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A fundamental research on a new AIDS treatment based on an error rate control of HIV-1 reverse transcriptase

Research Project

Project/Area Number 22500273
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Bioinformatics/Life informatics
Research InstitutionToyohashi University of Technology

Principal Investigator

HARADA Koji  豊橋技術科学大学, 大学院・工学研究科, 助教 (40390504)

Project Period (FY) 2010 – 2012
Project Status Completed (Fiscal Year 2012)
Budget Amount *help
¥3,250,000 (Direct Cost: ¥2,500,000、Indirect Cost: ¥750,000)
Fiscal Year 2012: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2011: ¥650,000 (Direct Cost: ¥500,000、Indirect Cost: ¥150,000)
Fiscal Year 2010: ¥1,950,000 (Direct Cost: ¥1,500,000、Indirect Cost: ¥450,000)
KeywordsHIV / HIV 逆転写酵素 / 変異原 / ポピュレーションダイナミクス / 擬種 / エイズ / HIV-1 / シミュレーション / 数理モデル / 代替治療 / HIV-1逆転写酵素 / 分子シミュレーション / 非線形動力学
Research Abstract

The present project aims to establish theoretical bases on an alternative AIDS treatment for ART, which simultaneously administers multiple anti-HIV drugs to an AIDS patient. It is well known that HIV-1 is frequently-mutated. The alternative AIDS treatment is by inducing excess mutations to HIV-1 RNA(+) genome, to drive HIV-1 quasi-species population to self-destruction. Namely it uses the HIV-1error-prone character as an underhanded way. This project proposes a novel HIV-1 mathematical model considered viral kinetic processes such as mutation, replication, infection and mutagenic activities to control HIV-1 mutation rate. Numerical simulations of the model show that enhancement of a HIV-1 mutation rate causes an “error catastrophe”to HIV-1 quasi-species population. Furthermore, analyses of local asymptotic stability of the self-destruction state reveal that the alternative AIDS treatment haseffectiveness under certain specific viral conditions.

Report

(4 results)
  • 2012 Annual Research Report   Final Research Report ( PDF )
  • 2011 Annual Research Report
  • 2010 Annual Research Report
  • Research Products

    (34 results)

All 2013 2012 2011 2010

All Journal Article (18 results) (of which Peer Reviewed: 12 results) Presentation (16 results)

  • [Journal Article] 突然変異率操作によるHIV-1 擬種集団の自壊誘導2013

    • Author(s)
      原田耕治
    • Journal Title

      日本数理生物学会ニュースレター

      Volume: No.70 Pages: 14-17

    • Related Report
      2012 Final Research Report
  • [Journal Article] 突然変異原作用下におけるHIV-1 擬種集団の自壊ダイナミクスの解析2013

    • Author(s)
      原田耕治
    • Journal Title

      京都大学数理解析研究所講究録

    • Related Report
      2012 Final Research Report
  • [Journal Article] Complex Spatial-Temporal Patterns Developed from an Interaction of Functions and Data2013

    • Author(s)
      Kouji Harada、 Yoshiteru Ishida
    • Journal Title

      International Journal of innovative ComputingInformation and Control

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] 突然変異率操作によるHIV-1擬種集団の自壊誘導2013

    • Author(s)
      原田耕治
    • Journal Title

      日本数理生物学会ニュースレター

      Volume: 70

    • Related Report
      2012 Annual Research Report
  • [Journal Article] 突然変異原作用下におけるHIV-1擬種集団の自壊ダイナミクスの解析2013

    • Author(s)
      原田耕治
    • Journal Title

      京都大学数理解析研究所講究録

      Volume: 未確定

    • Related Report
      2012 Annual Research Report
  • [Journal Article] Emergence of observable rules in a spatial game system2012

    • Author(s)
      Kouji Harada、 Yoshiteru Ishida
    • Journal Title

      Artificial Life and Robotics

      Volume: Vol.14 、No.4 Pages: 559-562

    • Related Report
      2012 Final Research Report
  • [Journal Article] Toward development of a strategy to drive HIV -1 into self-extinction through the error catastrophe2012

    • Author(s)
      Kouji Harada、 Yoshiteru Ishida
    • Journal Title

      Proc. of Artificial Life and Robotics(AROB) 17th

      Pages: 317-320

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] A pattern formation mechanism of a cellular automaton evolving on a mutual determination rule of variables and a dynamics2012

