• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Adaptation and evolution along latitudinal cline of circumpolar element plants

Research Project

Project/Area Number 22405013
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section海外学術
Research Field Biodiversity/Systematics
Research InstitutionKyoto University

Principal Investigator

SETOGUCHI Hiroaki  京都大学, 人間・環境学研究科(研究院), 教授 (70206647)

Co-Investigator(Kenkyū-buntansha) IKEDA Hajime  岡山大学, 資源植物科学研究所, 助教 (70580405)
FUJII Noriyuki  熊本大学, 大学院自然科学研究科, 准教授 (40305412)
AZUMA Hiroshi  京都大学, 大学院理学研究科, 助教 (50362439)
Project Period (FY) 2010-04-01 – 2014-03-31
Project Status Completed (Fiscal Year 2013)
Budget Amount *help
¥18,070,000 (Direct Cost: ¥13,900,000、Indirect Cost: ¥4,170,000)
Fiscal Year 2013: ¥3,900,000 (Direct Cost: ¥3,000,000、Indirect Cost: ¥900,000)
Fiscal Year 2012: ¥4,550,000 (Direct Cost: ¥3,500,000、Indirect Cost: ¥1,050,000)
Fiscal Year 2011: ¥4,290,000 (Direct Cost: ¥3,300,000、Indirect Cost: ¥990,000)
Fiscal Year 2010: ¥5,330,000 (Direct Cost: ¥4,100,000、Indirect Cost: ¥1,230,000)
Keywords系統地理学 / 周極高山植物 / 適応 / 環境 / フィトクロム / 緯度 / 開花 / 起源 / 周極要素植物 / 高山植物 / 光環境 / 開花時期 / 種内多型 / 系統 / アブラナ科 / マメ科 / 花成 / 環境適応 / 周極植物 / 地域分化 / 異所的種分化 / 系統地理 / 進化
Research Abstract

Photoreceptors such as phytochromes and cryptochromes regulate germination and flowering via light signals, and play essential roles for plants by sensing surrounding environments and being able to present appropriate responses are essential for both survival and reproductive success of plants. We investigated PHYE alleles in Japanese endemic Cardamine nipponica and its sister taxon, C. bellidifolia, in higher latitude. PHYE alleles of C. nipponica from Northern Japan formed a robust clade with those of C. bellidifolia, while C. nipponica in central Japanese harbored isolated PHYE gene alleles. This study demonstrates that persistence of ancestral alleles can be attributed to the intraspecific variation in PHYE, representing a notable evolutionary process of phytochromes according to the environment factors in each latitude. These studies were conducted under collaboration between the Russian Academy of Sciences and/or Oslo University.

Report

(5 results)
  • 2013 Annual Research Report   Final Research Report ( PDF )
  • 2012 Annual Research Report
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (44 results)

All 2014 2013 2012 2011 Other

All Journal Article (25 results) (of which Peer Reviewed: 25 results,  Open Access: 2 results) Presentation (15 results) Book (1 results) Remarks (3 results)

  • [Journal Article] Molecular evidence of ancient relicts of arctic-alpine plants in East Asia2014

    • Author(s)
      Ikeda, H., Barkalov, V., Yakubov, V.V., Setoguchi, H.
    • Journal Title

      New Phytologists

      Volume: (in press)

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Development of microsatellite markers for Vitex rotundifolia (Verbenaceae), an endangered coastal plant isolated in Lake Biwa, Japan2014

    • Author(s)
      T., Shoda, T., Kaneko, Y., Setogu
    • Journal Title

      ApPlications in Plant Sciences.

