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Function and regulation of D-amino acid biosystem in eukaryote

Research Project

Project/Area Number 22380058
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied biochemistry
Research InstitutionNagoya University

Principal Investigator

YOSHIMURA Tohru  名古屋大学, 生命農学研究科, 教授 (70182821)

Co-Investigator(Kenkyū-buntansha) HEMMI Hisashi  名古屋大学, 大学院・生命農学研究科, 准教授 (60302189)
Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥17,810,000 (Direct Cost: ¥13,700,000、Indirect Cost: ¥4,110,000)
Fiscal Year 2012: ¥4,420,000 (Direct Cost: ¥3,400,000、Indirect Cost: ¥1,020,000)
Fiscal Year 2011: ¥4,030,000 (Direct Cost: ¥3,100,000、Indirect Cost: ¥930,000)
Fiscal Year 2010: ¥9,360,000 (Direct Cost: ¥7,200,000、Indirect Cost: ¥2,160,000)
KeywordsD-アミノ酸 / D-セリン / D-アスパラギン酸 / Dictyostelium discoidium / D-セリンデヒドラターゼ / セリンラセマーゼ / D-セリン / アスパラギン酸ラセマーゼ / D-セリンデヒドラターゼ / 細胞性粘菌 / ピリドキサルリン酸 / ALS / D-Ser / D-セリンデヒドロターゼ
Research Abstract

In these studies, we examined the role of zinc in the D-serine dehydratase of Saccharomycescerevisiae. We also studied the reaction mechanism of serine racemase of a slime cellularmold, Dictyostelium discoidium, and found that the enzyme reaction proceeds through thetwo-base mechanism with Lys56 and Ser81. In order to clarify the role of D-aspartatein mammals, we cloned the gene of mouse GOT1L1, which was suggested to be an asparateracemase, and attempted to purify the protein. We also studied the D-serine metabolismin D. discoidium to understand the role of D-serine in development. We constructed themutant D. discoidium cells lacking D-serine dehydratase, which is responsible for theD-serine degradation. The mutant cells contained D-serine at their multicellular stageand showed the defects in fruiting body formation. We also constructed the polyethyleneglycol-modified D-serine dehydratase, which can be a tool for the in vivo D-serinedegradation. The modified enzyme exhibited a decreased immunogenicity.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (44 results)

All 2013 2012 2011 2010

All Journal Article (12 results) (of which Peer Reviewed: 10 results) Presentation (31 results) (of which Invited: 4 results) Patent(Industrial Property Rights) (1 results)

  • [Journal Article] Catalyticmechanism of serine racemase fromDictyostelium discoideum.2013

    • Author(s)
      Ito T, Maekawa M, Hayashi S, Goto M,Hemmi H, Yoshimura T
    • Journal Title

      Amino Acids

      Volume: 44 Issue: 3 Pages: 1073-1084

    • DOI

      10.1007/s00726-012-1442-4

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Role of Zinc Ion for CatalyticActivity in D-Serine Dehydratase fromSaccharomyces cerevisiae2013

    • Author(s)
      Ito T, Koga K, Hemmi H, YoshimuraT.
    • Journal Title

      FEBS Journal

      Volume: 279 Issue: 4 Pages: 612-624

    • DOI

      10.1111/j.1742-4658.2011.08451.x

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Metal ion dependency ofserine racemase from Dictyosteliumdiscoideum2012

    • Author(s)
      Ito T, Murase H, Maekawa M, Goto M,Hayashi S, Saito H, Maki M, Hemmi H,Yoshimura T
    • Journal Title

      Amino acids

      Volume: 879 Pages: 3190-3195

    • URL

      http://link.springer.com/article/10.1007%2Fs00726-012-1232-z

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Lysine racemase from a lactic acid bacterium, Oenococcus oeni: Structuralbasis of substrate specificity2012

    • Author(s)
      Kato S, Hemmi H, Yoshimura T
    • Journal Title

      J. Biochem.

      Volume: 152 Pages: 505-508

    • URL

      http://jb.oxfordjournals.org/content/152/6/505.long

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Simultaneous determination ofD-amino acids by the coupling method ofD-amino acid oxidase withhigh-performance liquid chromatography2012

    • Author(s)
      Kato S, Kito Y, Hemmi H, Yoshimura T
    • Journal Title

      J.Chromat

      Volume: B 879 Issue: 29 Pages: 3190-3195

    • DOI

      10.1016/j.jchromb.2010.12.005

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Enzymatic assay for D-aspartic acid using D-aspartate oxidase and oxaloacetate decarboxylase.2012

    • Author(s)
      Kato S, Ikuta T, Hemmi H, Takahashi S, Kera Y, Yoshimura T.
    • Journal Title

      Biosci. Biotechnol. Biochem.

