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Design of synthetic agents that disrupt protein-protein interactions

Research Project

Project/Area Number 22350074
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Chemistry related to living body
Research InstitutionOsaka University

Principal Investigator

OHKANDA Junko  大阪大学, 産業科学研究所, 准教授 (50233052)

Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥18,850,000 (Direct Cost: ¥14,500,000、Indirect Cost: ¥4,350,000)
Fiscal Year 2012: ¥1,820,000 (Direct Cost: ¥1,400,000、Indirect Cost: ¥420,000)
Fiscal Year 2011: ¥2,730,000 (Direct Cost: ¥2,100,000、Indirect Cost: ¥630,000)
Fiscal Year 2010: ¥14,300,000 (Direct Cost: ¥11,000,000、Indirect Cost: ¥3,300,000)
Keywordsたんぱく質間相互作用 / 阻害剤 / 分子設計 / 金属錯体 / K-Ras / プレニル転移酵素 / 14-3-3 たんぱく質 / 14-3-3たんぱく質 / たんぱく質-たんぱく質間相互作用 / 中分子 / K-Ras4B / グアニジン含有阻害剤 / 構造活性相関 / 酵素阻害剤 / モジュールアセンブリ / ビピリジン金属錯体 / たんぱく質表面認識
Research Abstract

Low-molecular-weight compounds that disrupt protein-protein interactions (PPIs) have tremendous potential applications as clinical agents and as chemical probes forinvestigating intracellular PPI networks. However, disrupting PPIs is extremely difficult due to the large, flat interfaces of many proteins, which often lack structurally defined cavities to which drug-like molecules could bind in a thermodynamically favorable manner. In this study, we examined the module-assembly strategy for designing PPI inhibitors, in which small module compounds are designed and assembled either by covalent linking with a linker, metal coordination, or chemical ligation on the targeted protein surface, to create a multivalent agent. For example, covalent linking of two modules designed for an active site and a PPI interface led to a potent bivalent agent that disrupt transient protein-protein interactions between protein prenyltransferases and K-Ras protein. These agents demonstrated significant inhibition activity against both farnesylation and geranylgeranylation of K-Ras C-terminal oligopeptide. Furthermore, structural modification by introducing guanidyl groups and peptidomimetics improved the cell permeation of agents, resulting in submicromolar inhibitors for FTase in cells.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (54 results)

All 2013 2012 2011 2010 Other

All Journal Article (8 results) (of which Peer Reviewed: 8 results) Presentation (44 results) (of which Invited: 4 results) Remarks (2 results)

  • [Journal Article] Antimicrobial N-(2-chlorobenzyl)-substituted hydroxamate is an inhibitor of 1-deoxy-D-xylulose 5-phosphate synthase2013

    • Author(s)
      D. Hayashi, N. Kato, T. Kuzuyama, Y. Sato, J. Ohkanda
    • Journal Title

      Chemical Communications

      Volume: (in press) Issue: 49 Pages: 5535-5535

    • DOI

      10.1039/c3cc40758f

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Peptidomimetic modification improves cell permeation of bivalent farnesyltransferase inhibitors2013

    • Author(s)
      S. Machida, M. Tsubamoto, N. Kato, K.Harada, J. Ohkanda
    • Journal Title

      Bioorganic Medicinal Chemistry

      Volume: (in press) Issue: 14 Pages: 4004-4010

    • DOI

      10.1016/j.bmc.2012.09.061

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Chemical ligation of epoxide-containing fusicoccins and peptide fragments guided by 14-3-3 protein2013

    • Author(s)
      T. Maki, A. Kawamura, N. Kato, J.Ohkanda
    • Journal Title

      Molecular BioSystems

      Volume: 20 Issue: 5 Pages: 583-593

    • DOI

      10.1039/c2mb25388g

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] A semi-synthetic fusicoccane stabilizes a protein-protein interaction and enhances the expression of K+ channels at the cell surface2013

    • Author(s)
      C. Anders, Y. Higuchi, K. Koschinsky, M. Bartel, B. Schumacher, P. Thiel, H. Nitta, R. Preisigller, G. Schlichthrl, V. Renigunta, J. Ohkanda, J. Daut, N. Kato, C.Ottmann
    • Journal Title

      Chemistry & Biology

      Volume: 20 Issue: 4 Pages: 583-593

    • DOI

      10.1016/j.chembiol.2013.03.015

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Protein recognition of hetero-/homoleptic ruthenium (II) tris(bipyridine)s for -chymotrypsin and cytochrome c2012