      Volume: 2(4) Issue: 4 Pages: 1-3

    • DOI

      10.3732/apps.1300100

    • Related Report
      2013 Final Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Genetic differentiation and genetic diversity of Castanopsis (Fagaceae), the dominant tree species in Japanese broadleaved evergreen forests, revealed by analysis of EST associated microsatellites2014

    • Author(s)
      Kyoko AOKI, Saneyosni UENO, Takashi KAMIJO, Hiroaki SETOGUCHI, Noriaki MURAKAMI, Makoto KATO, Yoshihiko TSUMURA
    • Journal Title

      PLOS ONE

      Volume: 9 Issue: 1 Pages: 1-13

    • DOI

      10.1371/journal.pone.0087429

    • Related Report
      2013 Final Research Report
    • Peer Reviewed / Open Access
  • [Journal Article] Molecular evidence of ancient relicts of arctic-alpine plants in East Asia.2014

    • Author(s)
      Ikeda, H., Barkalov, V., Yakubov, V.V., Setoguchi, H.
    • Journal Title

      New Phytologists

      Volume: in press

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular phylogeny of Shortia sensu lato (Diapensiaceae) based on multiple nuclear sequences2014

    • Author(s)
      Higashi, H., Ikeda, H., Setoguchi, H.
    • Journal Title

      Plant Systematics and Evolution

      Volume: in press

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Geographical differentiation inferred from flavonoid content between coastal and freshwater populations of the coastal plant Lathyrus japonicus (Fabaceae)2013

    • Author(s)
      Ohtsuki, T., Murai, S., Iwashina, T. Setoguchi, H.
    • Journal Title

      Biochemical Systematics and Ecology

      Volume: 51 Pages: 243-250

    • DOI

      10.1016/j.bse.2013.09.004

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Multiple introgression events and range shifts in Schizocodon (Diapensiaceae) during the Pleistocene2013

    • Author(s)
      Higashi, H., Sakaguchi, S., Ikeda, H., Isagi, Y., Setoguchi, H.
    • Journal Title

      Botanical Journal of the Linnean Society

      Volume: 173 Issue: 1 Pages: 46-63

    • DOI

      10.1111/boj.12074

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Recent colonization by a coastal plant of inland habitats at an ancient freshwater lake, Lake Biwa : multilocus sequencing and a demographic history of Lathyrus japonicus (Fabaceae)2013

    • Author(s)
      Ohtsuki, T., Ikeda, H., Setoguchi, H.
    • Journal Title

      Ecology and Evolution

      Volume: 3 Issue: 8 Pages: 2600-2611

    • DOI

      10.1002/ece3.654

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] A multilocus sequencing approach reveals the cryptic phylogeographic history of Phyllodoce nipponica Makino (Ericaceae)2013

    • Author(s)
      Ikeda, H., Setoguchi, H.
    • Journal Title

      Biological Journal of the Linnean Society

      Volume: 110 Issue: 1 Pages: 214-226

    • DOI

      10.1111/bij.12116

    • Related Report
      2013 Annual Research Report 2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Phylogeographic study of Phyllodoce aleutica (Ericaceae) in the Japanese archipelago2013

    • Author(s)
      Ikeda, H., Setoguchi, H.
    • Journal Title

      Bulletin of the National Science Museum of Nature and Science, Series B

      Volume: 39 Pages: 87-94

    • NAID

      40019655336

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] New microsatellite markers for Tricyrtis macrantha (Convallariaceae) and cross-amplification in closely related species2013

    • Author(s)
      Ohki, M., Setoguchi, H.
    • Journal Title

      Applications in Plant Sciences

      Volume: 1 Issue: 5 Pages: 1200247-1200247

    • DOI

      10.3732/apps.1200247

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Phylogeographic study of Phyllodoce aleutica (Ericaceae) in the Japanese archipelago.2013

    • Author(s)
      Ikeda, H., Setoguchi, H.
    • Journal Title

      Bulletin of the National Science Museum of Nature and Science, Series B

      Volume: 39 Pages: 87-94

    • NAID

      40019655336

    • Related Report
      2013 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Demographic histories of adaptively diverged riparian and non-riparian species of Ainsliaea (Asteraceae) inferred from coalescent analyses using nuclear loci2012

