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Structural study on substrate recognition mechanism of the S2P-type I-CLiP

Research Project

Project/Area Number 22370039
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionYokohama City University (2011-2012)
Osaka University (2010)

Principal Investigator

NOGI Terukazu  横浜市立大学, 大学院・生命ナノシステム科学研究科, 准教授 (40379102)

Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥18,980,000 (Direct Cost: ¥14,600,000、Indirect Cost: ¥4,380,000)
Fiscal Year 2012: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2011: ¥5,200,000 (Direct Cost: ¥4,000,000、Indirect Cost: ¥1,200,000)
Fiscal Year 2010: ¥8,190,000 (Direct Cost: ¥6,300,000、Indirect Cost: ¥1,890,000)
Keywords立体構造解析 / 膜タンパク質 / プロテアーゼ / 結晶化 / シグナル伝達 / 膜内配列切断 / X線結晶構造解析 / ストレス応答 / 構造生物学 / 膜蛋白質
Research Abstract

In this project, we carried out structural and biochemical studies on bacterial intramembrane proteases so as to elucidate the molecular mechanism of substrate recognition in the regulated intramembrane proteolysis (RIP). We successfully determined the crystal structure of the periplasmic domain of the intramembrane protease. In addition, we found that the domain is involved in the substrate discrimination in the course of RIP.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (18 results)

All 2012 2011 2010 Other

All Journal Article (5 results) (of which Peer Reviewed: 5 results) Presentation (9 results) (of which Invited: 1 results) Remarks (4 results)

  • [Journal Article] Higher-order architecture of cell adhesion mediated by polymorphic synaptic adhesion molecules neurexin and neuroligin2012

    • Author(s)
      Tanaka, H., Miyazaki, N., Matoba, K., Nogi, T., Iwasaki, K., and Takagi, J
    • Journal Title

      Cell Reports

      Volume: 2(1) Issue: 1 Pages: 101-110

    • DOI

      10.1016/j.celrep.2012.06.009

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of α5β1 integrin ectodomain : Atomic details of the fibronectin receptor2012

    • Author(s)
      Nagae, M., et al.
    • Journal Title

      The Journal of Cell Biology

      Volume: 197 Issue: 1 Pages: 131-140

    • DOI

      10.1083/jcb.201111077

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural Basis for Variant-Specific Neuroligin-Binding by α-Neurexin2011

    • Author(s)
      Tanaka, H., et al.
    • Journal Title

      PLoS One

      Volume: 6 Issue: 4 Pages: e19411-e19411

    • DOI

      10.1371/journal.pone.0019411

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Crystallization and preliminary crystallographic anal-ysis of human LR11 Vps10p domain2011

    • Author(s)
      Nakata Z, Nagae M, Yasui N, Bujo H, Nogi T, Takagi J
    • Journal Title

      Acta Crystallogr Sect F Struct Biol Cryst Commun

      Volume: 67 Issue: 1 Pages: 129-132

    • DOI

      10.1107/s1744309110048153

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Structural basis for semaphorin signalling through the plexin receptor2010

    • Author(s)
      Nogi T, Yasui N, Mihara E, Matsunaga Y, Noda M, Yamashita N, Toyofuku T, Uchiyama S, Goshima Y, Kumanogoh A, Takagi J.
    • Journal Title

      Nature

      Volume: 467(7319) Issue: 7319 Pages: 1123-7

    • DOI

      10.1038/nature09473

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Presentation] 大腸菌RIPプロテアーゼRsePのタンデムPDZドメインによる新たな機能制御メカニズム2012

    • Author(s)
      檜作洋平、禾晃和、田畑早苗、川上-田村恵子、小田隆、佐藤衛、高木淳一、秋山芳展
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡国際会議場(福岡市)
    • Year and Date
      2012-12-16
    • Related Report
      2012 Final Research Report
  • [Presentation] 膜内配列切断(RIP)におけるPDZドメインを介した"基質認識"2012