    • Author(s)
      Kouji Harada、 Yoshiteru Ishida
    • Journal Title

      Proc. of AROB 17th

      Pages: 321-324

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] A Pattern Formation Mechanism of a Cellular Automaton Evolving on a Mutual Determination Rule of Variables and a Dynamics2012

    • Author(s)
      Kouji Harada, Yoshiteru Ishida
    • Journal Title

      Proc.of AROB 17th

      Pages: 321-324

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Toward Development of a Strategy to Drive HIV-1 into Self-Extinction through the Error Catastrophe2012

    • Author(s)
      Kouji Harada, Yoshiteru Ishida
    • Journal Title

      Proc.of AROB 17th

      Pages: 317-320

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Toward elucidation of longevity of immunological memory2011

    • Author(s)
      Kouji Harada、 Yoshiteru Ishida
    • Journal Title

      Lecture Notes in Computer Science 、Springer-Verlag

      Volume: Vol.6884 Pages: 308-317

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Emergence of observable rules in a spatial game system2011

    • Author(s)
      Kouji Harada、 Yoshiteru Ishida
    • Journal Title

      Proc. of AROB 16th

      Pages: 459-462

    • Related Report
      2012 Final Research Report
    • Peer Reviewed
  • [Journal Article] Emergence of Observable Rules in a Spatial Game System2011

    • Author(s)
      Kouji Harada, Yoshiteru Ishida
    • Journal Title

      Artificial Life and Robotics

      Volume: 16 Pages: 559-562

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Emergence of Observable Rules in a Spatial Game System2011

    • Author(s)
      Kouji Harada, Yoshiteru Ishida
    • Journal Title

      Proc.of AROB 16th

      Pages: 459-462

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Tovvard Elucidation of Longevity of Immunological Memory2011

    • Author(s)
      Kouji Harada, Yoshiteru Ishida
    • Journal Title

      Lecture Note in Computer Science

      Volume: 6884 Pages: 308-317

    • Related Report
      2011 Annual Research Report
    • Peer Reviewed
  • [Journal Article] Emergence of observable rules in a spatial game system2011

    • Author(s)
      Kouji Harada, Yoshiteru Ishida
    • Journal Title

      Artificial Life and Robotics

      Volume: VOL.16(未定)

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Journal Article] A note on dynamical behaviors of a spatial game operated on intercrossed rules2010

    • Author(s)
      Kouji Harada、Yoshiteru Ishida
    • Journal Title

      Lecture Notes in Computer Science 、Springer-Verlag

      Volume: Vol. 6278 Pages: 637-644

    • Related Report
      2012 Final Research Report
  • [Journal Article] A Note on Dynamical Behaviors of a Spatial Game Operated on Intercrossed Rules2010

    • Author(s)
      Kouji Harada, Yoshiteru Ishida
    • Journal Title

      Lecture Notes in Computer Science

      Volume: VOL.6278 Pages: 637-644

    • Related Report
      2010 Annual Research Report
    • Peer Reviewed
  • [Presentation] 誘発突然変異による HIV-1擬種集団の自壊現象解析2013

    • Author(s)
      原田耕治
    • Organizer
      日本物理学会年会、広島大
    • Place of Presentation
      東広島市
    • Related Report
      2012 Final Research Report
  • [Presentation] 誘発突然変異によるHIV-1擬種集団の自壊現象解析2013

    • Author(s)
      原田耕治
    • Organizer
      日本物理学会第68回年次大会
    • Place of Presentation
      広島大
    • Related Report
      2012 Annual Research Report
  • [Presentation] Toward Development of a Strategy to Drive HIV-1 into Self-Extinction through the Error Catastrophe2012

    • Author(s)
      Kouji Harada
    • Organizer
      AROB 17th
    • Place of Presentation
      Beppu, Japan
    • Year and Date
      2012-01-20
    • Related Report
      2011 Annual Research Report
  • [Presentation] A Pattern Formation Mechanism of a Cellular Automaton Evolving on a Mutual Determination Rule of Variables and a Dynamics2012

