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Molecular mechanism of maintenance of a rod shaped cell in Escherichia coli

Research Project

Project/Area Number 22370067
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Molecular biology
Research InstitutionNational Institute of Genetics

Principal Investigator

NIKI Hironori  国立遺伝学研究所, 系統生物研究センター, 教授 (70208122)

Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥18,200,000 (Direct Cost: ¥14,000,000、Indirect Cost: ¥4,200,000)
Fiscal Year 2012: ¥6,630,000 (Direct Cost: ¥5,100,000、Indirect Cost: ¥1,530,000)
Fiscal Year 2011: ¥7,020,000 (Direct Cost: ¥5,400,000、Indirect Cost: ¥1,620,000)
Fiscal Year 2010: ¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Keywords桿菌 / 球菌 / 細胞壁 / ペプチドグリカン / 細胞骨格 / アクチン / 形態形成 / 抗生物質 / 細胞幅
Research Abstract

RodZ interacts with MreB and both factors are required to maintain the rod shape of Escherichia coli. The assembly of MreB into filaments regulates the subcellular arrangement of a group of enzymes that synthesizes the peptidoglycan (PG) layer. However, it is still unknown how polymerization of MreB determines the rod shape of bacterial cells. Regulatory factor(s) are likely to be involved in controlling the function and dynamics of MreB. We isolated suppressor mutations to partially recover the rod shape in rodZ deletion mutants and found that some of the suppressor mutations occurred in mreB. All of the mreB mutations were in or in the vicinity of domain IA of MreB. Those mreB mutations changed the property of MreB filaments in vivo. In addition, suppressor mutations were found in the periplasmic regions in PBP2 and RodA, encoded by mrdA and mrdB genes. Similar to MreB and RodZ, PBP2 and RodA are pivotal to the cell wall elongation process. Thus, we found that mutations in domain IA of MreB and in the periplasmic domain of PBP2 and RodA can restore growth and rod shape to ΔrodZ cells, possibly by changing the requirements of MreB in the process.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (25 results)

All 2013 2012 2011 2010 Other

All Journal Article (8 results) (of which Peer Reviewed: 8 results) Presentation (12 results) Book (2 results) Remarks (3 results)

  • [Journal Article] Mutations in cell elongation genes mreB, mrdA and mrdB suppress the shape defect of RodZ-deficient cells2013

    • Author(s)
      Shiomi, D., Toyoda, A., Aizu, T., Ejima,F., Fujiyama, A., Shini, T., Kohara, Y., &Niki, H.
    • Journal Title

      Mol Microbiol

      Volume: 87 Pages: 1029-1044

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Mutations in cell elongation genes mreB, mrdA and mrdB suppress the shape defect of RodZ-deficient cells2013

    • Author(s)
      Shiomi, D
    • Journal Title

      Molecular Microbiology

      Volume: 87 Issue: 5 Pages: 1029-1044

    • DOI

      10.1111/mmi.12148

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 球菌から菌糸まで、桿菌 の細胞の形態を決める因子たち。2012

    • Author(s)
      仁木 宏典
    • Journal Title

      化学療法の領域

      Volume: 22巻5号 Pages: 840-847

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Unbalanced charge distribution as a determinant for dependence of a subset of Escherichia coli membrane proteins on the membrane insertase YidC2011

    • Author(s)
      Gray, A.N., Henderson-Frost, J.M., Boyd, D., Shirafi, S., Niki, H., & Goldberg, M.B
    • Journal Title

      mBio 2

      Volume: e00238-11

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] A mutation of ispA that is involved in isoprenoid biogenesis can improve slow growth of Escherichia coli at low temperature2011

    • Author(s)
      Shiomi, D.,& Niki, H
    • Journal Title

      Microbiol Immunol

      Volume: 55 Pages: 885-888

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Visualization of bacteriophage P1 infection by cryo-electron tomography of tiny Escherichia coli2011

    • Author(s)
      Liu, J., Chen, C.Y., Shiomi, D., Niki, H., & Margolin, W
    • Journal Title

      Virology

      Volume: 417 Pages: 304-344

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Identification of Escherichia coli ZapC (YcbW) as a component of the division apparatus that binds & bundles FtsZ polymers2011

    • Author(s)
      Hale, C.A., Shiomi, D., Liu, B., Bernhardt, T.G., argolin, W., Niki, H., & de Boer, PA
    • Journal Title

      J Bacteriol

      Volume: 193 Pages: 1393-1404

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Visualization of bacteriophage P1 infection by cryo-electron tomography of tiny Escherichia coli2011

    • Author(s)
      Liu, J., Chen, CY., Shiomi, D., Niki, H., Margolin, W.
    • Journal Title

      Virology

      Volume: 417 Pages: 304-311

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Presentation] 大腸菌形態制御因子RodZ の分裂面への局在とその意義2013

    • Author(s)
      塩見 大輔, 仁木 宏典
    • Organizer
      第7回ゲノム微生物学会年会
    • Place of Presentation
      滋賀県長浜市
    • Related Report
      2012 Final Research Report
  • [Presentation] 大腸菌形態制御因子 RodZ の分裂面への局在とその意義2013

    • Author(s)
      塩見 大輔
    • Organizer
      日本ゲノム微生物学会
    • Place of Presentation
      長浜市
    • Related Report
      2012 Annual Research Report
  • [Presentation] 大腸菌細胞形態形成因子 RodZ のペプチドグリカン結合と細胞幅 制御の関係2013

    • Author(s)
      塩見 大輔
    • Organizer
      日本細菌学会
    • Place of Presentation
      千葉市
    • Related Report
      2012 Annual Research Report
  • [Presentation] RodZ タンパク質の細胞分裂面への局在:細胞幅の制御2012

    • Author(s)
      塩見 大輔, 仁木 宏典
    • Organizer
      第9回21世紀大腸菌研究会
    • Place of Presentation
      滋賀県長浜市
    • Related Report
      2012 Final Research Report
  • [Presentation] A role of midcell localization of cytoskeletal proteins in E. Coli2012

    • Author(s)
      Shiomi,D., and Niki, H. (National Institute of Genetics)
    • Organizer
      第85回日本細菌学会総会
    • Place of Presentation
      長崎県長崎市
    • Related Report
      2012 Final Research Report
  • [Presentation] Toward a manipulation of bacterial cell shap2011

    • Author(s)
      塩見 大輔, 仁木 宏典
    • Organizer
      細胞を作る研究会4.0
    • Place of Presentation
      大阪市
    • Related Report
      2012 Final Research Report
  • [Presentation] Cytoskeletal protein RodZ regulates the cell length in collaboration with a cell division apparatus in Escherichia coli2011

    • Author(s)
      塩見 大輔, 仁木 宏典
    • Organizer
      IUMS 2011
    • Place of Presentation
      北海道札幌市
    • Related Report
      2012 Final Research Report
  • [Presentation] 大腸菌の形態形成を司る細胞骨格タンパク質RodZ と細胞分裂の関係2011

    • Author(s)
      塩見 大輔, 仁木 宏典
    • Organizer
      第5回細菌学・若手コロッセウム
    • Place of Presentation
      高知県高知市
    • Related Report
      2012 Final Research Report
  • [Presentation] 細胞骨格タンパク質RodZ の分裂面への局在とその生理的意義2011

    • Author(s)
      塩見 大輔, 仁木 宏典
    • Organizer
      第8回21世紀大腸菌研究会
    • Place of Presentation
      長野県南木曾町
    • Related Report
      2012 Final Research Report
  • [Presentation] Geometrical Changes in Cell Shape between Rod and Round in Bacteria2010

    • Author(s)
      仁木宏典
    • Organizer
      The 11th Asian and Oceanian Conference on Transcription
    • Place of Presentation
      沖縄県 今帰仁村
    • Year and Date
      2010-07-03
    • Related Report
      2010 Annual Research Report
  • [Presentation] 大腸菌細胞骨格因子rodZ 欠損株の抑圧変異体の解析から見た細菌の形態形成変化2010

    • Author(s)
      塩見 大輔, 仁木 宏典
    • Organizer
      第4回細菌学・若手コロッセウム
    • Place of Presentation
      静岡県伊豆市
    • Related Report
      2012 Final Research Report
  • [Presentation] 大腸菌球状変異体rodZ 欠損株の抑圧変異株の解析から見た球状から桿状への形態変化の機構2010

    • Author(s)
      塩見 大輔, 仁木 宏典
    • Organizer
      第7回21世紀大腸菌研究会
    • Place of Presentation
      熊本県南阿蘇
    • Related Report
      2012 Final Research Report
  • [Book] Nucleoid organization and chromosome segregation In Sadaie2012

    • Author(s)
      Shiomi, D, & Niki, H
    • Related Report
      2012 Final Research Report
  • [Book] Bioresource and genomic database for E. coli and B2012

    • Author(s)
      Niki, H.
    • Related Report
      2012 Final Research Report
  • [Remarks]

    • URL

      http://www.nig.ac.jp/labs/MicroGen/

    • Related Report
      2012 Final Research Report
  • [Remarks] バクテリアの形を決める仕組み:全ゲノムシークエンスによる解析

    • URL

      http://www.nig.ac.jp/Research-Highlights/1170/1187.html

    • Related Report
      2012 Annual Research Report
  • [Remarks]

    • URL

      http://dx.doi.org/10.1016/B0-12-443710-9/00407-5

    • Related Report
      2011 Annual Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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