluster containing analmost complete set of iolgenes homologous to genes involved in inositol catabolism in B. subtilis. Each of the three plausible inositol dehydrogenases was purified as a His6-tag fusion. The enzymes exhibited thermophilic activity, each with its own characteristic specificity for the inositol stereoisomers and cofactors. Northern blot and primer extension analyses revealed that the three enzymes were encoded by the same 5-kb polycistronic transcript and were induced simultaneously in the presence of myo-inositol. HTA426 was subjected to EMS mutagenesis to isolate amutant strain, PS8, which was not able to utilize myo … More -inositol. In PS8, inositol dehydrogenase activity was abolished along with the 5-kb transcript, suggesting that any of the three enzymes is required for myo-inositol-dependent growth. Analysis of metabolites in HTA426 cells grown in the presence of myo-inositol revealed that substantial amounts of D-chiro-inositol and scyllo-inositol appeared intracellularly during the stationary phase, while only myo-inositol was present in PS8 cells, suggesting that interconversion of inositol stereoisomers may involve these three enzymes.We have successfully established transformation of G. kaustophilusto inactivate each of the three inositol dehydrogenase genes. The gk1897gene was essential for the growth depending on scyllo-inositol as the sole carbon source. Intriguingly, the mutant lacking gk1897was found to accumulate high level of intracellular scyllo-inositol to exhibited significant increase in CFU at lower temperatures. On the other hand, gk1899was essential for the growth on both myo- and D-chiro-inositols. Suppressor mutants of PS8 were isolated to exhibit better growth on myo-inositol, which regained expression of the transcript encodingthe three inositol dehydrogenases. Shotgun sequencing the 10 individual mutants revealed that 9 were found to carry the common mutation either in ribosome-binding site or translation start codon of a putative gene orthologous to B. subtilis crh. The results suggested that the reason for lost ioltranscription in PS8 might have something to do with excessive repression involving Crh. Less

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (23 results)

All 2012 2011 2010

All Journal Article (11 results) (of which Peer Reviewed: 11 results) Presentation (10 results) Book (2 results)

  • [Journal Article] Counterselection system for Geobacillus kaustophilusHTA426 through disruption of pyrFand pyrR2012

    • Author(s)
      Hirokazu Suzuki, Ayano Murakami, Ken-ichi Yoshida
    • Journal Title

      Appl. Environ. Microbiol

      Volume: 78巻 Pages: 7376-7383

    • URL

      http://aem.asm.org/content/78/20/7376.long

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Genetic transformation of Geobacillus kaustophilus HTA426 by conjugative transfer of host-mimicking plasmids2012

    • Author(s)
      Hirokazu Suzuki, Ken-ichi Yoshida
    • Journal Title

      J. Microbiol. Biotechnol.

      Volume: 22巻 Pages: 1279-1287

    • URL

      http://www.jmb.or.kr/journal/viewJournal.html?year=2012&vol=22&num=9&page=1279

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Genome mining and motif modifications of glycoside hydrolase family 1 members encoded by Geobacillus kaustophilus HTA426 provide thermostable 6-phospho-β-glycosidase and β-fucosidase2012

    • Author(s)
      Hirokazu Suzuki, Fumiyoshi Okazaki, Akihiko Kondo, Ken-ichi Yoshida
    • Journal Title

      Appl. Microbiol. Biotechnol.

      Volume: 97巻 Issue: 7 Pages: 2929-2938

    • DOI

      10.1007/s00253-012-4168-z

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Three inositol dehydrogenases involved in utilization and interconversion of inositol stereoisomers in a thermophile2012

    • Author(s)
      Ken-ichi Yoshida, Azusa Sanbongi, Ayano Murakami, Hirokazu Suzuki, Shinji Takenaka , Hideto Takami
    • Journal Title

      Geobacillus kaustophilus HTA426, Microbiology

      Volume: 158巻 Issue: 8 Pages: 1942-1952

    • DOI

      10.1099/mic.0.059980-0

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Genetic transformation of Geobacillus kaustophilus HTA426 by conjugative transfer of host-mimicking plasmids.2012

    • Author(s)
      Hirokazu Suzuki
    • Journal Title

      J Microbiol Biotechnol

      Volume: 22 Pages: 1279-1287

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Counterselection system for Geobacillus kaustophilus HTA426 through disruption of pyrF and pyrR.2012

    • Author(s)
      Hirokazu Suzuki
    • Journal Title

      Appl Environ Microbiol

      Volume: 78 Pages: 7376-7383

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A cell factory of Bacillus subtilis engineered for the simple bioconversion of myo-inositol to scyllo-inositol, a potential therapeutic agent for Alzheimer's disease2011

    • Author(s)
      Masaru Yamaoka, Shin Osawa, Tetsuro Morinaga, Shinji Takenaka, Ken-ichi Yoshida
    • Journal Title

      Microbial Cell Factories

      Volume: 10巻 Issue: 1 Pages: 69-74

    • DOI

      10.1186/1475-2859-10-69

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Differential substrate specificity of two inositol transporters of Bacillus subtilis2010

    • Author(s)
      Tetsuro Morinaga, Takatsugu Matsuse, Hitoshi Ashida, Ken-ichi Yoshida
    • Journal Title

      Biosci. Biotechnol. Biochem.