    • Author(s)
      Kouji Harada
    • Organizer
      AROB 17th
    • Place of Presentation
      Beppu, Japan
    • Year and Date
      2012-01-20
    • Related Report
      2011 Annual Research Report
  • [Presentation] 突然変異原作用下におけるHIV-1 擬種集団の自壊ダイナミクスの解析2012

    • Author(s)
      原田耕治
    • Organizer
      第9回生物数学の理論とその応用研究集会、京都大
    • Place of Presentation
      京都市
    • Related Report
      2012 Final Research Report
  • [Presentation] A study on a Self-Destruction Process of a HIV-1 Quasispecies Population through the Error Catastrophe (エラーカタストロフィーによる HIV-1 擬種集団の自壊過程に関する研究)2012

    • Author(s)
      Kouji Harada
    • Organizer
      日本生物物理学会年会、名古屋大
    • Place of Presentation
      名古屋市
    • Related Report
      2012 Final Research Report
  • [Presentation] Toward Development of a Strategy to Drive HIV -1 into Self-Extinction through the Error Catastrophe2012

    • Author(s)
      Kouji Harada and Yoshiteru Ishida
    • Organizer
      AROB 17th
    • Place of Presentation
      Beppu ; Japan
    • Related Report
      2012 Final Research Report
  • [Presentation] A Pattern Formation Mechanism of a Cellular Automaton Evolving on a Mutual Determination Rule of Variables and a Dynamics2012

    • Author(s)
      Kouji Harada and Yoshiteru Ishida
    • Organizer
      AROB 17th
    • Place of Presentation
      Beppu ; Japan
    • Related Report
      2012 Final Research Report
  • [Presentation] A study on a Self-Destruction Process of a HIV-1 Quasispecies Population through the Error Catastrophe2012

    • Author(s)
      Kouji Harada
    • Organizer
      第50回日本生物物理学会年会
    • Place of Presentation
      名古屋大
    • Related Report
      2012 Annual Research Report
  • [Presentation] 突然変異原作用下におけるHIV-1擬種集団の自壊ダイナミクスの解析2012

    • Author(s)
      原田耕治
    • Organizer
      第9回生物数学の理論とその応用研究集会
    • Place of Presentation
      京都大
    • Related Report
      2012 Annual Research Report
  • [Presentation] Toward Elucidation of Longevity of Immunological Memory2011

    • Author(s)
      Kouji Harada
    • Organizer
      KES'11
    • Place of Presentation
      Kaiserslautern, Germany
    • Year and Date
      2011-09-13
    • Related Report
      2011 Annual Research Report
  • [Presentation] Emergence of Observable Rules in a Spatial Game System2011

    • Author(s)
      Kouji Harada, Yoshiteru Ishida
    • Organizer
      AROB' 16^<th>
    • Place of Presentation
      B-CONプラザ(大分県)
    • Year and Date
      2011-01-29
    • Related Report
      2010 Annual Research Report
  • [Presentation] Toward Elucidation of Longevity of Immunological Memory2011

    • Author(s)
      Kouji Harada and Yoshiteru Ishida
    • Organizer
      KES'11
    • Place of Presentation
      Kaiserslautern ; Germany
    • Related Report
      2012 Final Research Report
  • [Presentation] Emergence of Observable Rules in a Spatial Game System2011

    • Author(s)
      Kouji Harada and Yoshiteru Ishida
    • Organizer
      AROB 16th
    • Place of Presentation
      Beppu ; Japan
    • Related Report
      2012 Final Research Report
  • [Presentation] A Note on Dynamical Behaviors of a Spatial Game Operated on Intercrossed Rules2010

    • Author(s)
      Kouji Harada, Yoshiteru Ishida
    • Organizer
      KES' 2010
    • Place of Presentation
      Mercure Cardiff Holland House Hotel (Cardiff, Wales, UK)
    • Year and Date
      2010-09-08
    • Related Report
      2010 Annual Research Report
  • [Presentation] A Note on Dynamical Behaviors of a Spatial Game Operated on Intercrossed Rules2010

    • Author(s)
      Kouji Harada and Yoshiteru Ishida
    • Organizer
      KES'10
    • Place of Presentation
      Cardiff ; UK
    • Related Report
      2012 Final Research Report

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Published: 2010-11-30   Modified: 2019-07-29  

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