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Studies on molecular mechanisms for functional evolution of bacteria in the environment

Research Project

Project/Area Number 22380047
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied microbiology
Research InstitutionTohoku University

Principal Investigator

NAGATA Yuji  東北大学, 大学院・生命科学研究科, 准教授 (30237531)

Co-Investigator(Kenkyū-buntansha) TSUDA Masataka  東北大学, 大学院・生命科学研究科, 教授 (90172022)
OHTSUBO Yoshiyuki  東北大学, 大学院・生命科学研究科, 助教 (40342761)
Research Collaborator DAMBORSKY Jiri  マサリク大学(チェコ共和国), 理学部, 教授
SENDA Toshiya  産業技術総合研究所, バイオメディシナル情報研究センター, 主任研究員
TANOKURA Masaru  東京大学, 大学院農学生命科学研究科, 教授
Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥18,590,000 (Direct Cost: ¥14,300,000、Indirect Cost: ¥4,290,000)
Fiscal Year 2012: ¥2,860,000 (Direct Cost: ¥2,200,000、Indirect Cost: ¥660,000)
Fiscal Year 2011: ¥3,640,000 (Direct Cost: ¥2,800,000、Indirect Cost: ¥840,000)
Fiscal Year 2010: ¥12,090,000 (Direct Cost: ¥9,300,000、Indirect Cost: ¥2,790,000)
Keywords環境細菌 / 自然生態系 / 人為起源物質 / 細菌進化 / 微生物機能開発
Research Abstract

To get insights into the functional evolution of bacteria in the environment, bacteria, which degrade man-made chlorinated pesticide γ-HCH, and dehalogenases, which are key enzymes for the degradation of chlorinated compounds, were analyzed in detail. (1) structure-function relationships of some dehalogenases were revealed and their evolution process was suggested, (2) the process of appearance and evolution of γ-HCH-degrading bacteria was proposed on the basis of the structure and function of their genomes and mobile genetic elements, and (3) the system for verifying evolution process of bacteria in the environment was constructed.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (168 results)

All 2013 2012 2011 2010

All Journal Article (33 results) (of which Peer Reviewed: 32 results) Presentation (133 results) (of which Invited: 4 results) Book (2 results)

  • [Journal Article] Coinetgrate-resolution of toluene-catabolic transposon Tn46512013

    • Author(s)
      Yano, H., H. Genka, Y. Ohtsubo, Y. Nagata, E.M. Top, M. Tsuda
    • Journal Title

      Plasmid

      Volume: 69 Issue: 1 Pages: 24-35

    • DOI

      10.1016/j.plasmid.2012.07.004

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Complete genome sequence of Acidovorax sp. KKS102, a polychlorinated biphenyl-degrading strain2012

    • Author(s)
      Ohtsubo, Y., F. Maruyama, H. Mitsui, Y. Nagata, M. Tsuda
    • Journal Title

      J Bacteriol

      Volume: 194 Issue: 24 Pages: 6970-6971

    • DOI

      10.1128/jb.01848-12

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] ParI, an orphan ParA family protein from Pseudomonas putida KT2440-specific genomic island, interferes with the partition system of IncP-7 plasmids2012

    • Author(s)
      Miyakoshi, M., M. Shintani, K. Inoue, T. Terabayashi, F. Sai, M. Ohkuma, H. Nojiri, Y. Nagata, M. Tsuda
    • Journal Title

      Environ Microbiol

      Volume: 14 Issue: 11 Pages: 2946-2959

    • DOI

      10.1111/j.1462-2920.2012.02861.x

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Crystallization and preliminary X-ray analysis of the haloalkane dehalogenase DatA from Agrobacterium tumefaciens C582012

    • Author(s)
      Mase, T., H. Yabuki, M. Okai, J. Ohtsuka, F. L. Imai, Y. Nagata, and M. Tanokura
    • Journal Title

      Acta Crystallographica Section F

      Volume: F68 Issue: 6 Pages: 652-654

    • DOI

      10.1107/s1744309112013942

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Conjugal transfer of polychlorinated biphenyl/biphenyl degradation genes in Acidovorax sp. strain KKS102, which are located on an integrative and conjugative element2012

    • Author(s)
      Ohtsubo Y., Y. Ishibashi, H. Naganawa, S. Hirokawa, S. Atobe, Y. Nagata, M. Tsuda
    • Journal Title

      J Bacteriol

      Volume: 194 Issue: 16 Pages: 4237-4248

    • DOI

      10.1128/jb.00352-12

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Cloning ofγ-hexachlorocyclohexane dehydrochlorinase gene with its flanking regions from soil byactivity-based screening techniques2012

    • Author(s)
      Ito, M., A. Ono, Y. Ohtsubo, M. Tsuda, and Y. Nagata
    • Journal Title

      European J. Soil Biology

      Volume: 52 Pages: 16-19

    • DOI

      10.1016/j.ejsobi.2012.05.001

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Povotal role of anthranilate dioxygenase genes in the adaptation of Burkholderia multivorans ATCC17616 in soil2012

    • Author(s)
      Nishiyama, E., Y. Ohtsubo, Y. Yamamoto, Y. Nagata, and M. Tsuda
    • Journal Title

      FEMS Microbiology Letters

      Volume: 330 Issue: 1 Pages: 46-55

    • DOI

      10.1111/j.1574-6968.2012.02532.x

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Suppression of pleiotrophic phenotypes of Burkholderia multivorans fur mutant by oxyR mutation2012

    • Author(s)
      Kimura, A., S. Yuhara, Y. Ohtsubo, Y. Nagata, and M. Tsuda
    • Journal Title

      Microbiology

      Volume: 158 Issue: 5 Pages: 1284-1293

    • DOI

      10.1099/mic.0.057372-0

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Molecular Bases of Enantioselectivity of Haloalkane Dehalogenase DbjA2011

    • Author(s)
      佐藤優花里、夏目亮、Zbynek Prokop, Jan Brezovsky, Radka Chaloupkova, Jiri Damborsky、 永田裕二、千田俊哉
    • Journal Title

      Nihon Kessho Gakkaishi

      Volume: 53 Issue: 2 Pages: 124-129

    • DOI

      10.5940/jcrsj.53.124

    • NAID

      10028253974

    • ISSN
      0369-4585, 1884-5576
    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genomic organization and genomic structural rearrangements of Sphingobium japonicum UT26, an archetypal gamma-hexachlorocyclohexane-degrading bacterium2011

    • Author(s)
      Nagata, Y., S. Natsui, R. Endo, Y. Ohtsubo, N. Ichikawa, A. Ankai, A. Oguchi, S. Fukui, N. Fujita, and M. Tsuda
    • Journal Title

      Enzyme and Microbial Technology

      Volume: 49 Issue: 6-7 Pages: 499-508

    • DOI

      10.1016/j.enzmictec.2011.10.005

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Stereoselectivity and conformational stability of haloalkane dehalogenase DbjA from Bardyrhizobium japonicum USDA110: the effect of pH and temperature2011

    • Author(s)
      Chaloupkova, R., Z. Prokop, Y. Sato, Y. Nagata, and J. Damborsky
    • Journal Title