    • Author(s)
      Mitsui Y., Setoguchi H.
    • Journal Title

      BMC Evolutionary Biology

      Volume: 12 Issue: 1 Pages: 1-14

    • DOI

      10.1186/1471-2148-12-254

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Genetic diversity of symbiotic cyanobacteriain Cycas revoluta (Cycadaceae)2012

    • Author(s)
      Yamada, S., Okubo, S., Miyashita, H., Setoguchi, H.
    • Journal Title

      FEMS Microbiology and Ecology

      Volume: 81 Issue: 3 Pages: 696-706

    • DOI

      10.1111/j.1574-6941.2012.01403.x

    • Related Report
      2013 Final Research Report 2012 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Isolation and characterization of microsatellite loci in Asarumleucosepalum (Aristolochiaceae), an endangered plant endemic to Tokunoshima Island in the Ryukyu Archipelago2012

    • Author(s)
      Matsuda, J., Setoguchi, H.
    • Journal Title

      Conservation Genetics Resources

      Volume: 4 Issue: 3 Pages: 579-581

    • DOI

      10.1007/s12686-011-9596-z

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Evolution of an alpine endemic plant at the arctic-alpine range periphery following Pleistocene climatic oscillations2012

    • Author(s)
      Ikeda, H., Carlsen, T., Fujii, N., Brochmann, C, Setoguchi, H.
    • Journal Title

      New Phytologist

      Volume: 194 Issue: 2 Pages: 583-594

    • DOI

      10.1111/j.1469-8137.2012.04061.x

    • Related Report
      2013 Final Research Report 2012 Annual Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Polymorphismof DNA sequences of crypto chrome genes is not associated with the photoperiodic flowering of wild soybean along a latitudinal cline2012

    • Author(s)
      Ishibashi, N., Setoguchi, H.
    • Journal Title

      Journal of Plant Research

      Volume: (in press) Issue: 4 Pages: 483-488

    • DOI

      10.1007/s10265-011-0470-6

    • Related Report
      2013 Final Research Report 2012 Annual Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Population fragmentation caused randomly fixed genotype in each population of Arabidopsis kamchatica in the Japanese archinelago2012

    • Author(s)
      Higashi, H., Ikeda, H., Setoguchi, H.
    • Journal Title

      Journal of Plant Research

      Volume: 125 Issue: 2 Pages: 223-233

    • DOI

      10.1007/s10265-011-0436-8

    • Related Report
      2012 Annual Research Report 2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular evolution of crypto chrome genes and the evolutionary manner of photoreceptor genes in Card amine nipponica2011

    • Author(s)
      Ikeda H., Fujii N., Setoguchi H
    • Journal Title

      Journal of Plant Research

      Volume: 124 Issue: 1 Pages: 85-92

    • DOI

      10.1007/s10265-010-0361-2

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Speciation by ecologically-based reproductive isolation in plant species under contrasting streamside and forest understory environments.2011

    • Author(s)
      Mitsui, Y., Nomura, N., Isagi, Y., Tobe, H., Setoguchi, H.
    • Journal Title

      Evolution

      Volume: 65 Pages: 335-349

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Homogeneous genetic structure and variation of tree architecture of Larix kaempferi along altitudinal gradients on Mt.Fuji.2011

    • Author(s)
      Nishimura, M, Setoguchi, H.
    • Journal Title

      Journal of Plant Research

      Volume: 124 Pages: 253-263

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Long-term isolation of coastal plant Calystegia soldanella in an ancient lake Biwa, Japan.2011

    • Author(s)
      Noda, A., Mitsui, Y., Ikeda, H., Setoguchi, H.
    • Journal Title

      Biological Journal of the Linnean Society

      Volume: 102 Pages: 51-66

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Molecular phylogeny of Shortia sensu lato (Diapensiaceae) based on multiple nuclear sequences

