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Functional analysis on endogenous pararetrovirus in rice genome-relationship with rice tungro disease-

Research Project

Project/Area Number 22380001
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Breeding science
Research InstitutionHokkaido University

Principal Investigator

KISHIMA Yuji  北海道大学, 大学院・農学研究院, 教授 (60192556)

Co-Investigator(Renkei-kenkyūsha) KOYANAGI Kanako  北海道大学, 大学院・情報科学研究科, 准教授 (20362840)
YASUI Hideshi  九州大学, 大学院・農学研究院, 准教授 (70220142)
Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥19,110,000 (Direct Cost: ¥14,700,000、Indirect Cost: ¥4,410,000)
Fiscal Year 2012: ¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2011: ¥5,850,000 (Direct Cost: ¥4,500,000、Indirect Cost: ¥1,350,000)
Fiscal Year 2010: ¥8,710,000 (Direct Cost: ¥6,700,000、Indirect Cost: ¥2,010,000)
Keywordsイネ / ゲノム科学 / 耐病性 / ツングロ病 / RTBV / ERTBV / グラベリマ種 / ウイルス抵抗性 / qTDR5 / イネツングロ病 / ジャポニカ / インディカ / Oryza glaberrima / AT連続配列
Research Abstract

We have addressed two questions as to endogenous RTBV; theinsertion mechanism of ERTBV into rice genome and the relationship between ERTBVand RTBV resistance. ERTBVs are preferentially present in AT-rich repeats in ricegenome, and we described that AT-rich repeats have integrated chromosomal andepisomal DNAs, which would have been suspended in the nucleus. We also identified atolerance allele against RTBV, qTDR5, located on chromosome 5 by the genetic analysesusing the progenies between an African rice strain Oryza glaberrima WK18 and a japonicarice strain Taichung 65. The region in qTDR5 contains an ERTBV sequence.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (30 results)

All 2013 2012 2011 2010 Other

All Journal Article (13 results) (of which Peer Reviewed: 11 results) Presentation (14 results) (of which Invited: 1 results) Book (2 results) Remarks (1 results)

  • [Journal Article] イネゲノムの反復配列に基づく低温鈍感力の解析2013

    • Author(s)
      石黒聖也,佐藤裕,貴島祐治
    • Journal Title

      日本草地学会誌

      Volume: 59 Pages: 60-63

    • Related Report
      2012 Final Research Report
  • [Journal Article] イネのゲノム中のAT反復配列は種々のDNAを取り込む進化の原動力2013

    • Author(s)
      小柳香奈子,劉瑞芳,陳孫禄,水野美登利,貴島祐治
    • Journal Title

      日本草地学会誌

      Volume: 59 Pages: 55-59

    • Related Report
      2012 Final Research Report
  • [Journal Article] A pair of transposons coordinately suppresses gene expression, independent of pathways mediated by siRNA in Antirrhinum2013

    • Author(s)
      T. Uchiyama, S. Hiura, I. Ebinuma, M. Senda, T. Mikami, C. Martin and Y. Kishima
    • Journal Title

      New Phytologist

      Volume: 197 Pages: 431-440

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] A pair of transposons coordinately suppresses gene expression, independent of pathways mediated by siRNA in Antirrhinum.2013

    • Author(s)
      Uchiyama, T.
    • Journal Title

      New Phytologist

      Volume: 197 Issue: 2 Pages: 431-440

    • DOI

      10.1111/nph.12041

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Evolutionary force of AT-rich repeats to trap genomic and episomal DNAs in the rice genome: lessons from endogenous pararetrovirus2012

    • Author(s)
      R. Liu, K.O. Koyanagi, S. Chen and Y. Kishima
    • Journal Title

      The Plant Journal

      Volume: 72 Pages: 817-828

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] An apple atp9 pseudogene is maintained at high copy number in 'Golden Delicious' -type mitochondria but is present substoichiometrically in 'Delicious'-type mitochondria2012

    • Author(s)
      S. Kato, K. Kitazaki, A. Wakatsuki, Y. Kishima and T. Mikami
    • Journal Title