      FEBS J

      Volume: 278 Issue: 15 Pages: 2728-2738

    • DOI

      10.1111/j.1742-4658.2011.08203.x

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Development of a crystallization protocol for the DbeA1 variant of novel haloalkane dehalogenase from Bradyrhizobium elkanii USDA942011

    • Author(s)
      Prudnikova, T., R. Chalouplova, Y. Sato, Y. Nagata, O. Degtjarik, M. Kuty, P. Rezacova, J. Damborsky, and I. Kuta Smatanova
    • Journal Title

      Crysta Growth & Design

      Volume: 11 Issue: 2 Pages: 516-519

    • DOI

      10.1021/cg1013363

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Biochemical characteristics of the novel haloalkane dehalogenase DatA isolated from the plant pathogen Agrobacterium tumefaciens C582011

    • Author(s)
      Hasan, K., A. Fortova, T. Koudelakova, R. Chalooupkova, M. Ishitsuka, Y. Nagata, J. Damborsky, and Z. Prokop
    • Journal Title

      Appl. Environ. Microbial

      Volume: 77 (5) Issue: 5 Pages: 1881-1884

    • DOI

      10.1128/aem.02109-10

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] The <I>lin</I> Genes for &gamma;-Hexachlorocyclohexane Degradation in <I>Sphingomonas</I> sp. MM-1 Proved to Be Dispersed across Multiple Plasmids2011

    • Author(s)
      Tabata, M., R. Endo, M. Ito, Y. Ohtsubo, A. Kumar, M. Tsuda, and Y. Nagata
    • Journal Title

      Bioscience, Biotechnology, and Biochemistry

      Volume: 75 Issue: 3 Pages: 466-472

    • DOI

      10.1271/bbb.100652

    • NAID

      10028201533

    • ISSN
      0916-8451, 1347-6947
    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] The lin genes for γ-hexachlorocyclohexane degradation in Sphingomonas sp.MM-1 proved to be dispersed across multiple plasmids2011

    • Author(s)
      Tabata, M., et al
    • Journal Title

      Biosci.Biotechnol.Biochem.

      Volume: 75 Pages: 466-472

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Biochemical characteristics of the novel haloalkane dehalogenase DatAisolated from the plant pathogen Agrobacterium tumefaciens C582011

    • Author(s)
      Hasan, K., et al
    • Journal Title

      Appl.Environ.Microbial.

      Volume: 77 Pages: 1881-1884

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 芳香族化合物による土壌撹乱における微生物遺伝子プールの変動2010

    • Author(s)
      加藤広海、大坪嘉行、永田裕二、津田雅孝
    • Journal Title

      環境バイオテクノロジー学会誌

      Volume: 10(2) Pages: 63-70

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] 特集「生態機能と環境保全」に寄せて2010

    • Author(s)
      永田裕二
    • Journal Title

      環境バイオテクノロジー学会誌

      Volume: 10(2) Pages: 52-52

    • Related Report
      2012 Final Research Report 2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 環境バイオテクノロジー学会シンポジウム2010

    • Author(s)
      永田裕二
    • Journal Title

      「生態機能と環境保全」微生物生態学会誌

      Volume: 25(2) Pages: 77-78

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] ゲノム解析ソフトウェアGenomeMatcher2010

    • Author(s)
      大坪嘉行、大坪和香子、永田裕二、津田雅孝
    • Journal Title

      化学と生物

      Volume: 48(5) Pages: 313-319

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Complete genome sequence of the representativeγ-hexachlorocyclohexane-degrading bacteriumSphingobium japonicum UT262010

    • Author(s)
      Nagata, Y., Y. Ohtsubo, R. Endo, N. Ichikawa, A. Ankai, A. Oguchi, S. Fukui, N. Fujita, and M. Tsuda
    • Journal Title

      J. Bacteriology

      Volume: 192 Issue: 21 Pages: 5852-5853

    • DOI

      10.1128/jb.00961-10

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of γ-hexachlorocyclohexane dehydrochlorinase LinA from Sphingobium japonicum UT262010

    • Author(s)
      Okai, M., K. Kubota, M. Fukuda, Y. Nagata, K. Nagata, and M. Tanokura
    • Journal Title

      J. Mol. Biol

      Volume: 403 Issue: 2 Pages: 260-269

    • DOI

      10.1016/j.jmb.2010.08.043

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Complete nucleotide sequence of TOL plasmid pDK1 provides evidence for evolutionary history of IncP-7 catabolic plasmids2010

    • Author(s)
      Yano, H., M. Miyakoshi, K. Ohshima, M. Tabata, Y. Nagata, M. Hattori, and M. Tsuda
    • Journal Title

      J.Bacteriol

      Volume: 192 Issue: 17 Pages: 4337-4347

    • DOI

      10.1128/jb.00359-10

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Enantioselectivity of Haloalkane Dehalogenases and its Modulation by Surface Loop Engineering2010

    • Author(s)
      Prokop, Z., Y. Sato, J. Brezovsky, T. Mozga, R. Chalooupkova, T. Koudelakova, P. Jerabek, V. Stepankova, R. Natsume, J. G.E. van Leeuwen, D. B. Janssen, J. Florian, Y. Nagata, T. Senda, and J. Damborsky
    • Journal Title

      Angewandte Chemie

      Volume: 49 Issue: 35 Pages: 6111-6115

    • DOI

      10.1002/ange.201001753

    • Related Report
      2012 Final Research Report 2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of Burkholderia multivorans ATCC 17616 genes induced in soil environment by in vivo expression technology2010

    • Author(s)
      Nishiyama, E., Y. Ohtsubo, Y. Nagata, and M. Tsuda
    • Journal Title

      Environmental Microbiology

      Volume: 12(9) Issue: 9 Pages: 2539-2558

    • DOI

      10.1111/j.1462-2920.2010.02227.x

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Analysis of extracellular alginate lyase and its gene from a marine bacterial strain, Pseudoalteromonas atlantica AR062010

    • Author(s)
      Matsushima, R., H. Danno, M. Uchida, K. Ishihara, T. Suzuki, M. Kaneniwa, Y. Ohtsubo, Y. Nagata, and M. Tsuda
    • Journal Title

      Appl Microbiol Biotechnol

      Volume: 86 Pages: 567-576

    • Related Report
      2012 Final Research Report 2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Identification of Burkholderia multivorans ATCC 17616 genes induced in soil environment by in vivo expression technology2010

    • Author(s)
      Nishiyama, E., et al
    • Journal Title

      Environmental Microbiology

      Volume: 12 Pages: 2539-2558

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Complete nucleotide sequence of TOL plasmid pDK1 provides evidence for evolutionary history of IncP-7 catabolic plasmids2010

    • Author(s)
      Yano, H., et al
    • Journal Title

      J.Bacteriol.

      Volume: 192 Pages: 4337-4347

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Crystal structure of γ-hexachlorocyclohexane dehydrochlorinase LinA from Sphingobium japonicum UT262010

    • Author(s)
      Okai, M., et al
    • Journal Title

      J.Mol.Biol.

      Volume: 403 Pages: 260-269

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Complete genome sequence of the representative γ-hexachlorocyclohexane-degrading bacterium Sphingobium japonicum UT262010

    • Author(s)
      Nagata, Y., et al
    • Journal Title

      J.Bacteriol.