      Volume: 74巻 Pages: 1312-1314

    • NAID

      10027556759

    • URL

      https://www.jstage.jst.go.jp/article/bbb/74/6/74_100125/_article

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Identification of two scyllo-inositol dehydrogenases in Bacillus subtilis2010

    • Author(s)
      Tetsuro Morinaga, Hitoshi Ashida, Ken-ichi Yoshida
    • Journal Title

      Microbiology

      Volume: 156巻 Issue: 5 Pages: 1538-1546

    • DOI

      10.1099/mic.0.037499-0

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Identification of two scyllo-inositol dehydrogenases in Bacillus subtilis.2010

    • Author(s)
      Morinaga, T., Ashida, H., Yoshida, K.
    • Journal Title

      Microbiology

      Volume: 156 Pages: 1538-1546

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Differential substrate specificity of two inositol transporters of Bacillus subtilis.2010

    • Author(s)
      Morinaga, T., Matsuse, T., Asbida, H., Yoshida, K.
    • Journal Title

      Biosci.Biotechnol.Biochem.

      Volume: 74 Pages: 1312-1314

    • NAID

      10027556759

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] バクテリア細胞内でのイノシトール立体異性体相互変換の可能性2012

    • Author(s)
      吉田 健一, 村上絢野, 竹中慎治
    • Organizer
      日本農芸化学会 2012 年度大会
    • Place of Presentation
      京都女子大学
    • Year and Date
      2012-03-23
    • Related Report
      2012 Final Research Report
  • [Presentation] バクテリア細胞内でのイノシトール立体異性体相互変換の可能性2012

    • Author(s)
      吉田健一、村上絢野、竹中慎治
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都女子大学
    • Year and Date
      2012-03-23
    • Related Report
      2011 Annual Research Report
  • [Presentation] Geobacillus kaustophilus HTA426のiol変異株とそのサプレッサーの全ゲノム解析2012

    • Author(s)
      角美有紀, 志波優, 吉川博文, 吉田健一
    • Organizer
      平成 24 年度グラム陽性菌のゲノム生物学研究会
    • Place of Presentation
      焼津グランドホテル
    • Related Report
      2012 Final Research Report
  • [Presentation] Geobacillus kaustophilus HTA426 が有する 3 種イノシトール脱水素酵素の生理的意義2012

    • Author(s)
      村上絢野, 吉田健一
    • Organizer
      平成 24 年度グラム陽性菌のゲノム生物学研究会
    • Place of Presentation
      焼津グランドホテル
    • Related Report
      2012 Final Research Report
  • [Presentation] Geobacillus kaustophilus HTA426が有する3種イノシトール脱水素酵素の生理的意義2012

    • Author(s)
      吉田健一
    • Organizer
      平成24年度グラム陽性菌のゲノム生物学研究会
    • Place of Presentation
      焼津
    • Related Report
      2012 Annual Research Report
  • [Presentation] Geobacillus kaustophilus HTA426のiol変異株とそのサプレッサーの全ゲノム解析2012

    • Author(s)
      吉田健一
    • Organizer
      平成24年度グラム陽性菌のゲノム生物学研究会
    • Place of Presentation
      焼津
    • Related Report
      2012 Annual Research Report
  • [Presentation] Three functional inositol dehydrogenases of Geobacillus kaustophilus HTA426 encoded by a single operon2011

    • Author(s)
      Ken-ichi Yoshida
    • Organizer
      6th Conference on Functional Genomics of Gram-positive Microorganisms
    • Place of Presentation
      Montecatini Terme, Italy.
    • Related Report
      2012 Final Research Report
  • [Presentation] Three functional inositol dehydrogenases of Geobacillus kaustophilus HTA426 encoded by a single operon2011

    • Author(s)
      Ken-ichi Yoshida
    • Organizer
      6th Conference on Functional Genomics of Gram-positive Microorganisms
    • Place of Presentation
      Montecatini Terme, Italy
    • Related Report
      2011 Annual Research Report
  • [Presentation] Geobacillus kaustophilus HTA426 の 3種のイノシトール脱水素酵素オルソログの発現と機能の解析2010

    • Author(s)
      三本木あずさ, 森永哲郎, 鈴木宏和, 芦田均, 志波優, 吉川博文, 吉田 健一
    • Organizer
      第32回日本分子生物学会年会 第83回日本生化学学会 合同大会
    • Place of Presentation
      神戸国際会議場
    • Year and Date
      2010-12-10
    • Related Report
      2012 Final Research Report
  • [Presentation] Geobacillus kaustophilus HTA426の3種のイノシトール脱水素酵素オルソログの発現と機能の解析2010

    • Author(s)
      三本木あずさ, 森永哲郎, 鈴木宏和, 芦田均, 志波優, 吉川博文, 吉田健一
    • Organizer
      第32回日本分子生物学会年会 第83回日本生化学学会合同大会
    • Place of Presentation
      神戸国際会議場(兵庫県)
    • Year and Date
      2010-12-10
    • Related Report
      2010 Annual Research Report
  • [Book] 微生物機能学2012

    • Author(s)
      吉田健一ほか 12 名(森田英利 編)
    • Publisher
      三共出版
    • Related Report
      2012 Final Research Report
  • [Book] 微生物機能学2012

    • Author(s)
      吉田健一, ほか12名(森田英利編)
    • Total Pages
      177
    • Publisher
      三共出版
    • Related Report
      2011 Annual Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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