      Scientia Horticulturae

      Volume: 134 Pages: 237-240

    • NAID

      120003898281

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Evolutionary force of AT-rich repeats to trap genomic and episomal DNAs in the rice genome: lessons from endogenous pararetrovirus.2012

    • Author(s)
      Liu, R.
    • Journal Title

      The Plant Journal

      Volume: 72 Issue: 5 Pages: 817-828

    • DOI

      10.1111/tpj.12002

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An apple atp9 pseudogene is maintained at high copy number in 'Golden Delicious'-type mitochondria but is present substoichiom-etrically in 'Delicious'-type mitochondria2012

    • Author(s)
      S.Kato
    • Journal Title

      Scientia Horticulturae

      Volume: 134 Pages: 237-240

    • DOI

      10.1016/j.scienta.2011.10.030

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] An intact mitochondrial cox1 gene and a pseudogene with different genomic configurations are present in apple cultivars 'Golden Delicious' and 'Delicious': Evolutionary aspects2011

    • Author(s)
      A. Wakatsuki, K. Kitazaki, S. Kato, Y. Kishima and T. Mikami
    • Journal Title

      Scientia Horticulturae

      Volume: 130 Pages: 49-53

    • NAID

      120003898267

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Temperature controls nuclear import of Tam3 transposase in Antirrhinum2011

    • Author(s)
      K. Fujino, SN. Hashida, T. Ogawa, T. Natsume, T. Uchiyama, T. Mikami and Y. Kishima
    • Journal Title

      The Plant Journal

      Volume: 65 Pages: 146-155

    • NAID

      120003660580

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] An intact mitochondrial cox1 gene and a pseudogene with different genomic configurations are present in apple cultivars 'Golden Delicious' and 'Delicious' : Evolutionary aspects2011

    • Author(s)
      A.Wakatsuki
    • Journal Title

      Scientia Horticulturae

      Volume: 130 Issue: 1 Pages: 49-53

    • DOI

      10.1016/j.scienta.2011.05.037

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Temperature controls nuclear import of Tam3 transposase in Antirrhinum.2011

    • Author(s)
      Fujino, K.
    • Journal Title

      The Plant Journal

      Volume: 65 Pages: 146-155

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] トランスポゾンを指標にしたコシヒカリ品種内の遺伝的差異2010

    • Author(s)
      貴島祐治、堀田夕夏、石黒聖也、山村和照、塙章、内藤聡、佐野芳雄
    • Journal Title

      育種学研究

      Volume: 12 Pages: 81-86

    • NAID

      10030690483

    • Related Report
      2012 Final Research Report 2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] ゲノムにウイルス断片を持つイネ系統のウイルス抵抗性2012

    • Author(s)
      貴島祐治
    • Organizer
      日本育種学会2012年秋季大会ワークショップ
    • Place of Presentation
      京都産業大学
    • Year and Date
      2012-09-14
    • Related Report
      2012 Final Research Report
  • [Presentation] The comparative analyses on the seed performances in the rice hybrids with different combinations2012

    • Author(s)
      Yuya Ota, Kei Ogasawara and Yuji Kishima
    • Organizer
      XVth Meeting of the EUCARPIA Sction -Biometrics in Plant Breeding- Stuttgart-Hohenheim Germany
    • Related Report
      2012 Final Research Report
  • [Presentation] Evaluation of Genome-wide expression against the coolstress at the rice booting stage2012

    • Author(s)
      Seiya Ishiguro, Kei Ogasawara, Yutaka Sato and Yuji Kishima
    • Organizer
      XVth Meeting of the EUCARPIA Sction -Biometrics in Plant Breeding- Stuttgart-Hohenheim Germany
    • Related Report
      2012 Final Research Report
  • [Presentation] イネゲノムの反復配列に基づく低温鈍感力の解析2012

    • Author(s)
      貴島祐治
    • Organizer
      日本草地学会北海道大会企画シンポジウム2
    • Place of Presentation
      酪農学園大学北海道江別市
    • Related Report
      2012 Final Research Report
  • [Presentation] ゲノムにウイルス断片を持つイネ系統のウイルス抵抗性2012

    • Author(s)
      貴島祐治
    • Organizer
      日本育種学会
    • Place of Presentation
      京都産業大学(京都市)
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] イネゲノムの反復配列に基づく低温鈍感力の解析2012

    • Author(s)
      貴島祐治
    • Organizer
      日本草地学会北海道大会
    • Place of Presentation
      酪農学園大学(北海道江別市)
    • Related Report
      2012 Annual Research Report
  • [Presentation] イネゲノム反復配列の発現パターンから見た雄性生殖器官の特徴化2011

    • Author(s)
      貴島祐治,石黒聖也,太田雄也,佐藤裕
    • Organizer
      第83回日本遺伝学会シンポジウム
    • Place of Presentation
      京都大学農学部京都市
    • Year and Date
      2011-09-20
    • Related Report
      2012 Final Research Report
  • [Presentation] イネゲノム反復配列の発現パターンから見た雄性生殖器官の特徴化2011

    • Author(s)
      貴島祐治, 石黒聖也, 太田雄也, 佐藤裕
    • Organizer
      第83回日本遺伝学会シンポジウム
    • Place of Presentation
      京都大学農学部(京都府)(招待講演)
    • Year and Date
      2011-09-20
    • Related Report
      2011 Annual Research Report
  • [Presentation] Genomic properties of endogenous rice tungro bacilliform virus sequences in the rice genomes.2011

    • Author(s)
      Yuji Kishima
    • Organizer
      IRRI Special Seminer, International Rice Research Institute
    • Place of Presentation
      Philippines
    • Year and Date
      2011-03-01
    • Related Report
      2012 Final Research Report
  • [Presentation] Genomic properties of endogenous rice tungro bacilliform virus sequences in the rice genomes.2011

    • Author(s)
      Yuji Kishima
    • Organizer
      IRRI Special Seminer
    • Place of Presentation
      International Rice Research Institute, Philippines 招待講演
    • Year and Date
      2011-03-01
    • Related Report
      2010 Annual Research Report
  • [Presentation] Transcriptions of repeat sequences at boot stage in rice anther and its expression changes induced by low-temperature.2011

    • Author(s)
      Seiya Ishiguro, Yutaka Sato and Yuji Kishima
    • Organizer
      9International Plant Cold Hardiness Seminar
    • Place of Presentation
      Abbey of Neumunster, Luxembourg
    • Related Report
      2012 Final Research Report
  • [Presentation] Temperature-dependent nuclear import of Tam3 transposase in Antirrhinum.2011

    • Author(s)
      Kaien Fujino, Takashi Ogawa, Tomoko Natsume and Yuji Kishima
    • Organizer
      9International Plant Cold Hardiness Seminar
    • Place of Presentation
      Abbey of Neumunster, Luxembourg, Luxembourg
    • Related Report
      2012 Final Research Report
  • [Presentation] The structural properties of endogenous rice tungro bacilliform virus sequences in the rice genome.2010

    • Author(s)
      Ruifang Liu, Kanako O. Koyanagi and Yuji Kishima
    • Organizer
      3 International Rice Congress
    • Place of Presentation
      National Convention Center, Hanoi, Vietnam
    • Related Report
      2012 Final Research Report
  • [Presentation] The structural properties of endogenous rice tungro bacilliform virus sequences in the rice genome.2010

    • Author(s)
      Ruifang Liu
    • Organizer
      3^<rd> International Rice Congress
    • Place of Presentation
      Hanoi, Vietnam
    • Related Report
      2010 Annual Research Report
  • [Book] 植物育種学第4版 第2章1.遺伝子と形質発現 4.生殖様式と近交弱性2012

    • Author(s)
      貴島祐治
    • Total Pages
      288
    • Publisher
      文永堂出版
    • Related Report
      2011 Annual Research Report
  • [Book] 「植物の分子育種学」第5章トランスポゾンタギング2011

    • Author(s)
      貴島祐治
    • Total Pages
      205
    • Publisher
      講談社
    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://www.agr.hokudai.ac.jp/rfoa/abs/abs1-2.html

    • Related Report
      2012 Final Research Report

URL: 

Published: 2010-08-23   Modified: 2019-07-29  

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