      Volume: 192 Pages: 5852-5853

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] ゲノム解析ソフトウェアGenomeMatcher2010

    • Author(s)
      大坪嘉行, ら
    • Journal Title

      化学と生物

      Volume: 48 Pages: 313-319

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 環境バイオテクノロジー学会シンポジウム「生態機能と環境保全」2010

    • Author(s)
      永田裕二
    • Journal Title

      微生物生態学会誌

      Volume: 25 Pages: 77-78

    • Related Report
      2010 Annual Research Report
  • [Journal Article] 芳香族化合物による土壌撹乱における微生物遺伝子プールの変動2010

    • Author(s)
      加藤広海, ら
    • Journal Title

      環境バイオテクノロジー学会誌

      Volume: 10 Pages: 63-70

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] 人為起源物質分解細菌の出現と進化2013

    • Author(s)
      永田裕二
    • Organizer
      日本農芸化学会第20回記念フロンティアシンポジウム
    • Place of Presentation
      日仙台(招待講演)
    • Related Report
      2012 Final Research Report
  • [Presentation] 人為起源環境汚染物質分解能を有するスフィンゴモナス細菌群のゲノムと可動性遺伝因子に関する研究2013

    • Author(s)
      永田裕二、田端理朗、大畑智史、大坪嘉行、津田雅孝
    • Organizer
      日本農芸化学会2013年大会
    • Place of Presentation
      東北大学(仙台)(口頭発表)
    • Related Report
      2012 Final Research Report
  • [Presentation] 人為起源物質分解能を有するsphingomonad細菌群のゲノムと可動性遺伝因子2013

    • Author(s)
      永田裕二、大畑智史、田端理朗、大坪嘉行、津田雅孝
    • Organizer
      第7回日本ゲノム微生物学会
    • Place of Presentation
      長浜バイオ大学(長浜)(口頭発表)
    • Related Report
      2012 Final Research Report
  • [Presentation] リダクターゼ機能相補による新規芳香族化合物分解酵素遺伝子の芳香族化合物複合汚染土壌メタゲノムからの探索2013

    • Author(s)
      永山浩史ら
    • Organizer
      第7回日本ゲノム微生物学会年会
    • Place of Presentation
      長浜
    • Related Report
      2012 Annual Research Report
  • [Presentation] 土壌細菌Burkholderia multivorans ATCC17616株におけるFurの機能及び発現制御機構の解析2013

    • Author(s)
      佐藤拓哉ら
    • Organizer
      第7回日本ゲノム微生物学会年会
    • Place of Presentation
      長浜
    • Related Report
      2012 Annual Research Report
  • [Presentation] gamma-HCH分解能を示すSphingobium属細菌のTKS株とMI1205株の全ゲノム配列決定とgamma-HCH分解関与遺伝子群周辺領域の解析2013

    • Author(s)
      大畑智史ら
    • Organizer
      第7回日本ゲノム微生物学会年会
    • Place of Presentation
      長浜
    • Related Report
      2012 Annual Research Report
  • [Presentation] 人為起源物質分解能を有するsphingomonad細菌群のゲノムと可動性遺伝因子2013

    • Author(s)
      永田裕二ら
    • Organizer
      第7回日本ゲノム微生物学会年会
    • Place of Presentation
      長浜
    • Related Report
      2012 Annual Research Report
  • [Presentation] Finishing関連の3つのツール: GenoFinisher、AceFileViewer、ShortReadManager2013

    • Author(s)
      大坪嘉行ら
    • Organizer
      第7回日本ゲノム微生物学会年会
    • Place of Presentation
      長浜
    • Related Report
      2012 Annual Research Report
  • [Presentation] IncP-9群プラスミドNAH7の接合伝達開始配列の解析2013

    • Author(s)
      岸田康平ら
    • Organizer
      第7回日本ゲノム微生物学会年会
    • Place of Presentation
      長浜
    • Related Report
      2012 Annual Research Report
  • [Presentation] 次世代シーケンサーによる土壌細菌の環境適応遺伝子の新規探索手法の開発2013

    • Author(s)
      石橋蓉子ら
    • Organizer
      第7回日本ゲノム微生物学会年会
    • Place of Presentation
      長浜
    • Related Report
      2012 Annual Research Report
  • [Presentation] 撹乱に対する土壌微生物のレジリエンス2013

    • Author(s)
      加藤広海ら
    • Organizer
      第7回日本ゲノム微生物学会年会
    • Place of Presentation
      長浜
    • Related Report
      2012 Annual Research Report
  • [Presentation] 細菌群集動態のモデリング2013

    • Author(s)
      伊藤貴広ら
    • Organizer
      第7回日本ゲノム微生物学会年会
    • Place of Presentation
      長浜
    • Related Report
      2012 Annual Research Report
  • [Presentation] 芳香族化合物複合汚染土壌における新規芳香族化合物分解酵素遺伝子の機能相補に基づく探索2013

    • Author(s)
      永山浩史ら
    • Organizer
      日本農芸化学会2013年大会
    • Place of Presentation
      仙台
    • Related Report
      2012 Annual Research Report
  • [Presentation] 人為起源環境汚染物質分解能を有するスフィンゴモナス細菌群のゲノムと可動性遺伝因子に関する研究2013

    • Author(s)
      永田裕二ら
    • Organizer
      日本農芸化学会2013年大会
    • Place of Presentation
      仙台
    • Related Report
      2012 Annual Research Report
  • [Presentation] ハロアルカンデハロゲナーゼ DatAの立体構造解析2013

    • Author(s)
      管 立軍ら
    • Organizer
      日本農芸化学会2013年大会
    • Place of Presentation
      仙台
    • Related Report
      2012 Annual Research Report
  • [Presentation] 多様な細菌のゲノム上に存在するハロアルカンデハロゲナーゼの 機能解析2013

    • Author(s)
      田中裕興ら
    • Organizer
      日本農芸化学会2013年大会
    • Place of Presentation
      仙台
    • Related Report
      2012 Annual Research Report
  • [Presentation] IncP-9群 NAH7接合伝達系のoriTを中心とした解析2013

    • Author(s)
      岸田康平ら
    • Organizer
      日本農芸化学会2013年大会
    • Place of Presentation
      仙台
    • Related Report
      2012 Annual Research Report
  • [Presentation] フィニッシング支援ツールGenoFinisherとAceFileViewer2013

    • Author(s)
      大坪嘉行ら
    • Organizer
      日本農芸化学会2013年大会
    • Place of Presentation
      仙台
    • Related Report
      2012 Annual Research Report
  • [Presentation] γ-HCH分解細菌Sphingomonas sp. MM-1株が有する多重プラスミドに 関する研究2013

    • Author(s)
      田端理朗ら
    • Organizer
      日本農芸化学会2013年大会
    • Place of Presentation
      仙台
    • Related Report
      2012 Annual Research Report
  • [Presentation] 人為起源物質分解細菌の出現と進化2013

    • Author(s)
      永田裕二
    • Organizer
      日本農芸化学会 第20回記念フロンティアシンポジウム
    • Place of Presentation
      仙台
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 有機塩素系殺虫剤gamma-HCH分解細菌のゲノムと可動性遺伝因子に関する研究2012