    • Author(s)
      Higashi, H., Ikeda, H., Setoguchi, H.
    • Journal Title

      Plant Systematics and Evolution

      Volume: (in press)

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Polymorphisms of E1 and GIGANTEAin wild populations of Lotus japonicus

    • Author(s)
      Wakabayashi, T., Oh, H., Kawaguchi, M., Harada, K., Sato, S., Ikeda, H. Setoguchi, H.
    • Journal Title

      Journal of Plant Research

      Volume: (in press)

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Journal Article] Reclassification of Schizocodon sildanelloides var. minimus (Diapensiaceae)

    • Author(s)
      Higashi, H., Setoguchi, H.
    • Journal Title

      Acta Phytotaxonomica et Geobotanica

      Volume: (in press)

    • Related Report
      2013 Final Research Report
    • Peer Reviewed
  • [Presentation] Pleistocene speciation and biogeographic history of arctic-alpine plant2013

    • Author(s)
      Ikeda, H., Yakubov, V., Barkalov, V., Setoguchi, H.
    • Organizer
      ESBE 2013 XIV : Congress of the European Society for Evolutionary Biology
    • Place of Presentation
      The University of Lisbon, Lisbon, Portugal
    • Related Report
      2013 Final Research Report
  • [Presentation] Multiple introgression events and range shifts in Schizocodon (Diapensiaceae) during the Pleistocene2013

    • Author(s)
      Higashi, H., Sakaguchi, S., Ikeda, H., Isagi, Y., Setoguchi, H.
    • Organizer
      The 11^<th> IntEcol (The International Association for Ecology) 2013
    • Place of Presentation
      London, UK
    • Related Report
      2013 Final Research Report
  • [Presentation] Unique genetic structure of an varctic-alpine plant, Vaccinium vitis-idaea (Ericaceae), in the Japanese archipelago2013

    • Author(s)
      Ikeda, H., Higashi, H., Brochmann, C., Setoguchi, H.
    • Organizer
      日本生態学会
    • Place of Presentation
      静岡県コンベンションアーツセンター
    • Related Report
      2013 Final Research Report
  • [Presentation] ツガザクラ属Phyllodoce の分子系統解析と日本固有高山植物ツガザクラPhyllodoce nipponica の起源2013

    • Author(s)
      池田啓,Valentin Yakubov,Viachenslav Barkalov,Marr Kendrik,瀬戸口浩彰
    • Organizer
      日本植物学会第77大会
    • Place of Presentation
      北海道大学,札幌
    • Related Report
      2013 Final Research Report
  • [Presentation] Pleistocene speciation and biogeographic history of arctic-alpine plant.2013

    • Author(s)
      Ikeda, H., Yakubov, V., Barkalov, V., Setoguchi, H.
    • Organizer
      ESBE 2013 XIV: Congress of the European Society for Evolutionary Biology
    • Place of Presentation
      The University of Lisbon, Lisbon, Portugal.
    • Related Report
      2013 Annual Research Report
  • [Presentation] Multiple introgression events and range shifts in Schizocodon (Diapensiaceae) during the Pleistocene.2013

    • Author(s)
      Higashi, H., Sakaguchi, S., Ikeda, H., Isagi, Y., Setoguchi, H.
    • Organizer
      The 11th IntEcol (The International Association for Ecology) 2013
    • Place of Presentation
      London, UK.
    • Related Report
      2013 Annual Research Report
  • [Presentation] ツガザクラ属Phyllodoceの分子系統解析と日本固有高山植物ツガザクラPhyllodoce nipponicaの起源.2013

    • Author(s)
      池田啓,Valentin Yakubov,Viachenslav Barkalov,Marr Kendrik,瀬戸口浩彰
    • Organizer
      日本植物学会第77大会
    • Place of Presentation
      北海道大学,札幌
    • Related Report
      2013 Annual Research Report
  • [Presentation] Molecular evolution of photoreceptor genes between sister species2012