    • Author(s)
      Y. Yamaguchi, N. Kato, H. Azuma, T.Nagasaki, J. Ohkanda
    • Journal Title

      Bioorganic Medicinal Chemistry Letters

      Volume: 22 Issue: 6 Pages: 2354-2358

    • DOI

      10.1016/j.bmcl.2011.12.087

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A novel fusicoccin derivative preferentially targets hypoxic tumor cells and inhibits tumor growth in xenografts2012

    • Author(s)
      K. Kawakami, M.Hattori, T. Inoue, Y. Maruyama, J. Ohkanda, N. Kato, M. Tongu, T. Yamada, M. Akimoto, K. Takenaga, T. Sassa, J.Suzumiya, Y.Honma
    • Journal Title

      Anticancer Agents in Medicinal Chemistry

      Volume: 12 Pages: 791-800

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Phosphopeptide-Dependent Labeling of 14-3-3ζ Proteins by Fusicoccin-Based Fluorescent Probes2012

    • Author(s)
      M.Takahashi, A.Kawamura, N.Kato, T.Nishi, I.Hamachi, J.Ohkanda
    • Journal Title

      Angew.Chem.Int.Ed.

      Volume: 51 Issue: 2 Pages: 509-512

    • DOI

      10.1002/anie.201106995

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Bivalent inhibitors for disrupting protein surface-substrate interactions and for dual inhibition of protein prenyltransferases2011

    • Author(s)
      S. Machida, N. Kato, K. Harada, J.Ohkanda
    • Journal Title

      Journal of the American Chemical Society

      Volume: 133 Issue: 4 Pages: 958-963

    • DOI

      10.1021/ja1086112

    • Related Report
      2012 Final Research Report 2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] K-Ras タンパク質間相互作用の制御を指向したグアニジル基含有アンカー型ファルネシル転移酵素阻害剤の細胞活性評価2013

    • Author(s)
      大神田淳子
    • Organizer
      日本化学会第93 春季年会
    • Place of Presentation
      立命館大学(滋賀県)
    • Year and Date
      2013-03-22
    • Related Report
      2012 Final Research Report
  • [Presentation] たんぱく質表面を標的とする有機分子の創製」2013

    • Author(s)
      大神田淳子
    • Organizer
      産研テクノサロン
    • Place of Presentation
      大阪府
    • Year and Date
      2013-02-01
    • Related Report
      2012 Final Research Report
  • [Presentation] Toward selective inactivation of K-Ras: Bivalent dual inhibitors for disrupting protein-protein interactions of protein prenyltransferases2013

    • Author(s)
      大神田淳子
    • Organizer
      16th SANKEN International Symposium 2013
    • Place of Presentation
      大阪大学(大阪府)
    • Year and Date
      2013-01-23
    • Related Report
      2012 Final Research Report
  • [Presentation] たんぱく質間相互作用(PPIs)に対する低分子創薬の可能性を追って~モジュールアセンブリによる中分子の創製とPPIs 制御および検出~2012

    • Author(s)
      大神田淳子
    • Organizer
      第13回CTCセミナー東京理科大学がん医療基盤科学技術研究センター
    • Place of Presentation
      東京理科大学(千葉県)
    • Year and Date
      2012-10-30
    • Related Report
      2012 Final Research Report
  • [Presentation] たんぱく質問相互作用 (PPIs) に対する低分子創薬の可能性を追って~モジュールアセンブリによる中分子の創製とPPIs 制御2012

    • Author(s)
      大神田淳子
    • Organizer
      第13回CTCセミナー
    • Place of Presentation
      東京理科大学薬学部 (千葉)(招待講演)
    • Year and Date
      2012-10-30
    • Related Report
      2011 Annual Research Report
  • [Presentation] Assembling small molecules for disrupting and detecting protein-protein interactions2012

    • Author(s)
      大神田淳子
    • Organizer
      2012年10月8日, Department of Pharmaceutical Sciences of College of Pharmacy
    • Place of Presentation
      University of South Florida (フロリダ、アメリカ)
    • Year and Date
      2012-10-08
    • Related Report
      2012 Final Research Report
  • [Presentation] Assembling small molecules for disrupting and detecting protein-protein interactions2012

    • Author(s)
      J. Ohkanda
    • Organizer
      Department of Pharmaceutical Sciences of College ofPharmacy, University of South Florida
    • Place of Presentation
      University of South Florida(Tampa, USA)(招待講演)
    • Year and Date
      2012-10-08
    • Related Report
      2011 Annual Research Report
  • [Presentation] Assembling small molecules for disrupting and detecting protein-protein interactions2012