    • Author(s)
      永田裕二,田端理朗,大畑智史,大坪嘉行,津田雅孝
    • Organizer
      第64回日本生物工学会大会
    • Place of Presentation
      神戸(口頭発表)
    • Related Report
      2012 Final Research Report
  • [Presentation] Genomes and mobile genetic elements of gamma-hexachlorocyclohexane-degrading bacterial strains2012

    • Author(s)
      Y. Nagata, M. Tabata, S. Ohhata, Y. Ohtsubo, and M. Tsuda
    • Organizer
      15th International Biotechnology Symposium and Exhibition (IBS2012) Daegu
    • Place of Presentation
      Korea(口頭発表)
    • Related Report
      2012 Final Research Report
  • [Presentation] 細菌の有機塩素系殺虫剤分解資化能力を 支える ABC トランスポーター2012

    • Author(s)
      永田裕二 、遠藤諒、 大坪嘉行 、 津田雅孝
    • Organizer
      第7回トランスポーター研究会年会
    • Place of Presentation
      京都(招待講演)
    • Related Report
      2012 Final Research Report
  • [Presentation] Metagenomic Analysis of Microbial Community in Soil Contaminated with Aromatic Pollutants2012

    • Author(s)
      M. Tsudaら
    • Organizer
      Japan-Finland Biotechnology Symposium 2012
    • Place of Presentation
      Sendai, Japan
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 細菌の有機塩素系殺虫剤分解資化能力を支えるABCトランスポーター2012

    • Author(s)
      永田裕二ら
    • Organizer
      第7回トランスポーター研究会年会
    • Place of Presentation
      京都
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] 環境汚染物質gamma-hexachlorocyclohexaneの分解能を有するSphingobium sp. TKS株のゲノム構造の解明2012

    • Author(s)
      大畑智史ら
    • Organizer
      環境バイオテクノロジー学会2012年度大会
    • Place of Presentation
      宇治
    • Related Report
      2012 Annual Research Report
  • [Presentation] 培養非依存的手法を用いた芳香族化合物複合汚染土壌からの新規分解酵素遺伝子の探索2012

    • Author(s)
      永山浩史ら
    • Organizer
      環境バイオテクノロジー学会2012年度大会
    • Place of Presentation
      宇治
    • Related Report
      2012 Annual Research Report
  • [Presentation] 細菌由来のβ-ヘキサクロロシクロヘキサン (β-HCH) 分解酵素linB_MIを導入したカボチャ毛状根のβ-HCH分解能の解析2012

    • Author(s)
      七里吉彦ら
    • Organizer
      第30回 日本植物細胞分子生物学会 (生駒) 大会・シンポジウム
    • Place of Presentation
      奈良県生駒市
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Response of soil microbial community against pulse perturbation by aromatic pollutants2012

    • Author(s)
      H. Kato et al.
    • Organizer
      14th International Symposium on Microbial Ecology
    • Place of Presentation
      Copenhagen, Denmark
    • Related Report
      2012 Annual Research Report
  • [Presentation] Multiple plasmids of γ-hexachlorocylohexane-degrading bacterium Sphingomonas sp. MM-12012

    • Author(s)
      M. Tabata et al.
    • Organizer
      International Plasmid Biology Conference 2012
    • Place of Presentation
      Santander, Spain
    • Related Report
      2012 Annual Research Report
  • [Presentation] Relationship between intergeneric conjugative transfer of plasmid NAH7 and nitrogen-related phosphotransferase system2012

    • Author(s)
      K. Inoue et al.
    • Organizer
      International Plasmid Biology Conference 2012
    • Place of Presentation
      Santander, Spain
    • Related Report
      2012 Annual Research Report
  • [Presentation] Genomes and mobile genetic elements of gamma-hexachlorocyclohexane-degrading bacterial strains2012

    • Author(s)
      Y. Nagata et al.
    • Organizer
      15th International Biotechnology Symposium and Exhibition (IBS 2012)
    • Place of Presentation
      Daegu, Korea
    • Related Report
      2012 Annual Research Report
  • [Presentation] Isolation of aromatic ring-hydroxylating oxygenase genes by cultivation-independent functional screening of metagenome from soil artificially contaminated with aromatic hydrocarbons2012

    • Author(s)
      H. Nagayama et al.
    • Organizer
      15th International Biotechnology Symposium and Exhibition (IBS 2012)
    • Place of Presentation
      Daegu, Korea
    • Related Report
      2012 Annual Research Report
  • [Presentation] 有機塩素系殺虫剤gamma-HCH分解細菌のゲノムと可動性遺伝因子に関する研究2012

    • Author(s)
      永田裕二ら
    • Organizer
      第64回日本生物工学会大会
    • Place of Presentation
      神戸
    • Related Report
      2012 Annual Research Report
  • [Presentation] 細菌ゲノムに存在する多様なハロアルカンデハロゲナーゼ遺伝子の機能解析2012

    • Author(s)
      田中裕興ら
    • Organizer
      第64回日本生物工学会大会
    • Place of Presentation
      神戸
    • Related Report
      2012 Annual Research Report
  • [Presentation] 有機塩素系殺虫剤gamma-HCH分解細菌が突然変異により炭素源非添加無機寒天培地上で生育可能となる機構の解析2012

    • Author(s)
      平野丈ら
    • Organizer
      第64回日本生物工学会大会
    • Place of Presentation
      神戸
    • Related Report
      2012 Annual Research Report
  • [Presentation] ハロアルカンデハロゲナーセLinBのbeta-HCH分解活性に関する機能進化2012

    • Author(s)
      田中裕興ら
    • Organizer
      第85回日本生化学会大会・第35回日本分子生物学会年会合同大会
    • Place of Presentation
      福岡
    • Related Report
      2012 Annual Research Report
  • [Presentation] Genetic analysis of multiple plasmids in γ-hexachlorocylohexane-degrading bacterium Sphingomonas sp. MM-12012

    • Author(s)
      M. Tabata et al.
    • Organizer
      International Forum for Ecosystem Adaptability Science IV: Interface Between Policy and Science
    • Place of Presentation
      Sendai, Japan
    • Related Report
      2012 Annual Research Report
  • [Presentation] Analysis of nitrogen-related phosphotransferase system in recipient cells involved in regulation of conjugative transfer2012

    • Author(s)
      K. Inoue et al.
    • Organizer
      International Forum for Ecosystem Adaptability Science IV: Interface Between Policy and Science
    • Place of Presentation
      Sendai, Japan
    • Related Report
      2012 Annual Research Report
  • [Presentation] 土壌攪乱に対し同調して動く遺伝子群の解析2012

    • Author(s)
      加藤広海, ら
    • Organizer
      第6回日本ゲノム微生物学会年会
    • Place of Presentation
      東京・立教大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] 土壌細菌群集団の移植と芳香族化合物による汚染化の変動解析2012

    • Author(s)
      永山浩史, ら
    • Organizer
      第6回日本ゲノム微生物学会年会
    • Place of Presentation
      東京・立教大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] GenoFinisherを用いたPseudomonas sp.CF600ゲノムの完全配列決定2012

    • Author(s)
      奥野周, ら
    • Organizer
      第6回日本ゲノム微生物学会年会
    • Place of Presentation
      東京・立教大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] 有機塩素系殺虫剤gamma-hexachlorocyclohexane分解能を有するSphingobium sp.TKS株のゲノム解析2012

    • Author(s)
      大畑智史, ら
    • Organizer
      第6回日本ゲノム微生物学会年会
    • Place of Presentation
      東京・立教大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] Burkholderia multivorans ATCC 17616株ゲノムからSTM法で選抜した土壌環境下での生残関与候補遺伝子の解析2012

    • Author(s)
      石橋蓉子, ら
    • Organizer
      第6回日本ゲノム微生物学会年会
    • Place of Presentation
      東京・立教大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] Sphingobium sp.MI1205株由来のハロアルカンデハロゲナーゼLinBの立体構造解析2012

    • Author(s)
      岡井公彦, ら
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都・京都女子大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] フィニッシング用のツールGenoFinisherの開発2012

    • Author(s)
      大坪嘉行, ら
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都・京都女子大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] 芳香族化合物汚染土壌における経時的メタゲノムによって明らかになった土壌微生物の適応反応2012

    • Author(s)
      加藤広海, ら
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都・京都女子大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] 土壌細菌Burkholderia multivorans ATCC 17616株の鉄応答転写因子Furと過酸化水素応答転写因子OxyRの各種表現型への関与2012

    • Author(s)
      木村明音, ら
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都・京都女子大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] ナフタレン分解プラスミドNAH7の接合伝達関連遺伝子群のsingle cellレベルでの発現解析2012

    • Author(s)
      井上慧, ら
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都・京都女子大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] 培養非依存的手法による土壌からの新規芳香族化合物分解遺伝子の探索2012

    • Author(s)
      永山浩史, ら
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都・京都女子大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] Sphingobium sp.MI1205株由来のハロアルカンデハロゲナーゼLinB_MIにおけるbeta-HCH分解活性に重要なアミノ酸残基の同定2012

    • Author(s)
      森内良太, ら
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都・京都女子大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] IncP-7群プラスミドの接合伝達宿主域を規定する因子の探索2012

    • Author(s)
      瀬谷学人, ら
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都・京都女子大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] ゲノム情報を利用した多様な細菌由来のハロアルカンデハロゲナーゼの解析2012

    • Author(s)
      田中裕興, ら
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都・京都女子大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] 有機塩素系殺虫剤gamma-HCH分解細菌Sphingobium japonicum UT26株の炭素源非添加無機寒天培地上で生育する突然変異株の遺伝学的解析2012

    • Author(s)
      平野丈, ら
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都・京都女子大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] STM法で同定した土壌細菌Burkholderia multivorans ATCC 17616株の土壌環境下での生残に重要な遺伝子の解析2012

    • Author(s)
      石橋蓉子, ら
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都・京都女子大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] 環境汚染物質分解能を担うプラスミドの水平伝達2012

    • Author(s)
      津田雅孝, ら
    • Organizer
      日本農芸化学会2012年度大会シンポジウム
    • Place of Presentation
      京都・京都女子大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] 微生物ドラフトゲノム配列のフィニッシング用ツール2012

    • Author(s)
      大坪嘉行, ら
    • Organizer
      第85回日本細菌学会総会
    • Place of Presentation
      長崎
    • Related Report
      2011 Annual Research Report
  • [Presentation] 微生物遺伝子資源の活用技術2011

    • Author(s)
      永田裕二、大坪嘉行、津田雅孝
    • Organizer
      東北大学-産総研連携公開講演会
    • Place of Presentation
      東京・アキバホール
    • Year and Date
      2011-07-28
    • Related Report
      2012 Final Research Report
  • [Presentation] 「人為起源の環境汚染物質分解能を有する細菌ゲノムのダイナミズム」理研シンポジウム「微生物研究の潮流とそれを支えるリソース基盤」2011

    • Author(s)
      永田裕二
    • Organizer
      理研和光キャンパス
    • Place of Presentation
      鈴木梅太郎ホール(招待講演)
    • Year and Date
      2011-03-11
    • Related Report
      2012 Final Research Report
  • [Presentation] 人為起源の環境汚染物質分解能を有する細菌ゲノムのダイナミズム2011

    • Author(s)
      永田裕二
    • Organizer
      理研シンポジウム「微生物研究の潮流とそれを支えるリソース基盤」
    • Place of Presentation
      和光・理研
    • Year and Date
      2011-03-11
    • Related Report
      2010 Annual Research Report
  • [Presentation] Aerobic degradation of lindane(γ-hexachlorocyclohexane) in Sphingobium japonicum UT26 and its biochemical and molecular basis"Indo-Swiss-Collaboration in Biotechnology" International Conference "Recent Trends in Developing Bioremediation Strategies for Hexachlorocyclohexane (HCH) & Other Chlorinated Contaminants"2011

    • Author(s)
      Y. Nagata, Y. Ohtsubo, and M.Tsuda
    • Organizer
      University of Delhi
    • Place of Presentation
      Delhi, India(基調講演)
    • Related Report
      2012 Final Research Report
  • [Presentation] Genomic organization and its structural dynamism of Sphingobium japonicum UT26, an archetypal γ-hexachlorocyclohexane-degrading bacterium. "Indo-Swiss-Collaboration inBiotechnology" International Conference "Recent Trends in Developing Bioremediation Strategies for Hexachlorocyclohexane (HCH) & Other Chlorinated Contaminants"2011

    • Author(s)
      Y. Nagata ,S. Natsui, Y. Ohtsubo, N. Ichikawa, A. Ankai, A. Oguch, N. Fujita, and M. Tsuda
    • Organizer
      University of Delhi
    • Place of Presentation
      Delhi, India(招待講演)
    • Related Report
      2012 Final Research Report
  • [Presentation] Structural insight into the catalytic mechanism of enzyme for bioremediation2011

    • Author(s)
      Masaru Tanokura, et al
    • Organizer
      BIT Life Sciences' 2^<nd> Symposium on Enzymes and Biocatalysis
    • Place of Presentation
      Dalian, China
    • Related Report
      2011 Annual Research Report
  • [Presentation] Molecular bases of enatioselectivity of haloalkane dehalogenase DbjA2011

    • Author(s)
      Yukari Sato, et al
    • Organizer
      BIT Life Sciences' 2^<nd> Symposium on Enzymes and Biocatalysis
    • Place of Presentation
      Dalian, China
    • Related Report
      2011 Annual Research Report
  • [Presentation] Sphingobium sp.MI1205株由来のハロアルカンデハロゲナーゼLinB_MI特異的なbeta-HCH分解活性に重要なアミノ酸残基の同定2011

    • Author(s)
      森内良太, ら
    • Organizer
      環境バイオテクノロジー学会2011年度大会
    • Place of Presentation
      東京・東京大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] 土壌細菌Burkholderia multivorans ATCC 17616株の土壌特異的発現遺伝子の解析2011

    • Author(s)
      三浦那智, ら
    • Organizer
      環境バイオテクノロジー学会2011年度大会
    • Place of Presentation
      東京・東京大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] Sphingobium sp.MI1205株由来の脱ハロゲン酵素LinB_MI特異的なbeta-HCH分解活性に重要なアミノ酸残基の同定2011

    • Author(s)
      森内良太, ら
    • Organizer
      日本ゲノム微生物学会ワークショップ
    • Place of Presentation
      仙台・東北大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] ナフタレン分解プラスミドNAH7の接合伝達制御に関与する受容菌のリン酸基転移系2011

    • Author(s)
      井上慧, ら
    • Organizer
      日本ゲノム微生物学会ワークショップ
    • Place of Presentation
      仙台・東北大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] 土壌細菌Burkholderia multivorans ATCC 17616株のfur破壊株のROS/NOS高感受性とoxyR欠失による表現型回復機構2011

    • Author(s)
      木村明音, ら
    • Organizer
      日本ゲノム微生物学会ワークショップ
    • Place of Presentation
      仙台・東北大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] 有機塩素系殺虫剤gamma-hexachlorocyclohexane分解細菌Sphingomonas sp.MM-1株が保持する分解関連プラスミドの塩基配列解析と機能解析2011

    • Author(s)
      田端理朗, ら
    • Organizer
      日本ゲノム微生物学会ワークショップ
    • Place of Presentation
      仙台・東北大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] 土壌細菌Burkholderia multivorans ATCC 17616株の土壌環境特異的発現遺伝子の解析2011

    • Author(s)
      三浦那智, ら
    • Organizer
      日本ゲノム微生物学会ワークショップ
    • Place of Presentation
      仙台・東北大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] 土壌メタゲノムから見る,芳香族化合物汚染により誘導される微生物群集の反応2011

    • Author(s)
      加藤広海, ら
    • Organizer
      日本ゲノム微生物学会ワークショップ
    • Place of Presentation
      仙台・東北大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] 芳香族化合物複合汚染土壌由来のメタゲノムライブラリからの機能相補による新規リダクターゼ遺伝子の探索2011

    • Author(s)
      永山浩史, ら
    • Organizer
      日本ゲノム微生物学会ワークショップ
    • Place of Presentation
      仙台・東北大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] 残留性有機汚染物質(POPs)分解酵素遺伝子を導入したカボチャ毛状根によるヘキサクロロシクロヘキサン分解能の解析2011

    • Author(s)
      七里吉彦, ら
    • Organizer
      第29回日本植物細胞分子生物学会大会
    • Place of Presentation
      福岡・九州大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] Fluctuation pattern of gene pools of microbiota in aromatic hydrocarbon-contaminated soil by sequential metagenomic analysis2011

    • Author(s)
      Hiromi Kato, et al
    • Organizer
      International Union of Microbiological Societies 2011 Congress
    • Place of Presentation
      Sapporo, Japan
    • Related Report
      2011 Annual Research Report
  • [Presentation] Nitrogen-related phosphotransferase system of Pseudomonas putida KT2440 exerts negative effect on conjugative acquisition of naphthalene-catabolic plasmid NAH72011

    • Author(s)
      Kei Inoue, et al
    • Organizer
      International Union of Microbiological Societies 2011 Congress
    • Place of Presentation
      Sapporo, Japan
    • Related Report
      2011 Annual Research Report
  • [Presentation] Alleviation of nitric oxide sensitivity of Burkholderia multivorans ATCC 17616 fur mutant by additional mutation in oxyR gene2011

    • Author(s)
      Akane Kimura, et al
    • Organizer
      International Union of Microbiological Societies 2011 Congress
    • Place of Presentation
      Sapporo, Japan
    • Related Report
      2011 Annual Research Report
  • [Presentation] Structural analysis of plasmids for gamma-hexachlorocyclohexane degradation in Sphingomonas sp.MM-12011

    • Author(s)
      Michiro Tabata, et al
    • Organizer
      International Union of Microbiological Societies 2011 Congress
    • Place of Presentation
      Sapporo, Japan
    • Related Report
      2011 Annual Research Report
  • [Presentation] Development of a computational tool for finishing of draft genomic sequence2011

    • Author(s)
      Yoshiyuki Ohtsubo, et al
    • Organizer
      International Union of Microbiological Societies 2011 Congress
    • Place of Presentation
      Sapporo, Japan
    • Related Report
      2011 Annual Research Report
  • [Presentation] Direct isolation and characterization of genes for degradation of aromatic compounds from soils that were artificially contaminated with aromatic pollutants2011

    • Author(s)
      Hirofumi Nagayama, ら
    • Organizer
      International Forum for Ecosystem Adaptability Science III-Adaptability of Human Societies to Perturbation
    • Place of Presentation
      Sendai, Japan
    • Related Report
      2011 Annual Research Report
  • [Presentation] Genomic organization and its structural dynamism of Sphingobium japonicum UT26, an archetypal γ-hexachlorocyclohexane-degrading bacterium2011

    • Author(s)
      Nagata, Y., et al
    • Organizer
      "Indo-Swiss-Collaboration in Biotechnology" International Conference "Recent Trends in Developing Bioremediation Strategies for Hexaehlorocyclohexane (HCH) & Other Chlorinated Contaminants"
    • Place of Presentation
      Delhi, India
    • Related Report
      2010 Annual Research Report
  • [Presentation] Aerobic degradation of lindane (γ-hexachlorocyclohexane) in Sphingobium japonicum UT26 and its biochemical and molecular basis2011

    • Author(s)
      Nagata, Y., et al
    • Organizer
      "Indo-Swiss-Collaboration in Biotechnology" International Conference "Recent Trends in Developing Bioremediation Strategies for Hexachlorocyclohexane (HCH) & Other Chlorinated Contaminants"
    • Place of Presentation
      Delhi, India
    • Related Report
      2010 Annual Research Report
  • [Presentation] 有機塩素系殺虫剤gamma-HCH分解細菌Sphingobium japohicum UT26株内にて転移する挿入配列検出系の構築2011

    • Author(s)
      西岡ましほ, ら
    • Organizer
      第5回日本ゲノム微生物学会
    • Place of Presentation
      仙台・東北学院大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] 受容菌のリン酸基転移系によるIncP-9プラスミドNAH7の接合伝達制御機構2011

    • Author(s)
      井上慧, ら
    • Organizer
      第5回日本ゲノム微生物学会
    • Place of Presentation
      仙台・東北学院大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] Sphingobium sp.MI1205株由来の脱ハロゲン酵素LinB_MIのbeta-HCH分解活性に重要なアミノ酸残基の同定2011

    • Author(s)
      森内良太, ら
    • Organizer
      第5回日本ゲノム微生物学会
    • Place of Presentation
      仙台・東北学院大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] 機能ベースのメタゲノム的手法で取得した芳香族化合物代謝関連遺伝子群の解析2011

    • Author(s)
      菅原智詞, ら
    • Organizer
      第5回日本ゲノム微生物学会
    • Place of Presentation
      仙台・東北学院大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] 有機塩素系殺虫剤gamma-hexachlorocyclohexane分解細菌Sphingomonas sp.MM-1株が有する分解関連プラスミドの機能解析2011

    • Author(s)
      田端理朗, ら
    • Organizer
      第5回日本ゲノム微生物学会
    • Place of Presentation
      仙台・東北学院大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] 土壌細菌Burkholderia multivorans ATCC17616株の土壌環境中における特異的発現遺伝子の解析2011

    • Author(s)
      三浦那智, ら
    • Organizer
      第5回日本ゲノム微生物学会
    • Place of Presentation
      仙台・東北学院大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] 土壌細菌Burkholderia multivorans ATCC 17616株のFurとOxyRの遺伝学的関連とメカニズムの解明2011

    • Author(s)
      木村明音, ら
    • Organizer
      第5回日本ゲノム微生物学会
    • Place of Presentation
      仙台・東北学院大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] 土壌細菌Burkholderia multivorans ATCC 17616株の土壌環境下で生育に重要な遺伝子の探索・解析2011

    • Author(s)
      千本木淳子, ら
    • Organizer
      第5回日本ゲノム微生物学会
    • Place of Presentation
      仙台・東北学院大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] gamma-HCH分解細菌Sphingobium japonicum UT26株由来の有機炭素源非添加無機培地で生育する変異株の解析2011

    • Author(s)
      宇井博紀, ら
    • Organizer
      第5回日本ゲノム微生物学会
    • Place of Presentation
      仙台・東北学院大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] 液体集積培養系における有機塩素系殺虫剤gamma-hexachlorocyclohexane分解能を担う細菌株群に関する研究2011

    • Author(s)
      川角徹, ら
    • Organizer
      第5回日本ゲノム微生物学会
    • Place of Presentation
      仙台・東北学院大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] 芳香族化合物汚染により誘導される土壌遺伝子プールの変動解析2011

    • Author(s)
      加藤広海, ら
    • Organizer
      第5回日本ゲノム微生物学会
    • Place of Presentation
      仙台・東北学院大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] 土壌汚染により優先したBurkholderia群集の系統と代謝能力の遷移2011

    • Author(s)
      熊野知拡, ら
    • Organizer
      第5回日本ゲノム微生物学会
    • Place of Presentation
      仙台・東北学院大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] 微生物ゲノム完全長決定支援ソフトウエア454Finisher(仮)2011

    • Author(s)
      大坪嘉行, ら
    • Organizer
      第5回日本ゲノム微生物学会
    • Place of Presentation
      仙台・東北学院大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] Acidovorax sp.KKS102におけるカタボライト抑制メカニズムの研究2011

    • Author(s)
      小沼かおり, ら
    • Organizer
      第5回日本ゲノム微生物学会
    • Place of Presentation
      仙台・東北学院大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] ドラフトゲノム配列のFinishing支援ツール:454Finisher2011

    • Author(s)
      大坪嘉行, ら
    • Organizer
      日本農芸化学会2011年度大会
    • Place of Presentation
      京都・京都女子大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] Sphingobium sp.MI1205株由来のハロアルカンデハロゲナーゼLinB_MIのbeta-HCH分解活性に重要なアミノ酸残基の同定2011

    • Author(s)
      森内良太, ら
    • Organizer
      日本農芸化学会2011年度大会
    • Place of Presentation
      京都・京都女子大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] Sphingomonas sp.MM-1株が有する有機塩素系殺虫剤gamma-hexachloro cyclohexane分解関連プラスミドの構造解析2011

    • Author(s)
      田端理朗, ら
    • Organizer
      日本農芸化学会2011年度大会
    • Place of Presentation
      京都・京都女子大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] 有機塩素系殺虫剤gamma-HCH分解細菌Sphingobium japonicum UT26株内で転移する挿入配列検出系の構築2011

    • Author(s)
      西岡ましほ, ら
    • Organizer
      日本農芸化学会2011年度大会
    • Place of Presentation
      京都・京都女子大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] 有機塩素系殺虫剤gamma-hexachlorocyclohexane分解細菌の有機炭素源非添加無機培地での生育に関する研究2011

    • Author(s)
      宇井博紀, ら
    • Organizer
      日本農芸化学会2011年度大会
    • Place of Presentation
      京都・京都女子大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] 有機塩素系殺虫剤γ?hexachlorocyclohexane (HCH)分解機能を担う集積培養細菌叢に関する研究2011

    • Author(s)
      川角徹, ら
    • Organizer
      日本農芸化学会2011年度大会
    • Place of Presentation
      京都・京都女子大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] Burkholderia multivorans ATCC 17616株の鉄応答転写因子Furと過酸化水素応答転写因子OxyRの遺伝学的関連性の解明2011

    • Author(s)
      木村明音, ら
    • Organizer
      日本農芸化学会2011年度大会
    • Place of Presentation
      京都・京都女子大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] 土壌細菌Burkholderia multivorans ATCC17616株の土壌環境下で生育に重要な遺伝子の同定2011

    • Author(s)
      千本木淳子, ら
    • Organizer
      日本農芸化学会2011年度大会
    • Place of Presentation
      京都・京都女子大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] 土壌細菌Burkholderia multivorans ATCC17616株の土壌特異的発現遺伝子の解析2011

    • Author(s)
      三浦那智, ら
    • Organizer
      日本農芸化学会2011年度大会
    • Place of Presentation
      京都・京都女子大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] 土壌の汚染化によって起こる微生物遺伝子プールの変動2011

    • Author(s)
      加藤広海, ら
    • Organizer
      日本農芸化学会2011年度大会
    • Place of Presentation
      京都・京都女子大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] 土壌汚染によって優先したBurkholderia群集の系統および代謝能力の遷移2011

    • Author(s)
      熊野知拡, ら
    • Organizer
      日本農芸化学会2011年度大会
    • Place of Presentation
      京都・京都女子大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] 培養非依存的手法で取得した芳香族化合物代謝関連遺伝子群の解析2011

    • Author(s)
      菅原智詞, ら
    • Organizer
      日本農芸化学会2011年度大会
    • Place of Presentation
      京都・京都女子大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] ナフタレン分解プラスミドNAH7の接合伝達に関与するプラスミド因子ど受容菌因子の解析2011

    • Author(s)
      井上慧, ら
    • Organizer
      日本農芸化学会2011年度大会
    • Place of Presentation
      京都・京都女子大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] Genetic interaction of global transcriptional regulators, Fur and OxyR, in Burkholderia multivorans2010

    • Author(s)
      Kimura, A., et al
    • Organizer
      International Forum for Adaptability Science II : Technologies for a Sustainable Society
    • Place of Presentation
      Sendai, Japan
    • Year and Date
      2010-12-03
    • Related Report
      2010 Annual Research Report
  • [Presentation] 微生物遺伝子資源の活用技術2010

    • Author(s)
      永田裕二, ら
    • Organizer
      東北大学-産総研連携公開講演会
    • Place of Presentation
      東京・アキバホール
    • Year and Date
      2010-07-28
    • Related Report
      2010 Annual Research Report
  • [Presentation] 土壌汚染に対する微生物遺伝子プールの変動解析2010

    • Author(s)
      津田雅孝, ら
    • Organizer
      環境バイオテクノロジー学会2010年度大会シンポジウム
    • Place of Presentation
      仙台・東北大学
    • Year and Date
      2010-06-22
    • Related Report
      2010 Annual Research Report
  • [Presentation] Organization and dynamism of gamma-hexachlorocyclohexane-degrading bacterium Sphingobium japonicum UT26 genome2010