    • Author(s)
      Ikeda, H., Gustafsson, L., Brochmann, C., Setoguchi, H.
    • Organizer
      Evolution Ottawa (1^<st> Joint Congress on Evolutionary Biology : American Society of Naturalist, European Society for Evolutionary Biology, Society of the Study of Evolution, Society of Systemtic Biologist, Canadian Society of Systematic Biologists)
    • Place of Presentation
      Ottawa, Canada
    • Related Report
      2013 Final Research Report
  • [Presentation] Molecular evolution of photoreceptor genes between sister species.2012

    • Author(s)
      Ikeda, H., Gustafsson, L., Brochmann, C., Setoguchi, H.
    • Organizer
      Evolution Ottawa (1st Joint Congress on Evolutionary Biology)
    • Place of Presentation
      Ottawa, Canada
    • Related Report
      2012 Annual Research Report
  • [Presentation] Recent colonization of a coastal plant into inland habitats at an ancient freshwater lake, Lake Biwa.2012

    • Author(s)
      Ohtsuki, T., Ikeda, H., Setoguchi, H.
    • Organizer
      Evolution Ottawa (1st Joint Congress on Evolutionary Biology)
    • Place of Presentation
      Ottawa, Canada
    • Related Report
      2012 Annual Research Report
  • [Presentation] 周極―高山植物における種分化と光受容体の分子進化2012

    • Author(s)
      池田啓、岡義人、Lovisa, G., Brochmann, C., 長谷あきら、瀬戸口浩彰
    • Organizer
      日本植物学会第76回大会
    • Place of Presentation
      兵庫県立大学、姫路
    • Related Report
      2012 Annual Research Report
  • [Presentation] ミヤコグサの開花時期変異とこれを制御する遺伝子群の多型:種内の進化をもたらす機構2012

    • Author(s)
      呉ハナ・川口正代司・原田久也・瀬戸口浩彰
    • Organizer
      日本植物分類学会第11回大会
    • Place of Presentation
      大阪学院大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] ツガザクラにおける核遺伝子と葉緑体の矛盾した地理構造2012

    • Author(s)
      池田啓
    • Organizer
      日本植物分類学会第11回大会
    • Place of Presentation
      大阪学院大学
    • Related Report
      2011 Annual Research Report
  • [Presentation] 進化を続ける植物たち:環境適応と植物の種内分化2011

    • Author(s)
      瀬戸口浩彰
    • Organizer
      首都大学東京バイオコンフェレンス
    • Place of Presentation
      首都大学東京(招待講演)
    • Year and Date
      2011-11-11
    • Related Report
      2011 Annual Research Report
  • [Presentation] Ecological speciation in the presence of gene flow in the flood-resistant plant Ainsliaea(Asteraceae).2011

    • Author(s)
      Yuki, M., Setoguchi, H.
    • Organizer
      日中韓・東アジア植物分類学シンポジウム
    • Place of Presentation
      ソウル大学(韓国・ソウル市)(招待講演)
    • Year and Date
      2011-08-22
    • Related Report
      2010 Annual Research Report
  • [Book] 日本の固有植物-国立科学博物舘叢書11巻2011

    • Author(s)
      瀬戸口浩彰(分担執筆)
    • Total Pages
      503
    • Publisher
      東海大学出版会
    • Related Report
      2010 Annual Research Report
  • [Remarks]

    • URL

      http://setolab.h.kyoto-u.ac.jp

    • Related Report
      2013 Final Research Report
  • [Remarks]

    • URL

      http://web.mac.com/setoguch_labo/iWeb/Site/Welcome.html

    • Related Report
      2011 Annual Research Report
  • [Remarks]

    • URL

      http://web.mac.com/setoguchi_labo/iWeb/Site/Welcome.html

    • Related Report
      2010 Annual Research Report

URL: 

Published: 2010-08-23   Modified: 2019-07-29  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi