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General principle and importance of organization of chromosome structures during mammalian development and cell differentiation

Research Project

Project/Area Number 22380188
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied molecular and cellular biology
Research InstitutionMie University

Principal Investigator

OKUMURA Katsuzumi  三重大学, 大学院・生物資源学研究科, 教授 (30177183)

Co-Investigator(Renkei-kenkyūsha) SUGIMURA Kazuto  三重大学, 大学院・医学系研究科, 助教 (90452226)
Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥17,810,000 (Direct Cost: ¥13,700,000、Indirect Cost: ¥4,110,000)
Fiscal Year 2012: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Fiscal Year 2011: ¥5,590,000 (Direct Cost: ¥4,300,000、Indirect Cost: ¥1,290,000)
Fiscal Year 2010: ¥6,890,000 (Direct Cost: ¥5,300,000、Indirect Cost: ¥1,590,000)
Keywords染色体 / ゲノム / 複製フォーク / クロマチン / エピジェネティクス / DNAメチル化 / DNA損傷 / クロマチン構造 / DNA複製 / DNAのメチル化 / 5-aza-2'-deoxycytidine
Research Abstract

In mammals, DNA methylation is an important epigenetic mark that is associated with chromosome construction. Using a DNA methylation inhibitor, we found that reduced levels of DNA methylation were associated with the activation of transcription from centromere regionsand a shift in replication timing of the pericenromeric regions from middle/late S to early S phase through depositing histone H3.3 on pericenromeric heterochromatin prior to the accumulation of the euchromatic histone modification, suggesting that DNA methylation is essential for proper organization of pericentromeric heterochromatin in differentiated mouse cells. We also found that DNA methyltransferase 1 knockdown or inhibition causes replication fork stalling and replication-associated DNA damages. We propose that replication stress in the course of passive DNA demethylation could be a source of spontaneous mutations and genomic instability during tumorigenesis and aging.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (31 results)

All 2012 2011 2010 Other

All Journal Article (9 results) (of which Peer Reviewed: 6 results) Presentation (22 results) (of which Invited: 1 results)

  • [Journal Article] 染色体複製と高次エピゲノム2012

    • Author(s)
      奥村克純
    • Journal Title

      細胞工学

      Volume: 31(8) Pages: 909-916

    • URL

      https://mol.medicalonline.jp/archive/search?jo=ab6saikb&vo=31&nu=8

    • Related Report
      2012 Annual Research Report 2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Identification of Damaged DNA Regions Induced by Decreased DNA Methylation Levels ~DNA Methylation Defects might Induce Lifestyle Diseases or Genetic Diseases~2012

    • Author(s)
      Takeshi Yoshimura
    • Journal Title

      Proceeding of The Fourth International Workshop on Regional Innovation Studies

      Volume: 4 Pages: 20-22

    • Related Report
      2012 Annual Research Report
  • [Journal Article] 核内ゲノムダイナミクスの可視化: 細胞核-構造と機能2011

    • Author(s)
      奥村克純
    • Journal Title

      生体の科学

      Volume: 62(5) Pages: 500-501

    • URL

      http://ej.islib.jp/ejournal/2425101228.html

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] 核マトリックスとゲノムダイナミクス: 細胞核-構造と機能2011

    • Author(s)
      奥村克純
    • Journal Title

      生体の科学

      Volume: 62(5) Pages: 400-401

    • URL

      http://ej.islib.jp/ejournal/2425101185.html

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] The histone chaperone FACT maintains replication fork rates2011

    • Author(s)
      T.Abe, K.Sugimura, Y.Hosono, Y.Takami, M.Akita, A.Yoshimura, S.Tada, T.Nakayama, H.Murofushi, K.Okumura, S.Takeda, M.Horikoshi, M.Seki & T.Enomoto
    • Journal Title

      J.Biol.Chem.

      Volume: 286 Issue: 35 Pages: 30504-30512

    • DOI

      10.1074/jbc.m111.264721

    • Related Report
      2012 Final Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] 核マトリックスとゲノムダイナミクス2011

    • Author(s)
      奥村 克純
    • Journal Title

      生体の科学

      Volume: 62 Pages: 400-401

    • Related Report
      2011 Annual Research Report
  • [Journal Article] 核内ゲノムダイナミクスの可視化2011

    • Author(s)
      奥村 克純
    • Journal Title

      生体の科学

      Volume: 62 Pages: 500-501

    • Related Report
      2011 Annual Research Report
  • [Journal Article] Cell cycle-dependent accumulation of histone H3.3 and euchromatic histone modifications in pericentromeric heterochromatin in response to a decrease in DNA methylation levels2010

    • Author(s)
      K. Sugimura, Y. Fukushima,M. Ishida, S. Ito, M. Nakamura, Y. Mori, K. Okumura
    • Journal Title

      Exp. Cell Res

      Volume: 316(17) Issue: 17 Pages: 2731-2746

    • DOI

      10.1016/j.yexcr.2010.06.016

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Cell cycle-dependent accumulation of histone H3.3 and euchromatic histone modifications in pericentromeric heterochromatin in response to a decrease in DNA methylation levels2010

    • Author(s)
      Kazuto Sugimura
    • Journal Title

      Experimental Cell Research

      Volume: 316 Pages: 2731-2746

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] DNAメチル化レベル低下によりDNA損傷が誘導されるゲノム領域の同定2012

    • Author(s)
      吉村健,奥村克純
    • Organizer
      日本分子生物学会第35回年会
    • Place of Presentation
      福岡国際会議場 福岡市
    • Related Report
      2012 Final Research Report
  • [Presentation] Identification of Damaged DNA Regions Induced by Decreased DNA Methylation Levels ~DNA Methylation Defects might Induce Lifestyle Diseases or Genetic Diseases~2012

    • Author(s)
      T. Yoshimura and K. Okumura
    • Organizer
      The Fourth International Workshop on Regional Innovation Studies (IWRIS2012)
    • Place of Presentation
      Tsu, Japan
    • Related Report
      2012 Final Research Report
  • [Presentation] UHRF1は受動的DNA脱メチル化後のDNA損傷誘導に関与する2012

    • Author(s)
      杉村和人,杉浦健太,来馬啓介,緒方正人,奥村克純
    • Organizer
      第6回日本エピジェネティクス研究会年会
    • Place of Presentation
      東京一ツ橋学術総合センター 東京都
    • Related Report
      2012 Final Research Report
  • [Presentation] UHRF1は受動的DNA脱メチル化後のDNA損傷誘導に関与する2012

    • Author(s)
      杉村 和人
    • Organizer
      第6回日本エピジェネティクス研究会年会
    • Place of Presentation
      東京都
    • Related Report
      2012 Annual Research Report
  • [Presentation] DNAメチル化レベル低下によりDNA損傷が誘導されるゲノム領域の同定2012

    • Author(s)
      吉村 健
    • Organizer
      第6回日本エピジェネティクス研究会年会
    • Place of Presentation
      東京都
    • Related Report
      2012 Annual Research Report
  • [Presentation] DNAメチル化レベル低下によりDNA損傷が誘導されるゲノム領域の同定2012

    • Author(s)
      吉村 健
    • Organizer
      日本分子生物学会第35回年会
    • Place of Presentation
      福岡市
    • Related Report
      2012 Annual Research Report
  • [Presentation] DNAメチル化レベル低下によりDNA損傷が誘導されるゲノム領域の同定2012

    • Author(s)
      吉村 健
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都市
    • Related Report
      2011 Annual Research Report
  • [Presentation] UHRF1は受動的DNA脱メチル化後のDNA損傷誘導に関与する2012

    • Author(s)
      杉村 和人
    • Organizer
      日本農芸化学会2012年度大会
    • Place of Presentation
      京都市
    • Related Report
      2011 Annual Research Report
  • [Presentation] UHRF1 is involved in DNA damage induction after passive DNA demethylation2011

    • Author(s)
      K. Sugimura, K. Sugiura, H. Nakabayashi, K. Kuruma, M. Ogata, K. Okumura
    • Organizer
      The 63rd Annual Meeting of the Japan Society for Cell Biology
    • Place of Presentation
      Sapporo
    • Related Report
      2012 Final Research Report
  • [Presentation] 受動的DNA脱メチル化後のDNA損傷誘導にはUHRF1が関与する2011

    • Author(s)
      杉村和人,杉浦健太,中林裕貴,来馬啓介,緒方正人,奥村克純
    • Organizer
      第5回日本エピジェネティクス研究会年会
    • Place of Presentation
      熊本市
    • Related Report
      2012 Final Research Report 2011 Annual Research Report
  • [Presentation] DNAメチル化阻害による転写抑制型クロマチンから転写活性型クロマチンへの転化2011

    • Author(s)
      杉村和人,緒方 正人,奥村克純
    • Organizer
      日本農芸化学会2011年度大会シンポジウム「遺伝子動態解析技術の進歩と発現制御」企画及び講演
    • Place of Presentation
      京都市 (震災のため開催中止,要旨集発行)
    • Related Report
      2012 Final Research Report
  • [Presentation] DNAメチル化レベルの減少が複製フォーク進行に与える影響2011

    • Author(s)
      来馬 啓介
    • Organizer
      日本農芸化学会中部支部・関西支部合同大会
    • Place of Presentation
      京都市
    • Related Report
      2011 Annual Research Report
  • [Presentation] 受動的DNA脱メチル化後のDNA損傷誘導機構の解明2011

    • Author(s)
      杉浦 健太
    • Organizer
      第33回日本分子生物学会年会
    • Place of Presentation
      横浜市
    • Related Report
      2011 Annual Research Report
  • [Presentation] DNAメチル化レベルの減少が複製フォーク進行に与える影響2011

    • Author(s)
      来馬 啓介
    • Organizer
      第33回日本分子生物学会年会
    • Place of Presentation
      横浜市
    • Related Report
      2011 Annual Research Report
  • [Presentation] UHRF1 is involved in DNA damage induction after passive DNA demethylation2011

    • Author(s)
      Kazuto Sugimura
    • Organizer
      第63回日本細胞生物学会大会
    • Place of Presentation
      札幌市
    • Related Report
      2011 Annual Research Report
    • Invited
  • [Presentation] DNAメチル化阻害による転写抑制型クロマチンから転写活性型クロマチンへの転化2011

    • Author(s)
      杉村和人
    • Organizer
      日本農芸化学会
    • Place of Presentation
      京都市(招待講演)
    • Related Report
      2010 Annual Research Report
  • [Presentation] DNMT1ノックダウンによるDNA損傷誘導にはUHRF1が関与する2010

    • Author(s)
      杉村 和人,杉浦健太,中林裕貴,栗谷健志,緒方正人,奥村克純
    • Organizer
      第33回日本分子生物学会年会・第83回日本生化学会大会合同大会
    • Place of Presentation
      第33回日本分子生物学会年会・第83回日本生化学会大会合同大会
    • Related Report
      2012 Final Research Report
  • [Presentation] UHRF1 involves in DNA damage induction after DNMT1 knockdown2010

    • Author(s)
      Kazuto Sugimura
    • Organizer
      第33回日本分子生物学会年会・第83回日本生化学会大会合同大会
    • Place of Presentation
      神戸市
    • Related Report
      2010 Annual Research Report
  • [Presentation] DNA複製ストレスに応答したセントロメア周辺ヘテロクロマチンの転写活性化2010

    • Author(s)
      金岡秀明
    • Organizer
      第33回日本分子生物学会年会・第83回日本生化学会大会合同大会
    • Place of Presentation
      神戸市
    • Related Report
      2010 Annual Research Report
  • [Presentation] DNAメチル化阻害剤5-aza-2'-deoxycytidineにより誘導されるDNA複製依存的DNA二本鎖切断はDNMT1とUHRF1が関与する2010

    • Author(s)
      中林裕貴
    • Organizer
      第33回日本分子生物学会年会・第83回日本生化学会大会合同大会
    • Place of Presentation
      神戸市
    • Related Report
      2010 Annual Research Report
  • [Presentation] DNAメチル化レベル低下によりDNA損傷が誘導されるゲノム領域の同定

    • Author(s)
      吉村 健
    • Organizer
      日本農芸化学会中部支部第165回例会
    • Place of Presentation
      名古屋市
    • Related Report
      2012 Annual Research Report
  • [Presentation] (346) DNA受動的脱メチル化過程におけるDNA損傷誘導機構の解明 ―ヘミメチル化DNAを認識するUHRF1変異体の機能解析―

    • Author(s)
      川井良斗
    • Organizer
      日本農芸化学会中部支部第165回例会
    • Place of Presentation
      名古屋市
    • Related Report
      2012 Annual Research Report

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Published: 2010-08-23   Modified: 2019-07-29  

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