    • Author(s)
      禾晃和
    • Organizer
      大阪大学蛋白質研究所セミナー・包括脳ネットワーク研究会、第3回神経科学と構造生物学の融合研究会(招待講演)
    • Place of Presentation
      大阪大学蛋白質研究所(吹田市)
    • Year and Date
      2012-10-04
    • Related Report
      2012 Final Research Report
  • [Presentation] 大腸菌表層ストレス応答に関与する膜内切断プロテアーゼRsePのPDZドメインによる新たな機能制御メカニズム2012

    • Author(s)
      檜作洋平、禾晃和、田畑早苗、川上-田村恵子、小田隆、佐藤衛、高木淳一、秋山芳展
    • Organizer
      第6回細菌学若手コロッセウム
    • Place of Presentation
      大学セミナーハウス(八王子市)
    • Year and Date
      2012-08-10
    • Related Report
      2012 Final Research Report
  • [Presentation] 膜内切断プロテアーゼRsePの基質取り込み制御におけるPDZタンデムの役割2012

    • Author(s)
      禾晃和、檜作洋平、田畑早苗、川上-田村恵子、小田隆、佐藤衛、高木淳一、秋山芳展
    • Organizer
      第12回日本蛋白質科学会年会
    • Place of Presentation
      名古屋国際会議場(名古屋市)
    • Year and Date
      2012-06-21
    • Related Report
      2012 Final Research Report
  • [Presentation] 膜内切断プロテアーゼRsePの基質取り込み制御におけるPDZタンデムの役割2012

    • Author(s)
      禾晃和、檜作洋平、田畑早苗、川上-田村恵子、小田隆、佐藤衛、高木淳一、秋山芳展
    • Organizer
      第12回日本蛋白質科学会年会
    • Place of Presentation
      名古屋国際会議場(名古屋市)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 膜内配列切断(RIP)におけるPDZドメインを介した“基質認識”2012

    • Author(s)
      禾晃和
    • Organizer
      大阪大学蛋白質研究所セミナー・包括脳ネットワーク研究会 第3回神経科学と構造生物学の融合研究会
    • Place of Presentation
      大阪大学蛋白質研究所(吹田市)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 大腸菌RIPプロテアーゼRsePのタンデムPDZドメインによる新たな機能制御メカニズム2012

    • Author(s)
      檜作洋平、禾晃和、田畑早苗、川上-田村恵子、小田隆、佐藤衛、高木淳一、秋山芳展
    • Organizer
      第85回日本生化学会大会
    • Place of Presentation
      福岡国際会議場(福岡市)
    • Related Report
      2012 Annual Research Report
  • [Presentation] 、Structural analysis of PDZ modules of bacterial site-2 protease2010

    • Author(s)
      禾晃和、高 木 淳 一
    • Organizer
      26th European Crystallographic Meeting
    • Place of Presentation
      、Darmstadtium Conference Center (ドイツ、ダルムシュタット市)
    • Year and Date
      2010-09-01
    • Related Report
      2012 Final Research Report
  • [Presentation] Structural analysis of PDZ modules of bacterial site-2 protease2010

    • Author(s)
      禾晃和、高木淳一
    • Organizer
      26th European Crystallographic Meeting
    • Place of Presentation
      Darmstadtium Conference Center(Germany)
    • Year and Date
      2010-09-01
    • Related Report
      2010 Annual Research Report
  • [Remarks] Terukazu NOGI / Yokohama City University

    • URL

      http://www-mls.tsurumi.yokohama-cu.ac.jp/xtal-mls/members/nogi/index.html

    • Related Report
      2012 Final Research Report
  • [Remarks] Terukazu NOGI / Yokohama City University

    • URL

      http://www-mls.tsurumi.yokohama-cu.ac.jp/xtal-mls/members/nogi/index.html

    • Related Report
      2012 Annual Research Report
  • [Remarks]

    • URL

      http://www.tsurumi.yokohama-cu.ac.jp/xtal/index.html

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www.protein.osaka-u.ac.jp/rcsfp/synthesis/researchl.html

    • Related Report
      2010 Annual Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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