      Volume: 76 Pages: 2150-2152

    • NAID

      10031126525

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Lysine racemase from a lactic acid bacterium, Oenococcus oeni: structural basis of substrate specificity.2012

    • Author(s)
      Kato S, Hemmi H, Yoshimura T.
    • Journal Title

      J Biochem.

      Volume: 152 Issue: 6 Pages: 505-508

    • DOI

      10.1093/jb/mvs120

    • NAID

      10031166168

    • Related Report
      2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Metal ion dependency of serine racemase from Dictyostelium discoideum2012

    • Author(s)
      Ito T, Murase H, Maekawa M, Goto M, Hayashi S, Saito H, Maki M, Hemmi H, Yoshimura T
    • Journal Title

      Amino Acids

      Volume: (印刷中) Issue: 4 Pages: 1567-1576

    • DOI

      10.1007/s00726-012-1232-z

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 哺乳類のアスパラギン酸ラセマーゼ2011

    • Author(s)
      伊藤智和、吉村徹
    • Journal Title

      ビタミン

      Volume: 85 Pages: 661-665

    • Related Report
      2011 Annual Research Report
  • [Journal Article] Alteration in D-amino acid concentrations and microbial community structures during the fermentation of red and white wines2011

    • Author(s)
      Shiro Kato, Tatsuya Ishihara, Hisashi Hemmi, Hironori Kobayashi, Tohru Yoshimura
    • Journal Title

      Journal of Bioscience and Bioengineering

      Volume: 111 Pages: 104-108

    • NAID

      110008440358

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] サプリメントとしてのD-アスパラギン酸2011

    • Author(s)
      加藤志郎、吉村徹
    • Journal Title

      ビタミン

      Volume: 85 Pages: 29-30

    • NAID

      110008440796

    • Related Report
      2010 Annual Research Report
  • [Journal Article] A highly sensitive enzymatic assay for D- and total serine detection using D-serine dehydratase from Saccharomyces cerevisiae2010

    • Author(s)
      Tomoko Naka, Tomokazu Ito, Hisashi Hemmi, Tohru Yoshimura
    • Journal Title

      Journal of Molecular Catalysis B : Enzymatic

      Volume: 67 Pages: 150-154

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] D-アミノ酸の機能とバイオマーカーとしての可能性2013

    • Author(s)
      吉村 徹、伊藤智和
    • Organizer
      第3回予防早期医療創成センター ワークショップ
    • Place of Presentation
      名古屋大学
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] D-アミノ酸代謝関連酵素を用いたD-アミノ酸の定量と機能性評価2012

    • Author(s)
      吉村 徹, 加藤 志郎, 伊藤 智和, 邊見久
    • Organizer
      第64回日本生物工学会シンポジウム
    • Place of Presentation
      神戸
    • Year and Date
      2012-10-24
    • Related Report
      2012 Final Research Report
  • [Presentation] D-Amino acid as a novelbiofactor2012

    • Author(s)
      Yoshimura T
    • Organizer
      103rd AOCS Annual meeting &Expo
    • Place of Presentation
      Long Beach (USA)
    • Year and Date
      2012-05-01
    • Related Report
      2012 Final Research Report
  • [Presentation] D-アミノ酸研究の展開と展望:分布、機能、代謝、食品・医薬への応用へ2012

    • Author(s)
      吉村 徹
    • Organizer
      日本農芸化学会2012年度大会ランチョンセミナー
    • Place of Presentation
      京都
    • Year and Date
      2012-03-25
    • Related Report
      2012 Final Research Report
  • [Presentation] D-アスパラギン酸酵素定量法の開発2012

    • Author(s)
      生田智之、加藤志郎、邊見久、吉村徹
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都女子大学
    • Year and Date
      2012-03-23
    • Related Report
      2011 Annual Research Report
  • [Presentation] Oenococcus oeniリジンラセマーゼの基質特異性に関する研究2012

    • Author(s)
      加藤志郎、邊見久、吉村徹
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都女子大学
    • Year and Date
      2012-03-23
    • Related Report
      2011 Annual Research Report
  • [Presentation] D-Amino acid as a novel biofactor2012

    • Author(s)
      Yoshimura Tohru
    • Organizer
      103rd AOCS Annual meeting & Expo
    • Place of Presentation
      Long Beach Convention Center, USA
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] D-アミノ酸代謝関連酵素を用いたD-アミノ酸の定量と機能性評価2012

    • Author(s)
      吉村 徹, 加藤 志郎, 伊藤 智和, 邊見 久
    • Organizer
      第64回日本生物工学会大会シンポジウム
    • Place of Presentation
      神戸国際会議場
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] Dictyostelium discoideumにおけるD-セリンの生理的役割2012

    • Author(s)
      吉村 徹
    • Organizer
      第2回日本細胞性粘菌学会
    • Place of Presentation
      東京大学
    • Related Report
      2012 Annual Research Report
    • Invited
  • [Presentation] D-セリン定量キットの開発とヒト尿中D-セリン動態の解析2012

    • Author(s)
      高田紘江、石塚早記、伊藤智和、邊見久、柴田克己、吉村徹
    • Organizer
      第8回D-アミノ酸研究会学術講演会
    • Place of Presentation
      滋賀医科大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] Schizosaccharomyces pombe由来D-アミノ酸オキシダーゼ2012

    • Author(s)
      加藤志郎、鬼頭幸彦、安田尚正、邊見久、吉村徹
    • Organizer
      第8回D-アミノ酸研究会学術講演会
    • Place of Presentation
      滋賀医科大学
    • Related Report
      2012 Annual Research Report
  • [Presentation] D-アミノ酸研究の展開と展望:分布、機能、代謝、食品・医薬への応用へ2011

    • Author(s)
      吉村徹
    • Organizer
      日本農芸化学会2012年度大会ランチョンセミナー
    • Place of Presentation
      京都女子大学(招待講演)
    • Year and Date
      2011-09-25
    • Related Report
      2011 Annual Research Report
  • [Presentation] 真核生物のD-アミノ酸代謝関連酵素2011

    • Author(s)
      吉村 徹
    • Organizer
      第84回日本生化学会大会シンポジウム
    • Place of Presentation
      京都
    • Year and Date
      2011-09-24
    • Related Report
      2012 Final Research Report
  • [Presentation] 真核生物のD-アミノ酸代謝関連酵素2011

    • Author(s)
      吉村徹
    • Organizer
      第84回日本生化学会大会シンポジウム
    • Place of Presentation
      京都国際会議場(招待講演)
    • Year and Date
      2011-09-24
    • Related Report
      2011 Annual Research Report
  • [Presentation] ワイン乳酸菌Oenococcus oeni由来ラセマーゼの解析2011

    • Author(s)
      加藤志郎、邊見久、吉村徹
    • Organizer
      第84回日本生化学会大会
    • Place of Presentation
      京都国際会議場
    • Year and Date
      2011-09-23
    • Related Report
      2011 Annual Research Report
  • [Presentation] 細胞性粘菌におけるD-セリンの生理的役割の解明2011

    • Author(s)
      萩泰典、伊藤智和、齊藤玉緒、邊見久、吉村徹
    • Organizer
      第84回日本生化学会大会
    • Place of Presentation
      京都国際会議場
    • Year and Date
      2011-09-23
    • Related Report
      2011 Annual Research Report
  • [Presentation] 細胞性粘菌におけるD-セリン代謝関連酵素とその生理機能2011

    • Author(s)
      萩泰典、伊藤智和、齊藤玉緒、邊見久、吉村徹
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都女子大学
    • Year and Date
      2011-09-23
    • Related Report
      2011 Annual Research Report
  • [Presentation] Analysis of D-amino acids production from lactic acid bacteria during fermentation of red and white wines2011

    • Author(s)
      Shiro Kato, Tatsuya Ishihara, Hironori Kobayashi, Maki Kawahara, Hisashi Hemmi, Tohru Yoshimura
    • Organizer
      International Union Microbiological Societies Sapporo 2011
    • Place of Presentation
      札幌市
    • Year and Date
      2011-09-10
    • Related Report
      2011 Annual Research Report
  • [Presentation] Lactobacillus属乳酸菌におけるD-アスパラギン酸代謝2011

    • Author(s)
      田上一輝、加藤志郎、邊見久、吉村徹
    • Organizer
      第7回D-アミノ酸研究会学術講演会
    • Place of Presentation
      東京医科歯科大学
    • Year and Date
      2011-09-09
    • Related Report
      2011 Annual Research Report
  • [Presentation] PEG化D-セリンデヒドラーゼの調製と物性の解析2011

    • Author(s)
      高田紘江、磯部恵子、伊藤智和、邊見久、吉村徹
    • Organizer
      第7回D-アミノ酸研究会学術講演会
    • Place of Presentation
      東京医科歯科大学
    • Year and Date
      2011-09-09
    • Related Report
      2011 Annual Research Report
  • [Presentation] GabR, a pyridoxal 5'-phosphate-dependent transcriptional regulator of Bacillus subtilis2011

    • Author(s)
      Tohru Yoshimura
    • Organizer
      The Third International Conference on Cofactors 03
    • Place of Presentation
      Finland,Turk(招待講演)
    • Year and Date
      2011-07-12
    • Related Report
      2011 Annual Research Report
  • [Presentation] ワイン乳酸菌Oenococcus oeni由来リジンラセマーゼの解析2011

    • Author(s)
      加藤志郎、川原麻季、邊見久、吉村徹
    • Organizer
      日本農芸化学会2011年度大会
    • Place of Presentation
      (要旨集)
    • Year and Date
      2011-03-26
    • Related Report
      2010 Annual Research Report
  • [Presentation] 真核細胞型D-セリンデヒドラターゼ:神経疾患解析への応用2011

    • Author(s)
      高田紘江、磯部恵子、伊藤智和、邊見久、吉村徹
    • Organizer
      日本農芸化学会2011年度大会
    • Place of Presentation
      (要旨集)
    • Year and Date
      2011-03-26
    • Related Report
      2010 Annual Research Report
  • [Presentation] ピリドキサールリン酸に依存する細菌の転写制御因子、GabR2011

    • Author(s)
      白木俊介、奥田啓太、深田はるみ、後藤勝、邊見久、吉村徹
    • Organizer
      日本農芸化学会2011年度大会
    • Place of Presentation
      (要旨集)
    • Year and Date
      2011-03-26
    • Related Report
      2010 Annual Research Report
  • [Presentation] 真核生物型D-セリンデヒドラーゼにおける亜鉛の意義2011

    • Author(s)
      伊藤智和、邊見久、吉村徹
    • Organizer
      日本農芸化学会2011年度大会
    • Place of Presentation
      (要旨集)
    • Year and Date
      2011-03-26
    • Related Report
      2010 Annual Research Report
  • [Presentation] Eukaryotic D-serinedehydratase and its application toD-serine assay2010

    • Author(s)
      Tohru Yoshimura
    • Organizer
      The 65th West LakeInternational Symposium of ZhejianUniversity
    • Place of Presentation
      Zhejian(China)
    • Year and Date
      2010-11-20
    • Related Report
      2012 Final Research Report
  • [Presentation] Eukaryotic D-serine dehydratase and its application to D-serine assay2010

    • Author(s)
      Tohru Yoshimura
    • Organizer
      The 65th West Lake International Symposium of Zhejian University
    • Place of Presentation
      Zhejian University(中国)(招待講演)
    • Year and Date
      2010-11-20
    • Related Report
      2010 Annual Research Report
  • [Presentation] 微生物酵素によるD-アミノ酸の定量2010

    • Author(s)
      吉村徹
    • Organizer
      第62回日本生物工学会大会
    • Place of Presentation
      宮崎シーガイア(招待講演)
    • Year and Date
      2010-10-29
    • Related Report
      2010 Annual Research Report
  • [Presentation] 真核細胞型D-セリンデヒドラターゼ:酵素学的特性とD-セリン酵素定量法への応用2010

    • Author(s)
      吉村徹
    • Organizer
      平成22年度日本農芸化学会中四国支部大会シンポジウム
    • Place of Presentation
      香川大学(招待講演)
    • Year and Date
      2010-09-24
    • Related Report
      2010 Annual Research Report
  • [Presentation] ワイン発酵過程における菌叢とD-アミノ酸の動態2010

    • Author(s)
      加藤志郎、石原達也、川原麻紀、邊見久、吉村徹
    • Organizer
      第6回D-アミノ酸研究会学術講演会
    • Place of Presentation
      富山国際会議場
    • Year and Date
      2010-09-17
    • Related Report
      2010 Annual Research Report
  • [Presentation] ヨーグルトにおけるD-アミノ酸と菌叢2010

    • Author(s)
      田上一輝、加藤志郎、邊見久、吉村徹
    • Organizer
      第6回D-アミノ酸研究会学術講演会
    • Place of Presentation
      富山国際会議場
    • Year and Date
      2010-09-17
    • Related Report
      2010 Annual Research Report
  • [Patent(Industrial Property Rights)] 非タンパク性アミノ酸生産乳酸菌およびその用途2012

    • Inventor(s)
      吉村徹、加藤志郎
    • Industrial Property Rights Holder
      国立大学法人名古屋大学
    • Industrial Property Number
      2012-033583
    • Filing Date
      2012-02-20
    • Related Report
      2011 Annual Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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