    • Author(s)
      Y. Nagata, S. Natsui, Y. Ohtsubo, N. Ichikawa, A. Ankai, A. Oguchi, N. Fujita, and M. Tsuda
    • Organizer
      14th International Biotechnology Symposium and Exhibition Biotechnology for the Sustainability ofHuman Society
    • Place of Presentation
      Rimini, Italy. (口頭発表)
    • Related Report
      2012 Final Research Report
  • [Presentation] ハロアルカン脱ハロゲン酵素DbjA特有のループによるエナンチオ選択性機構の解明2010

    • Author(s)
      佐藤優花里, ら
    • Organizer
      第10回日本蛋白質科学会年会
    • Place of Presentation
      札幌・札幌コンベンションセンター
    • Related Report
      2010 Annual Research Report
  • [Presentation] 第二世代シークエンサを用いた、土壌汚染に伴う微生物の適応反応の解析2010

    • Author(s)
      加藤広海, ら
    • Organizer
      環境バイオテクノロジー学会2010年度大会
    • Place of Presentation
      仙台・東北大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] Burkholderia multivorans ATCC 17616株の土壌特異的発現遺伝子の同定と解析2010

    • Author(s)
      西山依里, ら
    • Organizer
      環境バイオテクノロジー学会2010年度大会
    • Place of Presentation
      仙台・東北大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] 有機塩素系殺虫剤γ-hexachlorocyclohexane(γ-HCH)分解細菌Sphingomonas sp.MM-1株が有するγ-HCH分解関連プラスミドの解析2010

    • Author(s)
      田端理朗, ら
    • Organizer
      環境バイオテクノロジー学会2010年度大会
    • Place of Presentation
      仙台・東北大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] 受容菌のリン酸基転移系によるナフタレン分解プラスミドNAH7の接合伝達の制御機構の解析2010

    • Author(s)
      井上慧, ら
    • Organizer
      環境バイオテクノロジー学会2010年度大会
    • Place of Presentation
      仙台・東北大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] 土壌細菌Burkholderia multivoransにおける鉄応答転写因子と過酸化水素応答転写因子の関連2010

    • Author(s)
      木村明音, ら
    • Organizer
      環境バイオテクノロジー学会2010年度大会
    • Place of Presentation
      仙台・東北大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] メタゲノムアプローチにより多重汚染土壌から取得した芳香族化合物初発酸化酵素遺伝子の解析2010

    • Author(s)
      菅原智詞, ら
    • Organizer
      環境バイオテクノロジー学会2010年度大会
    • Place of Presentation
      仙台・東北大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] 有機塩素系殺虫剤γ-HCH分解細菌Sphingobium japonicum UT26株における挿入配列IS6100を介したゲノムの動態2010

    • Author(s)
      夏井俊介, ら
    • Organizer
      環境バイオテクノロジー学会2010年度大会
    • Place of Presentation
      仙台・東北大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] Hexachlorocyclohexane (HCH)異性体汚染土壌由来の有機塩素系殺虫剤γ-HCH分解細菌叢の解析2010

    • Author(s)
      川角徹, ら
    • Organizer
      環境バイオテクノロジー学会2010年度大会
    • Place of Presentation
      仙台・東北大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] STM法による土壌細菌Burkholderia multivorans ATCC 17616株の土壌環境下で生育に重要な遺伝子の探索2010

    • Author(s)
      千本木淳子, ら
    • Organizer
      環境バイオテクノロジー学会2010年度大会
    • Place of Presentation
      仙台・東北大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] 解析ソフトウエアGenomeMatcherのドラフトゲノムシーケンスのコンプリート支援機能2010

    • Author(s)
      大坪嘉行, ら
    • Organizer
      環境バイオテクノロジー学会2010年度大会
    • Place of Presentation
      仙台・東北大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] 芳香族化合物分解系プラスミドの安定的維持を阻害する宿主因子2010

    • Author(s)
      宮腰昌利, ら
    • Organizer
      環境バイオテクノロジー学会2010年度大会
    • Place of Presentation
      仙台・東北大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] Fluctuation of gene pools of soil microbiota induced by contamination with aromatic hydrocarbons2010

    • Author(s)
      Kato, H., et al
    • Organizer
      13th International Society for Microbial Ecology Conference
    • Place of Presentation
      Seattle, USA
    • Related Report
      2010 Annual Research Report
  • [Presentation] Organization and dynamism of gamma-hexachlorocyclohexane-degrading bacterium Sphingobium japonicum UT26 genome2010

    • Author(s)
      Nagata, Y., et al
    • Organizer
      14th International Biotechnology Symposium and Exhibition Biotechnology for the Sustainability of Human Society
    • Place of Presentation
      Rimini, Italy
    • Related Report
      2010 Annual Research Report
  • [Presentation] Genetic interaction of global transcriptional regulators, Fur and OxyR, in Burkholderia multivorans2010

    • Author(s)
      Kimura, A., et al
    • Organizer
      14th International Biotechnology Symposium and Exhibition Biotechnology for the Sustainability of Human Society
    • Place of Presentation
      Rimini, Italy
    • Related Report
      2010 Annual Research Report
  • [Presentation] PCB/biphenyl degradation operon repressed by different compounds in Acidovorax sp.KKS102 and Burkholderia multivorans ATCC 176162010

    • Author(s)
      Ohtsubo, Y., et al
    • Organizer
      14th International Biotechnology Symposium and Exhibition Biotechnology for the Sustainability of Human Society
    • Place of Presentation
      Rimini, Italy
    • Related Report
      2010 Annual Research Report
  • [Presentation] Conjugative transfer of naphthalene-catabolic plasmid NAH7 regulated by nitrogen-related phosphotransferase system of recipient cells2010

    • Author(s)
      Inoue, K., et al
    • Organizer
      14th International Biotechnology Symposium and Exhibition Biotechnology for the Sustainability of Human Society
    • Place of Presentation
      Rimini, Italy
    • Related Report
      2010 Annual Research Report
  • [Presentation] 芳香族化合物汚染により誘導される土壌メタゲノムの変動様式とそのメカニズム2010

    • Author(s)
      加藤広海, ら
    • Organizer
      第26回日本微生物生態学会
    • Place of Presentation
      つくば・筑波大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] Gamma-HCH分解細菌Sphingobium japonicum UT26株由来の極貧炭素源条件下で生育する変異株の解析2010

    • Author(s)
      宇井博紀, ら
    • Organizer
      第26回日本微生物生態学会
    • Place of Presentation
      つくば・筑波大学
    • Related Report
      2010 Annual Research Report
  • [Presentation] ハロアルカン脱ハロゲン酵素DbjAの鏡像異性体選択性機構の解明2010

    • Author(s)
      佐藤優花里, ら
    • Organizer
      第33回日本分子生物学会年会・第83回日本生化学会大会合同大会
    • Place of Presentation
      神戸・神戸ポートアイランド
    • Related Report
      2010 Annual Research Report
  • [Book] 「酵素利用技術体系」(部分執筆pp939-948:「脱ハロゲン酵素」)2010

    • Author(s)
      永田裕二、津田雅孝
    • Publisher
      エヌ・ティー・エス
    • Related Report
      2010 Annual Research Report
  • [Book] 「難培養性微生物研究の最新技術II」(部分執筆pp211-219:「環境汚染物質分解細菌のメタゲノミクス」)2010

    • Author(s)
      永田裕二、津田雅孝
    • Publisher
      シーエムシー出版
    • Related Report
      2010 Annual Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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