    • Author(s)
      大神田淳子
    • Organizer
      Institute for Chemical Research
    • Place of Presentation
      Kyoto University
    • Year and Date
      2012-07-18
    • Related Report
      2012 Final Research Report
  • [Presentation] Assembling small molecules for disrupting and detecting protein-protein interactions2012

    • Author(s)
      J. Ohkanda
    • Organizer
      Institute for Chemical Research, Kyoto University
    • Place of Presentation
      京都大学化学研究所 (京都)(招待講演)
    • Year and Date
      2012-07-18
    • Related Report
      2011 Annual Research Report
  • [Presentation] Assembling small molecules for disrupting and detecting protein-protein interactions2012

    • Author(s)
      大神田淳子
    • Organizer
      Department Seminar, Department of Chemistry
    • Place of Presentation
      University of Minnesota, Minneapolis (ミネソタ、アメリカ)
    • Year and Date
      2012-06-07
    • Related Report
      2012 Final Research Report
  • [Presentation] Assembling small molecules for disrupting and detecting protein-protein interactions2012

    • Author(s)
      J. Ohkanda
    • Organizer
      Department of Chemistry, University of Minnesota
    • Place of Presentation
      University of Minnesota(Minneapolis, USA)(招待講演)
    • Year and Date
      2012-06-07
    • Related Report
      2011 Annual Research Report
  • [Presentation] Assembling small molecules for disrupting and detecting protein-protein interactions2012

    • Author(s)
      大神田淳子
    • Organizer
      Department Seminar,Departmentof Cellular and Molecular Pharmacology, University of California
    • Place of Presentation
      San Francisco (カルフォルニア、アメリカ)
    • Year and Date
      2012-06-05
    • Related Report
      2012 Final Research Report
  • [Presentation] Assembling small molecules for disrupting and detecting protein-protein interactions2012

    • Author(s)
      J. Ohkanda
    • Organizer
      Department of Cellular and Molecular Pharmacology,University of California, San Francisco
    • Place of Presentation
      UCSF (SanFrancisco, USA)(招待講演)
    • Year and Date
      2012-06-05
    • Related Report
      2011 Annual Research Report
  • [Presentation] タンパク質間相互作用の制御を目指したグアニジル基含有ファルネシル転移酵素阻害剤の設計と機能2012

    • Author(s)
      大神田淳子
    • Organizer
      日本化学会第92 春季年会
    • Place of Presentation
      慶応大学(神奈川)
    • Year and Date
      2012-03-27
    • Related Report
      2012 Final Research Report
  • [Presentation] タンパク質間相互作用の制御を目指したグアニジル基含有ファルネシル転移酵素阻害剤の設計と機能2012

    • Author(s)
      大神田淳子
    • Organizer
      第92回日本化学会年会
    • Place of Presentation
      慶応義塾大学 (神奈川)
    • Year and Date
      2012-03-25
    • Related Report
      2011 Annual Research Report
  • [Presentation] 細胞内たんぱく質問相互作用の制御を目指して:グアニジン含有アンカー型酵素阻害剤を創る2011

    • Author(s)
      大神田淳子
    • Organizer
      第14回生命化学研究会
    • Place of Presentation
      白浜 (和歌山)
    • Year and Date
      2011-12-02
    • Related Report
      2011 Annual Research Report
  • [Presentation] フシコクシン誘導体による14-3-3たんぱく質の細胞内蛍光標識化2011

    • Author(s)
      大神田淳子
    • Organizer
      第67回産業科学研究所学術講演会
    • Place of Presentation
      大阪大学(大阪)
    • Year and Date
      2011-11-22
    • Related Report
      2012 Final Research Report
  • [Presentation] Bipyridine metal complexes for protein surface recognition2011

    • Author(s)
      大神田淳子
    • Organizer
      14th Asian Chemical Congress
    • Place of Presentation
      バンコク国際会議場(バンコク、タイ) (招待講演)
    • Year and Date
      2011-09-06
    • Related Report
      2012 Final Research Report
  • [Presentation] Bipyridine metal complexes for protein surface recognition2011

    • Author(s)
      J. Ohkanda
    • Organizer
      14th Asian Chemical Congress
    • Place of Presentation
      Bangkok (Thailand)(招待講演)
    • Year and Date
      2011-09-06
    • Related Report
      2011 Annual Research Report
  • [Presentation] Bipyridine metal complexes for protein surface recognition2011

    • Author(s)
      J.Ohkanda
    • Organizer
      14th Asian Chemical Congress
    • Place of Presentation
      Bangkok, Thailand(Invited Lecture)
    • Year and Date
      2011-09-06
    • Related Report
      2010 Annual Research Report
  • [Presentation] たんぱく質‐たんぱく質間相互作用を制御する有機分子を創る-抗体医薬を補えるか?低分子創薬の可能性を追って2011

    • Author(s)
      大神田淳子
    • Organizer
      有機合成化学協会関西支部セミナー化学千一夜
    • Place of Presentation
      花王(株)有田研修所(和歌山)
    • Year and Date
      2011-07-30
    • Related Report
      2012 Final Research Report
  • [Presentation] たんぱく質-たんぱく質間相互作用を制御する有機分子を創る~抗体医薬を補えるか?低分子創薬の可能性を追って~2011

    • Author(s)
      大神田淳子
    • Organizer
      有機合成化学協会関西支部セミナー"化学千一夜"
    • Place of Presentation
      有田 (和歌山)(招待講演)
    • Year and Date
      2011-07-30
    • Related Report
      2011 Annual Research Report
  • [Presentation] たんぱく質-たんぱく質間相互作用を制御する有機分子を創る-抗体医薬を補えるか?低分子創薬の可能性を追って-2011

    • Author(s)
      大神田淳子
    • Organizer
      有機合成化学協会関西支部セミナー化学千一夜
    • Place of Presentation
      花王(株)有田研修所、和歌山(招待講演)
    • Year and Date
      2011-07-30
    • Related Report
      2010 Annual Research Report
  • [Presentation] たんぱく質-たんぱく質間相互作用を制御し検出するための有機分子の創製2011

    • Author(s)
      大神田淳子
    • Organizer
      理研ケミカルバイオロジー研究領域勉強会
    • Place of Presentation
      理研・和光研究所(埼玉)
    • Year and Date
      2011-04-27
    • Related Report
      2012 Final Research Report
  • [Presentation] Assembling small molecules for disrupting and detecting protein-protein interactions(PPIs)2011

    • Author(s)
      大神田淳子
    • Organizer
      第28回「ケミカルバイオロジー研究領域」勉強会
    • Place of Presentation
      理化学研究所 (埼玉)(招待講演)
    • Year and Date
      2011-04-27
    • Related Report
      2011 Annual Research Report
  • [Presentation] Assembling small molecules for disrupting and detecting protein-protein interactions2011

    • Author(s)
      大神田淳子
    • Organizer
      CBC Department Seminar
    • Place of Presentation
      Nanyang Technological University, (シンガポール)
    • Year and Date
      2011-03-09
    • Related Report
      2012 Final Research Report
  • [Presentation] Assembling small molecules for disrupting and detecting protein-protein interactions2011

    • Author(s)
      J.Ohkanda
    • Organizer
      Chemistry and Biochemistry (CBC) Department Seminar
    • Place of Presentation
      Nanyang Technological University, Singapore(Invited Lecture)
    • Year and Date
      2011-03-09
    • Related Report
      2010 Annual Research Report
  • [Presentation] 細胞内たんぱく質間相互作用の制御を目指して:グアニジン含有アンカー型酵素阻害剤を創る2011

    • Author(s)
      大神田淳子
    • Organizer
      第14回生命化学研究会
    • Place of Presentation
      白浜(和歌山)
    • Related Report
      2012 Final Research Report
  • [Presentation] Module assembly for disrupting protein-protein interactions and dual inhibition of prenyltransferases2010

    • Author(s)
      大神田淳子
    • Organizer
      Pacifichem2010
    • Place of Presentation
      ハワイコンベンションセンター(ハワイ、アメリカ)(招待講演)
    • Year and Date
      2010-12-16
    • Related Report
      2012 Final Research Report
  • [Presentation] Module assembly for disrupting protein-protein interactions and dual inhibition for prenyltransferases2010

    • Author(s)
      J.Ohkanda
    • Organizer
      Pacifichem2010
    • Place of Presentation
      Hawaii, USA(Invited presentation)
    • Year and Date
      2010-12-16
    • Related Report
      2010 Annual Research Report
  • [Presentation] Module assembly for disrupting protein-protein interactions2010

    • Author(s)
      大神田淳子
    • Organizer
      AIST Colloquium for Future-Pioneering
    • Place of Presentation
      奈良先端技術大学院大学(奈良、日本)(招待講演)
    • Year and Date
      2010-12-10
    • Related Report
      2012 Final Research Report
  • [Presentation] Module assembly for disrupting protein-protein interactions2010

    • Author(s)
      J.Ohkanda
    • Organizer
      NAIST Colloquium for Future-Pioneering 2010
    • Place of Presentation
      NAIST, Nara(Invited Lecture)
    • Year and Date
      2010-12-10
    • Related Report
      2010 Annual Research Report
  • [Presentation] たんぱく質間相互作用の制御・検出のための有機分子の創製2010

    • Author(s)
      大神田淳子
    • Organizer
      九州大学先導化学研究所講演会
    • Place of Presentation
      九州大学先導化学研究所 (福岡)
    • Year and Date
      2010-10-08
    • Related Report
      2012 Final Research Report
  • [Presentation] たんぱく質間相互作用の制御・検出のための有機分子の創製2010

    • Author(s)
      大神田淳子
    • Organizer
      九州大学先導化学研究所講演会
    • Place of Presentation
      九州大学先導化学研究所、福岡(招待講演)
    • Year and Date
      2010-10-08
    • Related Report
      2010 Annual Research Report
  • [Presentation] たんぱく質-たんぱく質間相互作用を制御する有機分子の設計2010

    • Author(s)
      大神田淳子
    • Organizer
      第43回若手ペプチド夏の勉強会
    • Place of Presentation
      淡路島 (兵庫)
    • Year and Date
      2010-08-03
    • Related Report
      2012 Final Research Report
  • [Presentation] たんぱく質-たんぱく質間相互作用を制御する有機分子の設計2010

    • Author(s)
      大神田淳子
    • Organizer
      第43回若手ペプチド夏の勉強会
    • Place of Presentation
      淡路島、兵庫(招待講演)
    • Year and Date
      2010-08-03
    • Related Report
      2010 Annual Research Report
  • [Presentation] Module assembly for disruption and detection of protein-protein interactions2010

    • Author(s)
      J.Ohkanda
    • Organizer
      Gordon Research Conference, Bioorganic Chemistry
    • Place of Presentation
      New Hampshire, USA(Invited presentation)
    • Year and Date
      2010-06-14
    • Related Report
      2010 Annual Research Report
  • [Presentation] Module assembly for disruption and detection of protein-protein interactions2010

    • Author(s)
      大神田淳子
    • Organizer
      Gordon Research Conference Bioorganic Chemistry, Poster Talk
    • Place of Presentation
      Proctor Academy, Andover (ニューハンプシャー、アメリカ) (招待講演)
    • Year and Date
      2010-06-13
    • Related Report
      2012 Final Research Report
  • [Presentation] K-Ras タンパク質間相互作用の制御を指向したグアニジル基含有アンカー型ファルネシル転移酵素阻害剤の細胞活性評価

    • Author(s)
      大神田淳子
    • Organizer
      日本化学会第93春季年会
    • Place of Presentation
      立命館大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] たんぱく質表面を標的とする有機分子の創製

    • Author(s)
      大神田淳子
    • Organizer
      産研テクノサロン
    • Place of Presentation
      大阪大学
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Toward selective inactivation of K-Ras: Bivalent dual inhibitors for disrupting protein-protein interactions of protein prenyltransferases

    • Author(s)
      大神田淳子
    • Organizer
      16th SANKEN International Symposium 2013
    • Place of Presentation
      大阪大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] Natural product-based chemical probes for detecting 14-3-3-phospholigand interactions

    • Author(s)
      大神田淳子
    • Organizer
      G3 Meeting International, Japanese Nano-Macro Materials, Devices and System Research Alliance
    • Place of Presentation
      東京工業大学
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Natural product-based chemical probes for detecting 14-3-3-phospholigand interactions

    • Author(s)
      大神田淳子
    • Organizer
      The Sixth Peptide Engineering Meeting PEM6
    • Place of Presentation
      Emory University, USA
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Fusicoccin-based fluorescent probes for detecting 14-3-3 interactions with phosphorylated ligands

    • Author(s)
      大神田淳子
    • Organizer
      2012 Asian Chemical Biology Conference ACBC2012
    • Place of Presentation
      Southern Beach Hotel & Resort Okinawa
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Remarks]

    • URL

      http://www.scl.kyoto-u.ac.jp/~uesugi/index.php

    • Related Report
      2012 Final Research Report
  • [Remarks]

    • URL

      http://www.sanken.osaka-u.ac.jp/~johkanda/index.htm

    • Related Report
      2011 Annual Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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